MELO3C006108 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C006108
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionRecombination initiation defects 3, putative isoform 1
Locationchr6 : 1103443 .. 1105697 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGGCTGAAGATAAACAAGGCCTGTGATCTCAGTTCTATCTCCGTTCTTCCTCCTCAGTCCAGGCATGAACCTGTTCTTAATTATTTTTAGCGTTATATTCTGTTTGAATTGCAAGAGTTCATGGAGAACAATGCGCAAAGAAGTTTAGGTTGCAATGCTGTTCATATTCAGTAGCTTGACATTTTCTTAACATAAATGTTTCATGTTGTTTATTGTGTTACTCGTTTTGGAAAATATGGATTTCCTTTTCATCCTAGCTGCGTTTTTGATGATTCGGAAGGAATTTGTTGTCCCCGAGCTGTTAAGAGATTGATATTTTAAATATTTCTTACTGTATAGACTTCGAAACTGATACTTACACGCATCGTAGTTTGATTCGTTCTATGGTTGAATTGACTTTATTTTTAGCAATACATTATTCAGTTACTTTAAGTTTGGATAAAAAGAACAGATGAGTAAGAACATGAAGTTTTCAGACTATAATCTTATCATGAAATTGCAAGCTGAGTTACTTGATCCAATATTTTGAGTATTACGTCATTATTTTCAATTTTGTTCCACGCAAAAATATTCAAGAAAAATACGAAAGTTTCTTCAGTGATGAAAATGTGAATGGTCTTGAAAATCTGTAGAAGGTTAAATGCGTTAACGACTGGGCAGCAAGCACCACAGTTGCGATCACAACCTTCGCAACAATCCTTTTCTCAGGGATTGTCGTCTCAGCACGGCATGTATTCTCAACTTTCTCAGAACTCTTTTGACGAAGTCGTGACAAATGAACAGGTCAATCTCGGTTCTTGTCTAGACTCTGGATTTAGGACTTTGTTTGTCCATTAAGAAATTAAGGAAATGACACTAAAATGCTCTGGCTCTTTATCATTCCATGCGCATTAGCATTGAAGACAAAACTTGGAAATGGTTATTTTCATTGTTTAGGAATCACTTTTGAATTTTATTTTATTATCTATTTTTTGACGTATAATCTACCAAAAAAAGAAAGAAAAGGAAACTATCTCTTGAGTTCTTAAATCTATTTTTTGTTTTAATCTCCACTTATGAATTAACTTTGATGTACGATTCTTTCTGGCAGAGATTTAGCTCTCAAGACCGAGAAAACTCAATTAAGAAGAATTCTTTTTTTCCTCCTCTAAGTTACTCCAAAGAAGATTGTCAATTGGGACTCTCAAAATCTTCAACCAGTTTAACACAAAAATGGAGACCTAGTCCTCTTACGGATTCTAAGTGTAAGTTCATTCTTTTGGACTCCTATAGCGGACTCTAACTATTTCAATAAGTTCGGTTGAATCCGTTACAGCATGGTATAACAGTTTGTGTAGGGTAAGTTGATCAACTGCCATTTCTTACAACCTTGATATCTTTTCTGTGACTTAGTTTCATAATTTAGCTTTCTTTTTCAGGTCAAGTTGGTGAAGAACTTGACCGCCGCCTTGGAACTATAGAAAACTCATTAAACAAGTTTGGAAAGATCTTGGATTCTCTTCTCAGTGACATCTTACAACTAAACAAAGGAATGAAGCAAGTTTCTCTGGATGGTGAGTTTTGCAATCCCTCAAGCTGAAAAGTAAAATTGGAAGAGAAACTATGTATTAGTTTTACTGCTTGAAAAACACTTTCTGCATTGAAACCCGATGTGTTTGTTACTGAAGTAGGAATACGGTGATGAATATGCTCTATTTGAATTTCAGTTCCTTCAAAAAGTAGATTAAGATTGCTATGCTATTAATGTGAAAAGGGGAAAGTGCCCAATTCAGTACACAATCCCGACCTCAAATTTAAAGTTTCAAGGCCAAAAGTTTATTCAAATAAAATGCTTATTTATTTTTCAAATTGCAGTGGAAAGCATATGGCAAAAGATGCTTGTTAACAGTAGCTTGCTGCAATCCATGGTAAAATTGTATTAGATCAATGAAATATTTTTTTGATCATTAAGTTTCTTTAATTGTAATCGTAATATCTAAATTGTGCATTCAATTAACGAGTGCAAATTTCAATGTCAGAACAAAGACCACGATGACATGAAAGCTATCATCGATGGAGGCTTCAAATTGATATCCGATCAACTTAAGAAGGATGCATACCAAGAAAGGCTGCATGAGATTTCCGATTTTCTTTCTTCATTGGAAAAGCAAGTACAAGCGTCTCAACTTAAATTAAAAAATGACTTCATCAGCACATTCACCAAAGAAATGAAGGTAAGTGCATGTTGTGTCAAATATTTCTATAGCCTATAA

mRNA sequence

ATGCGGCTGAAGATAAACAAGGCCTGTGATCTCAGTTCTATCTCCGTTCTTCCTCCTCAGTTAAATGCGTTAACGACTGGGCAGCAAGCACCACAGTTGCGATCACAACCTTCGCAACAATCCTTTTCTCAGGGATTGTCGTCTCAGCACGGCATGTATTCTCAACTTTCTCAGAACTCTTTTGACGAAGTCGTGACAAATGAACAGAGATTTAGCTCTCAAGACCGAGAAAACTCAATTAAGAAGAATTCTTTTTTTCCTCCTCTAAGTTACTCCAAAGAAGATTGTCAATTGGGACTCTCAAAATCTTCAACCAGTTTAACACAAAAATGGAGACCTAGTCCTCTTACGGATTCTAAGTGTCAAGTTGGTGAAGAACTTGACCGCCGCCTTGGAACTATAGAAAACTCATTAAACAAGTTTGGAAAGATCTTGGATTCTCTTCTCAGTGACATCTTACAACTAAACAAAGGAATGAAGCAAGTTTCTCTGGATGTGGAAAGCATATGGCAAAAGATGCTTGTTAACAGTAGCTTGCTGCAATCCATGAACAAAGACCACGATGACATGAAAGCTATCATCGATGGAGGCTTCAAATTGATATCCGATCAACTTAAGAAGGATGCATACCAAGAAAGGCTGCATGAGATTTCCGATTTTCTTTCTTCATTGGAAAAGCAAGTACAAGCGTCTCAACTTAAATTAAAAAATGACTTCATCAGCACATTCACCAAAGAAATGAAGGTAAGTGCATGTTGTGTCAAATATTTCTATAGCCTATAA

Coding sequence (CDS)

ATGCGGCTGAAGATAAACAAGGCCTGTGATCTCAGTTCTATCTCCGTTCTTCCTCCTCAGTTAAATGCGTTAACGACTGGGCAGCAAGCACCACAGTTGCGATCACAACCTTCGCAACAATCCTTTTCTCAGGGATTGTCGTCTCAGCACGGCATGTATTCTCAACTTTCTCAGAACTCTTTTGACGAAGTCGTGACAAATGAACAGAGATTTAGCTCTCAAGACCGAGAAAACTCAATTAAGAAGAATTCTTTTTTTCCTCCTCTAAGTTACTCCAAAGAAGATTGTCAATTGGGACTCTCAAAATCTTCAACCAGTTTAACACAAAAATGGAGACCTAGTCCTCTTACGGATTCTAAGTGTCAAGTTGGTGAAGAACTTGACCGCCGCCTTGGAACTATAGAAAACTCATTAAACAAGTTTGGAAAGATCTTGGATTCTCTTCTCAGTGACATCTTACAACTAAACAAAGGAATGAAGCAAGTTTCTCTGGATGTGGAAAGCATATGGCAAAAGATGCTTGTTAACAGTAGCTTGCTGCAATCCATGAACAAAGACCACGATGACATGAAAGCTATCATCGATGGAGGCTTCAAATTGATATCCGATCAACTTAAGAAGGATGCATACCAAGAAAGGCTGCATGAGATTTCCGATTTTCTTTCTTCATTGGAAAAGCAAGTACAAGCGTCTCAACTTAAATTAAAAAATGACTTCATCAGCACATTCACCAAAGAAATGAAGGTAAGTGCATGTTGTGTCAAATATTTCTATAGCCTATAA

Protein sequence

MRLKINKACDLSSISVLPPQLNALTTGQQAPQLRSQPSQQSFSQGLSSQHGMYSQLSQNSFDEVVTNEQRFSSQDRENSIKKNSFFPPLSYSKEDCQLGLSKSSTSLTQKWRPSPLTDSKCQVGEELDRRLGTIENSLNKFGKILDSLLSDILQLNKGMKQVSLDVESIWQKMLVNSSLLQSMNKDHDDMKAIIDGGFKLISDQLKKDAYQERLHEISDFLSSLEKQVQASQLKLKNDFISTFTKEMKVSACCVKYFYSL*
Homology
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BLAST of MELO3C006108 vs. Swiss-Prot
Match: PAIR1_ORYSJ (Protein PAIR1 OS=Oryza sativa subsp. japonica GN=PAIR1 PE=1 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 5.0e-33
Identity = 103/259 (39.77%), Postives = 148/259 (57.14%), Query Frame = 1 

Query: 1   MRLKINKACDLSSISVLPPQLNALTTGQQAP---------QLRSQP---SQQSFSQGLSS 60
           M+LK+NKACD++SISVLPP+    ++G  A          Q RSQP   SQQSFSQG S+
Sbjct: 1   MKLKMNKACDIASISVLPPRRTGGSSGASASGSVAVAVASQPRSQPLSQSQQSFSQGASA 60

Query: 61  Q--HGMYSQLSQNSFDEVV-------TNEQRFSSQDRENSIKKNSFFPPLSYS--KEDCQ 120
              H   SQ SQ S D+ +       T +QRF   D  +S K+ S  P  S S  +E+ Q
Sbjct: 61  SLLHSQ-SQFSQVSLDDNLLTLLPSPTRDQRFGLHD--DSSKRMSSLPASSASCAREESQ 120

Query: 121 LGLSKSSTSLTQKWRPSPLTDSKCQV-GEELDRRLGTIENSLNKFGKILDSLLSDILQLN 180
           L L+K  ++   +W PS       QV  E+++R+   + +S++K G ++DS+ SD++QLN
Sbjct: 121 LQLAKLPSNPVHRWNPSIADTRSGQVTNEDVERKFQHLASSVHKMGMVVDSVQSDVMQLN 180

Query: 181 KGMKQVSLDVESIWQKMLVNSSLLQSMNKDHDDMKAIIDGGFKLISDQLK-KDAYQERLH 235
           + MK+ SLD  SI QK+ V  S LQ + K  DD+KA+     K   DQ    ++   +L+
Sbjct: 181 RAMKEASLDSGSIRQKIAVLESSLQQILKGQDDLKALFGSSTKHNPDQTSVLNSLGSKLN 240

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BLAST of MELO3C006108 vs. TrEMBL
Match: A0A0A0L487_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G122370 PE=4 SV=1)

HSP 1 Score: 436.8 bits (1122), Expect = 1.9e-119
Identity = 222/236 (94.07%), Postives = 228/236 (96.61%), Query Frame = 1 

Query: 20  QLNALTTGQQAPQLRSQPSQQSFSQGLSSQHGMYSQLSQNSFDEVVTNEQRFSSQDRENS 79
           +LNALTTGQQA QLRSQPSQQSFSQGLSSQHGMYSQLSQNSFDEVVTNEQRFSSQDRENS
Sbjct: 18  RLNALTTGQQASQLRSQPSQQSFSQGLSSQHGMYSQLSQNSFDEVVTNEQRFSSQDRENS 77

Query: 80  IKKNSFFPPLSYSKEDCQLGLSKSSTSLTQKWRPSPLTDSKCQVGEELDRRLGTIENSLN 139
           IKKNSFFPP+SYSKED QLG+SKSSTSLTQKWRPSPL DSKCQVGEELDRRLGTIENS+N
Sbjct: 78  IKKNSFFPPVSYSKEDSQLGISKSSTSLTQKWRPSPLPDSKCQVGEELDRRLGTIENSVN 137

Query: 140 KFGKILDSLLSDILQLNKGMKQVSLDVESIWQKMLVNSSLLQSMNKDHDDMKAIIDGGFK 199
           KFGKILDSLLSDILQLNKGMKQVSLDVESIWQKML+NSS LQSMNKDHDDMKAIIDGGFK
Sbjct: 138 KFGKILDSLLSDILQLNKGMKQVSLDVESIWQKMLINSSSLQSMNKDHDDMKAIIDGGFK 197

Query: 200 LISDQLKKDAYQERLHEISDFLSSLEKQVQASQLKLKNDFISTFTKEMKVSACCVK 256
           LISDQLKKDAYQERLHEISDFLSSLEKQVQASQLKLKNDFISTFTKEMK   C +K
Sbjct: 198 LISDQLKKDAYQERLHEISDFLSSLEKQVQASQLKLKNDFISTFTKEMKAMICTLK 253

[Close]
BLAST of MELO3C006108 vs. TrEMBL
Match: A0A067JXJ9_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14393 PE=4 SV=1)

HSP 1 Score: 279.6 bits (714), Expect = 3.8e-72
Identity = 141/258 (54.65%), Postives = 196/258 (75.97%), Query Frame = 1 

Query: 1   MRLKINKACDLSSISVLPPQ---LNALTTGQQAPQLRSQPSQQSFSQGLSSQHGMYSQLS 60
           M+LKINKACDL+SISVLPPQ   L+A+ TG Q  QLRSQ SQQSFSQG+SSQHG++SQLS
Sbjct: 1   MKLKINKACDLNSISVLPPQSRRLSAIPTGLQTSQLRSQQSQQSFSQGISSQHGLFSQLS 60

Query: 61  QNSFDEVVTNEQRFSSQDRENSIKKNSFFPPLSYSKEDCQLGLSKSSTSLTQKWRPSPLT 120
           Q SF E ++NEQRFS  +RE+S+KK S  PP+SY++E+ Q+ +S+SST++ ++W  + + 
Sbjct: 61  QTSFGEPLSNEQRFSYLERESSVKKTSCLPPVSYAREESQMPISRSSTNVMRRWNTASVP 120

Query: 121 DSKCQVGEELDRRLGTIENSLNKFGKILDSLLSDILQLNKGMKQVSLDVESIWQKMLVNS 180
           D KCQ+ EEL+ R+G IE SLNKFG ILDS+ SD++Q+NKG K++SL++E I QK++   
Sbjct: 121 DHKCQINEELEHRIGMIETSLNKFGMILDSVQSDVMQVNKGTKEISLEMEGIRQKLVALD 180

Query: 181 SLLQSMNKDHDDMKAIIDGGFKLISDQLKKDAYQERLHEISDFLSSLEKQVQASQLKLKN 240
           + LQ M    +D+K+ +DG  K IS++L+KD  Q++L +I   LS L  Q++AS LKL+ 
Sbjct: 181 ASLQLMITGQEDIKSSLDGNLKSISERLRKDICQDKLKQIFLVLSVLPNQMEASLLKLQQ 240

Query: 241 DFISTFTKEMKVSACCVK 256
           +   TFTKEM+ SAC +K
Sbjct: 241 EICMTFTKEMQASACKLK 258

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BLAST of MELO3C006108 vs. TrEMBL
Match: B9RDS5_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1615290 PE=4 SV=1)

HSP 1 Score: 275.0 bits (702), Expect = 9.3e-71
Identity = 139/250 (55.60%), Postives = 188/250 (75.20%), Query Frame = 1 

Query: 1   MRLKINKACDLSSISVLPPQ--LNALTTGQQAPQLRSQPSQQSFSQGLSSQHGMYSQLSQ 60
           M+LKINKACDLSSIS LPPQ  L+ L TG Q  QLRSQ SQQSFSQG SSQHGM+SQ+SQ
Sbjct: 1   MKLKINKACDLSSISALPPQSRLSTLPTGPQTSQLRSQQSQQSFSQGYSSQHGMFSQMSQ 60

Query: 61  NSFDEVVTNEQRFSSQDRENSIKKNSFFPPLSYSKEDCQLGLSKSSTSLTQKWRPSPLTD 120
            SFDE +T +QRF+SQ+RENS+KK S FP +SY++E+ Q+ +S+SST++ +KW  + + D
Sbjct: 61  TSFDEALTTDQRFNSQERENSLKKTSCFPSISYAREESQMPISRSSTNIMRKWNSASVPD 120

Query: 121 SKCQVGEELDRRLGTIENSLNKFGKILDSLLSDILQLNKGMKQVSLDVESIWQKMLVNSS 180
            KCQ+ EEL+ R+G +E  LNKFG IL S+ SD++Q+NKG K+ SL++E I QK++V  +
Sbjct: 121 HKCQINEELEHRIGMMETLLNKFGMILGSVQSDVMQVNKGTKEASLEMEGIRQKLVVLDT 180

Query: 181 LLQSMNKDHDDMKAIIDGGFKLISDQLKKDAYQERLHEISDFLSSLEKQVQASQLKLKND 240
            LQ M K  +D K  +DG  K IS++L KD  Q+RL +I   LS+  +Q++AS LKL++D
Sbjct: 181 SLQLMIKGQEDTKFTLDGSLKSISERLSKDISQDRLQQIFLVLSAFPQQMEASLLKLQSD 240

Query: 241 FISTFTKEMK 249
              TFTKE++
Sbjct: 241 LSMTFTKELQ 250

[Close]
BLAST of MELO3C006108 vs. TrEMBL
Match: A0A061DV47_THECC (Recombination initiation defects 3, putative isoform 1 OS=Theobroma cacao GN=TCM_005325 PE=4 SV=1)

HSP 1 Score: 271.9 bits (694), Expect = 7.9e-70
Identity = 136/258 (52.71%), Postives = 191/258 (74.03%), Query Frame = 1 

Query: 1   MRLKINKACDLSSISVLPPQL---NALTTGQQAPQLRSQPSQQSFSQGLSSQHGMYSQLS 60
           M+LKINKACDLSSISVLPP     + + +G Q+ QLRSQPSQQSFSQG+SSQH ++SQ+S
Sbjct: 1   MKLKINKACDLSSISVLPPHTRRSSLVPSGPQSSQLRSQPSQQSFSQGISSQHALFSQIS 60

Query: 61  QNSFDEVVTNEQRFSSQDRENSIKKNSFFPPLSYSKEDCQLGLSKSSTSLTQKWRPSPLT 120
           Q+S DEVVT +QR+ SQ+RENS+KK S  PP ++++ED Q+ +SK+ST+L +KW  +   
Sbjct: 61  QSSLDEVVTTDQRYGSQERENSVKKFSCLPPTNFTREDSQIPISKTSTNLIRKWNSASNP 120

Query: 121 DSKCQVGEELDRRLGTIENSLNKFGKILDSLLSDILQLNKGMKQVSLDVESIWQKMLVNS 180
           + +CQ  +EL+ RL  +E SLN+FG ILDS+ SD++Q+NKG K+V L++E I QK++   
Sbjct: 121 EHRCQSSQELEHRLSMVETSLNRFGMILDSIQSDVMQVNKGTKEVLLEMERIRQKLIAED 180

Query: 181 SLLQSMNKDHDDMKAIIDGGFKLISDQLKKDAYQERLHEISDFLSSLEKQVQASQLKLKN 240
           + LQ +N   +D+KA +DGG K ISDQL KD Y+++L +I   LS+L +Q +AS LKL+ 
Sbjct: 181 TFLQLLNNGQEDIKASLDGGMKAISDQLNKDIYRDKLQQIFLVLSALPEQTEASLLKLQT 240

Query: 241 DFISTFTKEMKVSACCVK 256
           +  +TFT  +K  A  VK
Sbjct: 241 EICNTFTNVVKGIASNVK 258

[Close]
BLAST of MELO3C006108 vs. TrEMBL
Match: A0A061DU76_THECC (Recombination initiation defects 3, putative isoform 2 OS=Theobroma cacao GN=TCM_005325 PE=4 SV=1)

HSP 1 Score: 271.9 bits (694), Expect = 7.9e-70
Identity = 136/258 (52.71%), Postives = 191/258 (74.03%), Query Frame = 1 

Query: 1   MRLKINKACDLSSISVLPPQL---NALTTGQQAPQLRSQPSQQSFSQGLSSQHGMYSQLS 60
           M+LKINKACDLSSISVLPP     + + +G Q+ QLRSQPSQQSFSQG+SSQH ++SQ+S
Sbjct: 1   MKLKINKACDLSSISVLPPHTRRSSLVPSGPQSSQLRSQPSQQSFSQGISSQHALFSQIS 60

Query: 61  QNSFDEVVTNEQRFSSQDRENSIKKNSFFPPLSYSKEDCQLGLSKSSTSLTQKWRPSPLT 120
           Q+S DEVVT +QR+ SQ+RENS+KK S  PP ++++ED Q+ +SK+ST+L +KW  +   
Sbjct: 61  QSSLDEVVTTDQRYGSQERENSVKKFSCLPPTNFTREDSQIPISKTSTNLIRKWNSASNP 120

Query: 121 DSKCQVGEELDRRLGTIENSLNKFGKILDSLLSDILQLNKGMKQVSLDVESIWQKMLVNS 180
           + +CQ  +EL+ RL  +E SLN+FG ILDS+ SD++Q+NKG K+V L++E I QK++   
Sbjct: 121 EHRCQSSQELEHRLSMVETSLNRFGMILDSIQSDVMQVNKGTKEVLLEMERIRQKLIAED 180

Query: 181 SLLQSMNKDHDDMKAIIDGGFKLISDQLKKDAYQERLHEISDFLSSLEKQVQASQLKLKN 240
           + LQ +N   +D+KA +DGG K ISDQL KD Y+++L +I   LS+L +Q +AS LKL+ 
Sbjct: 181 TFLQLLNNGQEDIKASLDGGMKAISDQLNKDIYRDKLQQIFLVLSALPEQTEASLLKLQT 240

Query: 241 DFISTFTKEMKVSACCVK 256
           +  +TFT  +K  A  VK
Sbjct: 241 EICNTFTNVVKGIASNVK 258

[Close]
BLAST of MELO3C006108 vs. TAIR10
Match: AT1G01690.1 (AT1G01690.1 putative recombination initiation defects 3)

HSP 1 Score: 228.8 bits (582), Expect = 3.9e-60
Identity = 117/255 (45.88%), Postives = 175/255 (68.63%), Query Frame = 1 

Query: 1   MRLKINKACDLSSISVLPPQLNALTTGQQAPQLRSQPSQQSFSQGLSSQH---GMYSQLS 60
           M++ INKACDL SISV PP L      Q + QLRSQ SQQSFSQG SS     G +SQ++
Sbjct: 1   MKMNINKACDLKSISVFPPNLRRSAEPQASQQLRSQQSQQSFSQGPSSSQRGCGGFSQMT 60

Query: 61  QNSFDEVVTNEQRFSSQDRENSIKK-NSFFPPLSYSKEDCQLGLSKSSTSLTQKWRPSPL 120
           Q+S DE++ N+QRFSSQ+R+ S+KK +S  PP+++ +ED QL  S+SS+ L+++W  + +
Sbjct: 61  QSSIDELLINDQRFSSQERDLSLKKVSSCLPPINHKREDSQLVASRSSSGLSRRWSSASI 120

Query: 121 TDSKCQVGEELDRRLGTIENSLNKFGKILDSLLSDILQLNKGMKQVSLDVESIWQKMLVN 180
            +SK Q+ EEL++R G +E SL++FG +LDS+ SDI+Q N+G K+V L+ E I QK+ + 
Sbjct: 121 GESKSQISEELEQRFGMMETSLSRFGMMLDSIQSDIMQANRGTKEVFLETERIQQKLTLQ 180

Query: 181 SSLLQSMNKDHDDMKAIIDGGFKLISDQLKKDAYQERLHEISDFLSSLEKQVQASQLKLK 240
            + LQ + K+  D KA +DGG K I ++  KD  QE+L +I   L+++ +QV+ +  K++
Sbjct: 181 DTSLQQLRKEQADSKASLDGGVKFILEEFSKDPNQEKLQKILQMLTTIPEQVETALQKIQ 240

Query: 241 NDFISTFTKEMKVSA 252
            +   TFT+E++V A
Sbjct: 241 REICHTFTREIQVLA 255

[Close]
BLAST of MELO3C006108 vs. NCBI nr
Match: gi|659075260|ref|XP_008438049.1| (PREDICTED: protein PAIR1 isoform X4 [Cucumis melo])

HSP 1 Score: 480.7 bits (1236), Expect = 1.6e-132
Identity = 249/258 (96.51%), Postives = 250/258 (96.90%), Query Frame = 1 

Query: 1   MRLKINKACDLSSISVLPPQ---LNALTTGQQAPQLRSQPSQQSFSQGLSSQHGMYSQLS 60
           MRLKINKACDLSSISVLPPQ   LNALTTGQQAPQLRSQPSQQSFSQGLSSQHGMYSQLS
Sbjct: 1   MRLKINKACDLSSISVLPPQSRRLNALTTGQQAPQLRSQPSQQSFSQGLSSQHGMYSQLS 60

Query: 61  QNSFDEVVTNEQRFSSQDRENSIKKNSFFPPLSYSKEDCQLGLSKSSTSLTQKWRPSPLT 120
           QNSFDEVVTNEQRFSSQDRENSIKKNSFFPPLSYSKEDCQLGLSKSSTSLTQKWRPSPLT
Sbjct: 61  QNSFDEVVTNEQRFSSQDRENSIKKNSFFPPLSYSKEDCQLGLSKSSTSLTQKWRPSPLT 120

Query: 121 DSKCQVGEELDRRLGTIENSLNKFGKILDSLLSDILQLNKGMKQVSLDVESIWQKMLVNS 180
           DSKCQVGEELDRRLGTIENSLNKFGKILDSLLSDILQLNKGMKQVSLDVESIWQKMLVNS
Sbjct: 121 DSKCQVGEELDRRLGTIENSLNKFGKILDSLLSDILQLNKGMKQVSLDVESIWQKMLVNS 180

Query: 181 SLLQSMNKDHDDMKAIIDGGFKLISDQLKKDAYQERLHEISDFLSSLEKQVQASQLKLKN 240
           SLLQSMNKDHDDMKAIIDGGFKLISDQLKKDAYQERLHEISDFLSSLEKQVQASQLKLKN
Sbjct: 181 SLLQSMNKDHDDMKAIIDGGFKLISDQLKKDAYQERLHEISDFLSSLEKQVQASQLKLKN 240

Query: 241 DFISTFTKEMKVSACCVK 256
           DFISTFTKEMK     +K
Sbjct: 241 DFISTFTKEMKAMISTLK 258

[Close]
BLAST of MELO3C006108 vs. NCBI nr
Match: gi|659075258|ref|XP_008438048.1| (PREDICTED: protein PAIR1 isoform X3 [Cucumis melo])

HSP 1 Score: 480.7 bits (1236), Expect = 1.6e-132
Identity = 249/258 (96.51%), Postives = 250/258 (96.90%), Query Frame = 1 

Query: 1   MRLKINKACDLSSISVLPPQ---LNALTTGQQAPQLRSQPSQQSFSQGLSSQHGMYSQLS 60
           MRLKINKACDLSSISVLPPQ   LNALTTGQQAPQLRSQPSQQSFSQGLSSQHGMYSQLS
Sbjct: 1   MRLKINKACDLSSISVLPPQSRRLNALTTGQQAPQLRSQPSQQSFSQGLSSQHGMYSQLS 60

Query: 61  QNSFDEVVTNEQRFSSQDRENSIKKNSFFPPLSYSKEDCQLGLSKSSTSLTQKWRPSPLT 120
           QNSFDEVVTNEQRFSSQDRENSIKKNSFFPPLSYSKEDCQLGLSKSSTSLTQKWRPSPLT
Sbjct: 61  QNSFDEVVTNEQRFSSQDRENSIKKNSFFPPLSYSKEDCQLGLSKSSTSLTQKWRPSPLT 120

Query: 121 DSKCQVGEELDRRLGTIENSLNKFGKILDSLLSDILQLNKGMKQVSLDVESIWQKMLVNS 180
           DSKCQVGEELDRRLGTIENSLNKFGKILDSLLSDILQLNKGMKQVSLDVESIWQKMLVNS
Sbjct: 121 DSKCQVGEELDRRLGTIENSLNKFGKILDSLLSDILQLNKGMKQVSLDVESIWQKMLVNS 180

Query: 181 SLLQSMNKDHDDMKAIIDGGFKLISDQLKKDAYQERLHEISDFLSSLEKQVQASQLKLKN 240
           SLLQSMNKDHDDMKAIIDGGFKLISDQLKKDAYQERLHEISDFLSSLEKQVQASQLKLKN
Sbjct: 181 SLLQSMNKDHDDMKAIIDGGFKLISDQLKKDAYQERLHEISDFLSSLEKQVQASQLKLKN 240

Query: 241 DFISTFTKEMKVSACCVK 256
           DFISTFTKEMK     +K
Sbjct: 241 DFISTFTKEMKAMISTLK 258

[Close]
BLAST of MELO3C006108 vs. NCBI nr
Match: gi|659075256|ref|XP_008438047.1| (PREDICTED: protein PAIR1 isoform X2 [Cucumis melo])

HSP 1 Score: 480.7 bits (1236), Expect = 1.6e-132
Identity = 249/258 (96.51%), Postives = 250/258 (96.90%), Query Frame = 1 

Query: 1   MRLKINKACDLSSISVLPPQ---LNALTTGQQAPQLRSQPSQQSFSQGLSSQHGMYSQLS 60
           MRLKINKACDLSSISVLPPQ   LNALTTGQQAPQLRSQPSQQSFSQGLSSQHGMYSQLS
Sbjct: 1   MRLKINKACDLSSISVLPPQSRRLNALTTGQQAPQLRSQPSQQSFSQGLSSQHGMYSQLS 60

Query: 61  QNSFDEVVTNEQRFSSQDRENSIKKNSFFPPLSYSKEDCQLGLSKSSTSLTQKWRPSPLT 120
           QNSFDEVVTNEQRFSSQDRENSIKKNSFFPPLSYSKEDCQLGLSKSSTSLTQKWRPSPLT
Sbjct: 61  QNSFDEVVTNEQRFSSQDRENSIKKNSFFPPLSYSKEDCQLGLSKSSTSLTQKWRPSPLT 120

Query: 121 DSKCQVGEELDRRLGTIENSLNKFGKILDSLLSDILQLNKGMKQVSLDVESIWQKMLVNS 180
           DSKCQVGEELDRRLGTIENSLNKFGKILDSLLSDILQLNKGMKQVSLDVESIWQKMLVNS
Sbjct: 121 DSKCQVGEELDRRLGTIENSLNKFGKILDSLLSDILQLNKGMKQVSLDVESIWQKMLVNS 180

Query: 181 SLLQSMNKDHDDMKAIIDGGFKLISDQLKKDAYQERLHEISDFLSSLEKQVQASQLKLKN 240
           SLLQSMNKDHDDMKAIIDGGFKLISDQLKKDAYQERLHEISDFLSSLEKQVQASQLKLKN
Sbjct: 181 SLLQSMNKDHDDMKAIIDGGFKLISDQLKKDAYQERLHEISDFLSSLEKQVQASQLKLKN 240

Query: 241 DFISTFTKEMKVSACCVK 256
           DFISTFTKEMK     +K
Sbjct: 241 DFISTFTKEMKAMISTLK 258

[Close]
BLAST of MELO3C006108 vs. NCBI nr
Match: gi|659075251|ref|XP_008438045.1| (PREDICTED: protein PAIR1 isoform X1 [Cucumis melo])

HSP 1 Score: 480.7 bits (1236), Expect = 1.6e-132
Identity = 249/258 (96.51%), Postives = 250/258 (96.90%), Query Frame = 1 

Query: 1   MRLKINKACDLSSISVLPPQ---LNALTTGQQAPQLRSQPSQQSFSQGLSSQHGMYSQLS 60
           MRLKINKACDLSSISVLPPQ   LNALTTGQQAPQLRSQPSQQSFSQGLSSQHGMYSQLS
Sbjct: 1   MRLKINKACDLSSISVLPPQSRRLNALTTGQQAPQLRSQPSQQSFSQGLSSQHGMYSQLS 60

Query: 61  QNSFDEVVTNEQRFSSQDRENSIKKNSFFPPLSYSKEDCQLGLSKSSTSLTQKWRPSPLT 120
           QNSFDEVVTNEQRFSSQDRENSIKKNSFFPPLSYSKEDCQLGLSKSSTSLTQKWRPSPLT
Sbjct: 61  QNSFDEVVTNEQRFSSQDRENSIKKNSFFPPLSYSKEDCQLGLSKSSTSLTQKWRPSPLT 120

Query: 121 DSKCQVGEELDRRLGTIENSLNKFGKILDSLLSDILQLNKGMKQVSLDVESIWQKMLVNS 180
           DSKCQVGEELDRRLGTIENSLNKFGKILDSLLSDILQLNKGMKQVSLDVESIWQKMLVNS
Sbjct: 121 DSKCQVGEELDRRLGTIENSLNKFGKILDSLLSDILQLNKGMKQVSLDVESIWQKMLVNS 180

Query: 181 SLLQSMNKDHDDMKAIIDGGFKLISDQLKKDAYQERLHEISDFLSSLEKQVQASQLKLKN 240
           SLLQSMNKDHDDMKAIIDGGFKLISDQLKKDAYQERLHEISDFLSSLEKQVQASQLKLKN
Sbjct: 181 SLLQSMNKDHDDMKAIIDGGFKLISDQLKKDAYQERLHEISDFLSSLEKQVQASQLKLKN 240

Query: 241 DFISTFTKEMKVSACCVK 256
           DFISTFTKEMK     +K
Sbjct: 241 DFISTFTKEMKAMISTLK 258

[Close]
BLAST of MELO3C006108 vs. NCBI nr
Match: gi|778677212|ref|XP_011650752.1| (PREDICTED: protein PAIR1 isoform X2 [Cucumis sativus])

HSP 1 Score: 469.5 bits (1207), Expect = 3.7e-129
Identity = 242/258 (93.80%), Postives = 247/258 (95.74%), Query Frame = 1 

Query: 1   MRLKINKACDLSSISVLPPQ---LNALTTGQQAPQLRSQPSQQSFSQGLSSQHGMYSQLS 60
           MRLKINKACDLSSISVLPPQ   LNALTTGQQA QLRSQPSQQSFSQGLSSQHGMYSQLS
Sbjct: 1   MRLKINKACDLSSISVLPPQSRRLNALTTGQQASQLRSQPSQQSFSQGLSSQHGMYSQLS 60

Query: 61  QNSFDEVVTNEQRFSSQDRENSIKKNSFFPPLSYSKEDCQLGLSKSSTSLTQKWRPSPLT 120
           QNSFDEVVTNEQRFSSQDRENSIKKNSFFPP+SYSKED QLG+SKSSTSLTQKWRPSPL 
Sbjct: 61  QNSFDEVVTNEQRFSSQDRENSIKKNSFFPPVSYSKEDSQLGISKSSTSLTQKWRPSPLP 120

Query: 121 DSKCQVGEELDRRLGTIENSLNKFGKILDSLLSDILQLNKGMKQVSLDVESIWQKMLVNS 180
           DSKCQVGEELDRRLGTIENS+NKFGKILDSLLSDILQLNKGMKQVSLDVESIWQKML+NS
Sbjct: 121 DSKCQVGEELDRRLGTIENSVNKFGKILDSLLSDILQLNKGMKQVSLDVESIWQKMLINS 180

Query: 181 SLLQSMNKDHDDMKAIIDGGFKLISDQLKKDAYQERLHEISDFLSSLEKQVQASQLKLKN 240
           S LQSMNKDHDDMKAIIDGGFKLISDQLKKDAYQERLHEISDFLSSLEKQVQASQLKLKN
Sbjct: 181 SSLQSMNKDHDDMKAIIDGGFKLISDQLKKDAYQERLHEISDFLSSLEKQVQASQLKLKN 240

Query: 241 DFISTFTKEMKVSACCVK 256
           DFISTFTKEMK   C +K
Sbjct: 241 DFISTFTKEMKAMICTLK 258

The following BLAST results are available for this feature:
BLAST of MELO3C006108 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PAIR1_ORYSJ5.0e-3339.77Protein PAIR1 OS=Oryza sativa subsp. japonica GN=PAIR1 PE=1 SV=1[more]
BLAST of MELO3C006108 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L487_CUCSA1.9e-11994.07Uncharacterized protein OS=Cucumis sativus GN=Csa_3G122370 PE=4 SV=1[more]
A0A067JXJ9_JATCU3.8e-7254.65Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14393 PE=4 SV=1[more]
B9RDS5_RICCO9.3e-7155.60Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1615290 PE=4 SV=1[more]
A0A061DV47_THECC7.9e-7052.71Recombination initiation defects 3, putative isoform 1 OS=Theobroma cacao GN=TCM... [more]
A0A061DU76_THECC7.9e-7052.71Recombination initiation defects 3, putative isoform 2 OS=Theobroma cacao GN=TCM... [more]
BLAST of MELO3C006108 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G01690.13.9e-6045.88 putative recombination initiation defects 3[more]
BLAST of MELO3C006108 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659075260|ref|XP_008438049.1|1.6e-13296.51PREDICTED: protein PAIR1 isoform X4 [Cucumis melo][more]
gi|659075258|ref|XP_008438048.1|1.6e-13296.51PREDICTED: protein PAIR1 isoform X3 [Cucumis melo][more]
gi|659075256|ref|XP_008438047.1|1.6e-13296.51PREDICTED: protein PAIR1 isoform X2 [Cucumis melo][more]
gi|659075251|ref|XP_008438045.1|1.6e-13296.51PREDICTED: protein PAIR1 isoform X1 [Cucumis melo][more]
gi|778677212|ref|XP_011650752.1|3.7e-12993.80PREDICTED: protein PAIR1 isoform X2 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0048856 anatomical structure development
biological_process GO:0048229 gametophyte development
biological_process GO:0007127 meiosis I
biological_process GO:0090304 nucleic acid metabolic process
biological_process GO:0044710 single-organism metabolic process
biological_process GO:0044699 single-organism process
biological_process GO:1903046 meiotic cell cycle process
biological_process GO:0008150 biological_process
biological_process GO:0070192 chromosome organization involved in meiotic cell cycle
biological_process GO:0048236 plant-type spore development
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C006108T1MELO3C006108T1mRNA


InterPro
Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR37695FAMILY NOT NAMEDcoord: 2..259
score: 4.5
NoneNo IPR availablePANTHERPTHR37695:SF1RECOMBINATION INITIATION DEFECTS 3-RELATEDcoord: 2..259
score: 4.5

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
MELO3C006108Csa3G122370Cucumber (Chinese Long) v2cumeB236
MELO3C006108Cla021235Watermelon (97103) v1mewmB461
MELO3C006108ClCG05G001510Watermelon (Charleston Gray)mewcgB427
MELO3C006108Cla97C05G081880Watermelon (97103) v2mewmbB434
MELO3C006108Bhi01G000252Wax gourdmewgoB533
MELO3C006108CSPI03G08760Wild cucumber (PI 183967)cpimeB230
MELO3C006108Cucsa.258400Cucumber (Gy14) v1cgymeB439
MELO3C006108CmaCh14G020410Cucurbita maxima (Rimu)cmameB242
MELO3C006108CmaCh06G010680Cucurbita maxima (Rimu)cmameB769
MELO3C006108CmoCh14G021030Cucurbita moschata (Rifu)cmomeB230
MELO3C006108CmoCh06G010930Cucurbita moschata (Rifu)cmomeB759
MELO3C006108Lsi05G020420Bottle gourd (USVL1VR-Ls)lsimeB378
MELO3C006108Cp4.1LG08g01280Cucurbita pepo (Zucchini)cpemeB809
MELO3C006108Cp4.1LG03g16670Cucurbita pepo (Zucchini)cpemeB585
MELO3C006108CsGy3G008850Cucumber (Gy14) v2cgybmeB200
MELO3C006108Carg24648Silver-seed gourdcarmeB0389
MELO3C006108Carg20998Silver-seed gourdcarmeB0497
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C006108Cucumber (Chinese Long) v3cucmeB236
MELO3C006108Cucumber (Chinese Long) v3cucmeB413
MELO3C006108Melon (DHL92) v3.5.1memeB150
MELO3C006108Cucurbita maxima (Rimu)cmameB281
MELO3C006108Cucurbita maxima (Rimu)cmameB581
MELO3C006108Cucurbita maxima (Rimu)cmameB763
MELO3C006108Cucurbita moschata (Rifu)cmomeB755
MELO3C006108Watermelon (Charleston Gray)mewcgB430
MELO3C006108Watermelon (97103) v1mewmB466