MELO3C006048.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C006048.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionUnknown protein
Locationchr06 : 768894 .. 769058 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGAACAAACCTTGTAAAAGGCCTCCTGAGCAGGCAGCTGAAAATGGGGTAGGAGTAGATTCGATGAAGAACCCTCAGATGCAGGTGGAAAAGCAAAAGAGAATGAAAGAAATGAGAAACAGAGCAACCCCTTTTATCATTCAAGCAGTGGAATGGGGATGA

mRNA sequence

ATGATGAACAAACCTTGTAAAAGGCCTCCTGAGCAGGCAGCTGAAAATGGGGTAGGAGTAGATTCGATGAAGAACCCTCAGATGCAGGTGGAAAAGCAAAAGAGAATGAAAGAAATGAGAAACAGAGCAACCCCTTTTATCATTCAAGCAGTGGAATGGGGATGA

Coding sequence (CDS)

ATGATGAACAAACCTTGTAAAAGGCCTCCTGAGCAGGCAGCTGAAAATGGGGTAGGAGTAGATTCGATGAAGAACCCTCAGATGCAGGTGGAAAAGCAAAAGAGAATGAAAGAAATGAGAAACAGAGCAACCCCTTTTATCATTCAAGCAGTGGAATGGGGATGA

Protein sequence

MMNKPCKRPPEQAAENGVGVDSMKNPQMQVEKQKRMKEMRNRATPFIIQAVEWG
Homology
[Close]
BLAST of MELO3C006048.2 vs. NCBI nr
Match: KGN56449.1 (hypothetical protein Csa_3G119800 [Cucumis sativus])

HSP 1 Score: 97.1 bits (240), Expect = 2.0e-17
Identity = 49/55 (89.09%), Postives = 50/55 (90.91%), Query Frame = 0 

Query: 2  MNKPCKRPPEQAAENGVGVDSMKNPQMQVEKQKRMKEMRNRATPFIIQAV--EWG 55
          MNKPCKRPPEQAAENGV  DSMKNPQMQVEKQK +KEMRNRATPFIIQAV  EWG
Sbjct: 1  MNKPCKRPPEQAAENGVRADSMKNPQMQVEKQKGVKEMRNRATPFIIQAVESEWG 55

[Close]
BLAST of MELO3C006048.2 vs. TrEMBL
Match: tr|A0A0A0L5Z7|A0A0A0L5Z7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G119800 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 1.3e-17
Identity = 49/55 (89.09%), Postives = 50/55 (90.91%), Query Frame = 0 

Query: 2  MNKPCKRPPEQAAENGVGVDSMKNPQMQVEKQKRMKEMRNRATPFIIQAV--EWG 55
          MNKPCKRPPEQAAENGV  DSMKNPQMQVEKQK +KEMRNRATPFIIQAV  EWG
Sbjct: 1  MNKPCKRPPEQAAENGVRADSMKNPQMQVEKQKGVKEMRNRATPFIIQAVESEWG 55

The following BLAST results are available for this feature:
BLAST of MELO3C006048.2 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN56449.12.0e-1789.09hypothetical protein Csa_3G119800 [Cucumis sativus][more]
BLAST of MELO3C006048.2 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of MELO3C006048.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of MELO3C006048.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0L5Z7|A0A0A0L5Z7_CUCSA1.3e-1789.09Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G119800 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C006048.2.1MELO3C006048.2.1mRNA


InterPro
Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..41

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
MELO3C006048.2Csa3G119800Cucumber (Chinese Long) v2cumedB223
MELO3C006048.2CSPI03G08160Wild cucumber (PI 183967)cpimedB224
MELO3C006048.2CsaV3_3G008310Cucumber (Chinese Long) v3cucmedB230
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C006048.2Cucumber (Gy14) v2cgybmedB201
MELO3C006048.2Cucumber (Gy14) v2cgybmedB250
MELO3C006048.2Cucumber (Gy14) v2cgybmedB349
MELO3C006048.2Cucumber (Gy14) v1cgymedB139
MELO3C006048.2Cucumber (Gy14) v1cgymedB366
MELO3C006048.2Cucumber (Gy14) v1cgymedB432
MELO3C006048.2Cucurbita maxima (Rimu)cmamedB273
MELO3C006048.2Cucurbita maxima (Rimu)cmamedB338
MELO3C006048.2Cucurbita maxima (Rimu)cmamedB341
MELO3C006048.2Cucurbita maxima (Rimu)cmamedB435
MELO3C006048.2Cucurbita maxima (Rimu)cmamedB664
MELO3C006048.2Cucurbita maxima (Rimu)cmamedB776
MELO3C006048.2Cucurbita maxima (Rimu)cmamedB863
MELO3C006048.2Cucurbita maxima (Rimu)cmamedB871
MELO3C006048.2Cucurbita maxima (Rimu)cmamedB955
MELO3C006048.2Cucurbita moschata (Rifu)cmomedB260
MELO3C006048.2Cucurbita moschata (Rifu)cmomedB327
MELO3C006048.2Cucurbita moschata (Rifu)cmomedB424
MELO3C006048.2Cucurbita moschata (Rifu)cmomedB653
MELO3C006048.2Cucurbita moschata (Rifu)cmomedB773
MELO3C006048.2Cucurbita moschata (Rifu)cmomedB857
MELO3C006048.2Cucurbita pepo (Zucchini)cpemedB049
MELO3C006048.2Cucurbita pepo (Zucchini)cpemedB225
MELO3C006048.2Cucurbita pepo (Zucchini)cpemedB230
MELO3C006048.2Cucurbita pepo (Zucchini)cpemedB373
MELO3C006048.2Cucurbita pepo (Zucchini)cpemedB693
MELO3C006048.2Cucurbita pepo (Zucchini)cpemedB832
MELO3C006048.2Cucurbita pepo (Zucchini)cpemedB951
MELO3C006048.2Wild cucumber (PI 183967)cpimedB285
MELO3C006048.2Wild cucumber (PI 183967)cpimedB394
MELO3C006048.2Cucumber (Chinese Long) v2cumedB281
MELO3C006048.2Cucumber (Chinese Long) v2cumedB386
MELO3C006048.2Melon (DHL92) v3.6.1medmedB016
MELO3C006048.2Melon (DHL92) v3.6.1medmedB148
MELO3C006048.2Melon (DHL92) v3.6.1medmedB149
MELO3C006048.2Bottle gourd (USVL1VR-Ls)lsimedB033
MELO3C006048.2Bottle gourd (USVL1VR-Ls)lsimedB396
MELO3C006048.2Watermelon (Charleston Gray)medwcgB407
MELO3C006048.2Watermelon (Charleston Gray)medwcgB416
MELO3C006048.2Watermelon (Charleston Gray)medwcgB428
MELO3C006048.2Watermelon (97103) v1medwmB447
MELO3C006048.2Watermelon (97103) v1medwmB456
MELO3C006048.2Watermelon (97103) v1medwmB465
MELO3C006048.2Silver-seed gourdcarmedB0503
MELO3C006048.2Silver-seed gourdcarmedB0978
MELO3C006048.2Cucumber (Chinese Long) v3cucmedB289
MELO3C006048.2Cucumber (Chinese Long) v3cucmedB404
MELO3C006048.2Watermelon (97103) v2medwmbB407
MELO3C006048.2Watermelon (97103) v2medwmbB423
MELO3C006048.2Watermelon (97103) v2medwmbB432
MELO3C006048.2Wax gourdmedwgoB525
MELO3C006048.2Wax gourdmedwgoB542
MELO3C006048.2Wax gourdmedwgoB551