MELO3C006048 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C006048
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionProbable ATP-dependent RNA helicase DDX60
Locationchr6 : 768782 .. 768946 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGAACAAACCTTGTAAAAGGCCTCCTGAGCAGGCAGCTGAAAATGGGGTAGGAGTAGATTCGATGAAGAACCCTCAGATGCAGGTGGAAAAGCAAAAGAGAATGAAAGAAATGAGAAACAGAGCAACCCCTTTTATCATTCAAGCAGTGGAATGGGGATGA

mRNA sequence

ATGATGAACAAACCTTGTAAAAGGCCTCCTGAGCAGGCAGCTGAAAATGGGGTAGGAGTAGATTCGATGAAGAACCCTCAGATGCAGGTGGAAAAGCAAAAGAGAATGAAAGAAATGAGAAACAGAGCAACCCCTTTTATCATTCAAGCAGTGGAATGGGGATGA

Coding sequence (CDS)

ATGATGAACAAACCTTGTAAAAGGCCTCCTGAGCAGGCAGCTGAAAATGGGGTAGGAGTAGATTCGATGAAGAACCCTCAGATGCAGGTGGAAAAGCAAAAGAGAATGAAAGAAATGAGAAACAGAGCAACCCCTTTTATCATTCAAGCAGTGGAATGGGGATGA

Protein sequence

MMNKPCKRPPEQAAENGVGVDSMKNPQMQVEKQKRMKEMRNRATPFIIQAVEWG*
Homology
[Close]
BLAST of MELO3C006048 vs. TrEMBL
Match: A0A0A0L5Z7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G119800 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 1.1e-18
Identity = 49/55 (89.09%), Postives = 50/55 (90.91%), Query Frame = 1 

Query: 2  MNKPCKRPPEQAAENGVGVDSMKNPQMQVEKQKRMKEMRNRATPFIIQAV--EWG 55
          MNKPCKRPPEQAAENGV  DSMKNPQMQVEKQK +KEMRNRATPFIIQAV  EWG
Sbjct: 1  MNKPCKRPPEQAAENGVRADSMKNPQMQVEKQKGVKEMRNRATPFIIQAVESEWG 55

[Close]
BLAST of MELO3C006048 vs. NCBI nr
Match: gi|700201316|gb|KGN56449.1| (hypothetical protein Csa_3G119800 [Cucumis sativus])

HSP 1 Score: 99.8 bits (247), Expect = 1.6e-18
Identity = 49/55 (89.09%), Postives = 50/55 (90.91%), Query Frame = 1 

Query: 2  MNKPCKRPPEQAAENGVGVDSMKNPQMQVEKQKRMKEMRNRATPFIIQAV--EWG 55
          MNKPCKRPPEQAAENGV  DSMKNPQMQVEKQK +KEMRNRATPFIIQAV  EWG
Sbjct: 1  MNKPCKRPPEQAAENGVRADSMKNPQMQVEKQKGVKEMRNRATPFIIQAVESEWG 55

The following BLAST results are available for this feature:
BLAST of MELO3C006048 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L5Z7_CUCSA1.1e-1889.09Uncharacterized protein OS=Cucumis sativus GN=Csa_3G119800 PE=4 SV=1[more]
BLAST of MELO3C006048 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700201316|gb|KGN56449.1|1.6e-1889.09hypothetical protein Csa_3G119800 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C006048T1MELO3C006048T1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
MELO3C006048Csa3G119800Cucumber (Chinese Long) v2cumeB236
MELO3C006048CSPI03G08160Wild cucumber (PI 183967)cpimeB230
MELO3C006048CsaV3_3G008310Cucumber (Chinese Long) v3cucmeB236
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C006048Wax gourdmewgoB523
MELO3C006048Wax gourdmewgoB540
MELO3C006048Wax gourdmewgoB550
MELO3C006048Melon (DHL92) v3.5.1memeB018
MELO3C006048Melon (DHL92) v3.5.1memeB150
MELO3C006048Melon (DHL92) v3.5.1memeB151
MELO3C006048Cucumber (Gy14) v1cgymeB139
MELO3C006048Cucumber (Gy14) v1cgymeB439
MELO3C006048Cucurbita maxima (Rimu)cmameB242
MELO3C006048Cucurbita maxima (Rimu)cmameB770
MELO3C006048Cucurbita moschata (Rifu)cmomeB230
MELO3C006048Cucurbita moschata (Rifu)cmomeB755
MELO3C006048Wild cucumber (PI 183967)cpimeB291
MELO3C006048Wild cucumber (PI 183967)cpimeB399
MELO3C006048Cucumber (Chinese Long) v2cumeB297
MELO3C006048Cucumber (Chinese Long) v2cumeB402
MELO3C006048Watermelon (Charleston Gray)mewcgB420
MELO3C006048Watermelon (Charleston Gray)mewcgB427
MELO3C006048Watermelon (Charleston Gray)mewcgB430
MELO3C006048Watermelon (97103) v1mewmB478
MELO3C006048Watermelon (97103) v1mewmB461
MELO3C006048Watermelon (97103) v1mewmB466
MELO3C006048Cucurbita pepo (Zucchini)cpemeB585
MELO3C006048Cucurbita pepo (Zucchini)cpemeB698
MELO3C006048Cucurbita pepo (Zucchini)cpemeB815
MELO3C006048Bottle gourd (USVL1VR-Ls)lsimeB031
MELO3C006048Bottle gourd (USVL1VR-Ls)lsimeB378
MELO3C006048Cucumber (Gy14) v2cgybmeB200
MELO3C006048Cucumber (Gy14) v2cgybmeB252
MELO3C006048Cucumber (Gy14) v2cgybmeB349
MELO3C006048Silver-seed gourdcarmeB0497
MELO3C006048Silver-seed gourdcarmeB0968
MELO3C006048Cucumber (Chinese Long) v3cucmeB297
MELO3C006048Cucumber (Chinese Long) v3cucmeB411
MELO3C006048Watermelon (97103) v2mewmbB421
MELO3C006048Watermelon (97103) v2mewmbB434
MELO3C006048Watermelon (97103) v2mewmbB439