MELO3C005936 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C005936
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Transcription factor 25
Location	chr6 : 71147 .. 74193 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCCGCTCGGCTGCTCAAAAAGGTTTTAAAGGAACAGGAGGAGCTTCGACAGCACTATTCTCAATCCTCCACCACTGAAGACGGACAGGATTCTGGTTCTGGGCCATCGTCACCTACTGCTTCTTCTATCAATCCCTTCGACCTCCTTATCGATGAAGAAGATGACTCCCAAATTGACCCTCACCAGGTTTCTTATTTCATTCCCCTCTTCAACTTTGCTGAATTCTCAACTTTTCACATGCCTGCACTCTAATTATTTGGGAGACTGGAGCCTTCTCAATTTCTATAAATTTTAAGCATATTTACACAACTGTGAAAGTTGATACTTCAATGGTTCCTTCCGCAACTATGTGCACCCGATTATAAACGCACGAATTGTTGTTTGATTTTGCAGTATACTAATTATATATTTGGTTTTCCATATATATTCCGAAGCTTATGTCTTTCCGGAAGTAGGCTGTCGAAATGTTTCTTTTTTTCGAATTAAAACACATTTGTAATTTAGACAGCTGTAAACTTATTCCGACAGTAAACATTAGAATTTAGAAATATGACGAACAGTTTTTAAAAACCTATTGATCTTTTTTGTTTTTTTAGAAGCACCCATTCATTGAAAATGATGAGTTGGCTTGCGTTCATCTTTTGTGTTGAATATACCGAATGATGAAGAATTAAAAACCCGGAATTTGAAAGGCATTCTTCTAAACAAACTTTTAAACAACTTATCTTCTTTTTTCTTGGGTCAAACTATATTTTATACTGTTTTTTGTCCACCAGTTTCACCTTTGGCCAATTTATGCCACAATTCTTAACCATTTTTTAAGCCAGAGGTGGTTGACTTGAGCTTAATATTAGTACATAACTACTAGTTCTACTTTGTGTGTGTGCGTGCACACAACATGCGGGGGGACGGAGAACTTACAAAGACAAAAAACGCAACTTTTTGTTATTGAAATAAAGGACAATTGCATTGCATCACAAATTTAAGTCAAGAACAAGGAAAGCATTGAACTGCACAAAATTTGGGACCCTTCTAATAGGTACATGAGTTGATTTATTATTTTTCCTTCAACTTTTGTCATCATTTCTTGCTAGACAATGGACTCGTTTTGAATTTGGGGTATGAATTTAAGTTAATTTATTATTATTCTTCAACCTTTTGTCATCAAAAGCTTCTCGAACGAAGTCTCCTTTGAAGCCTGTCAGTGCGTGTTGTAGTTTTGGGCATTGTTTCCTCTTTCTTCACTTTCAATGGGTTTTTGGTTTCTCGTTGAAGGTTAACTGTTCCCATTTGGTTGGGCTCTTCAGAAGTTTTTCTCTCAATTGTTTTGTGTTTGTTTACATTGAGGAGTTTTGCTTTGCATTTCTGAAACAAATTTCTTGATTTGTCCTCATAAAATTTTTCATTCTCAATAATACGAAATAAATAAAATAATGATACCATTGTAACATAATAATCTCCCTTAGTTTAGCCGTTCCCTTGTTTTCTTTGTTTTCAACTTTTTTGCCCAACAGGCTGTCATTTGTCAACAGGACAATGACCGGGAGGCGGTTGAGGAAATCTCCGTGGACAGTCGCAAGCAGTTTGTGCGCAATGGAGCTAAAAGTGCTATTTCAACATCAAATAAAAAATTGAAAAAAAAGAAAAAGAAGAAGGAGCGTGAGAGTTTTTCTTCCACAACAGATAGAATCCTTGACAAACCCTTGGATGTGCTTCTCAAATCTCTGTCTCTGGATATTGATCCCTCTGCTATAAGCAGTCCACAGGGCCCTGAGAAAGCCAAAAATGGTGCAGAAGAAAGTGGAAAACAATGTATGCCGTCACTATTAGAAGTGGAGCCTAAATATTTAAATGCCGGAAATGAACTGCGAAGAATATTTGGTGCTAAGGTAGTAAAATCATTTGAAAAAAATAACCAGGCCAGTAGTTCTAGACAACTACGTGGGGGAAGACGTGTCAACCATCTTTCTAGGAAGACCTATCTTGTAAGTCCATCAGATCATTGGCCTCGTTGGGATGGTTCTCTTTCCATGGAGTATTTGGAGTCGAGGAATGGATATCACTACTTCAGGTAAATTTCATTTTCATTTATAGTTTCTTTTTTACCCCTTGCTCCCTAAAGCATTTACTGAATTTAAGTAGAATTAAACTAGCATCGGATTACTGTATATGTGTGTCCAGCCTGCTAGGTTTTGACGAATGATTTGTCCAGCAAGGCTACTACATGTATTACCTGAATATTAAATTGAACTTCTAAGTAACTGTATAAAGCTCGTCTTTCTTGGTTGAAGATTTAATAAGTTGAATGAACTGCAATTTTATGAATCTATTATCGTCTTTTTTTGTCAATTTTCATTTATAATATGCAAGGACTCCCTTTGTGGAGACACACAAACTTTACTAATAATGATAATCAAAATACAAGATAATCTCCTTTTGAGAGGGAGGAACTCTCCAGGATACAACTTAATACATAATACTAGCATAACCCCAAAACAGGATCACGAAACTATATATAACAGCCAAGCAACCTGACCTACTAACTTAACCTTGGTTAGGTGAATTCTCCATTCTACCCCTCCTAGCATACGTGTACACAATTTGGGGCATAACATAATGTTTGTATATGTAGATAATTGTGCCTCCCATCTCTCTCTCCCTCCCCCCCCCCCCCCCAAGATAGAAAGAAAAAACATTTTCCCTTTTGGGGTTTAATTAAATAACATAACGTTTAATTACATTCCTCGTGTTCAATAAATGTCGATCATATTTTCTTTTTCCCTTTATTTTTCTGAATTATTTCCAATTGTGTTTTGACCCTCGTGTTTCATCTTTTTGTACGTTTCTTATTAGCTTTTCTATAAGTTAGTGTCAGCCGTTAAAATATGTTAATCTAAATGTAGTGTTTTGATTGTAATGTAATGAATTCCAGATATGTACACCTGCCATCCTATGTGAAGCTCAGAAAGCATTTGAAGCCGCCAGATCTATTCATGACCTCAATGGCATTGCCAGTATTCTGTTGTACCACCCATATCACTTAG

mRNA sequence

ATGTCCGCTCGGCTGCTCAAAAAGGTTTTAAAGGAACAGGAGGAGCTTCGACAGCACTATTCTCAATCCTCCACCACTGAAGACGGACAGGATTCTGGTTCTGGGCCATCGTCACCTACTGCTTCTTCTATCAATCCCTTCGACCTCCTTATCGATGAAGAAGATGACTCCCAAATTGACCCTCACCAGGACAATGACCGGGAGGCGGTTGAGGAAATCTCCGTGGACAGTCGCAAGCAGTTTGTGCGCAATGGAGCTAAAAGTGCTATTTCAACATCAAATAAAAAATTGAAAAAAAAGAAAAAGAAGAAGGAGCGTGAGAGTTTTTCTTCCACAACAGATAGAATCCTTGACAAACCCTTGGATGTGCTTCTCAAATCTCTGTCTCTGGATATTGATCCCTCTGCTATAAGCAGTCCACAGGGCCCTGAGAAAGCCAAAAATGGTGCAGAAGAAAGTGGAAAACAATGTATGCCGTCACTATTAGAAGTGGAGCCTAAATATTTAAATGCCGGAAATGAACTGCGAAGAATATTTGGTGCTAAGGTAGTAAAATCATTTGAAAAAAATAACCAGGCCAGTAGTTCTAGACAACTACGTGGGGGAAGACGTGTCAACCATCTTTCTAGGAAGACCTATCTTGTAAGTCCATCAGATCATTGGCCTCGTTGGGATGGTTCTCTTTCCATGGAGTATTTGGAGTCGAGGAATGGATATCACTACTTCAGATATGTACACCTGCCATCCTATGTGAAGCTCAGAAAGCATTTGAAGCCGCCAGATCTATTCATGACCTCAATGGCATTGCCAGTATTCTGTTGTACCACCCATATCACTTAG

Coding sequence (CDS)

ATGTCCGCTCGGCTGCTCAAAAAGGTTTTAAAGGAACAGGAGGAGCTTCGACAGCACTATTCTCAATCCTCCACCACTGAAGACGGACAGGATTCTGGTTCTGGGCCATCGTCACCTACTGCTTCTTCTATCAATCCCTTCGACCTCCTTATCGATGAAGAAGATGACTCCCAAATTGACCCTCACCAGGACAATGACCGGGAGGCGGTTGAGGAAATCTCCGTGGACAGTCGCAAGCAGTTTGTGCGCAATGGAGCTAAAAGTGCTATTTCAACATCAAATAAAAAATTGAAAAAAAAGAAAAAGAAGAAGGAGCGTGAGAGTTTTTCTTCCACAACAGATAGAATCCTTGACAAACCCTTGGATGTGCTTCTCAAATCTCTGTCTCTGGATATTGATCCCTCTGCTATAAGCAGTCCACAGGGCCCTGAGAAAGCCAAAAATGGTGCAGAAGAAAGTGGAAAACAATGTATGCCGTCACTATTAGAAGTGGAGCCTAAATATTTAAATGCCGGAAATGAACTGCGAAGAATATTTGGTGCTAAGGTAGTAAAATCATTTGAAAAAAATAACCAGGCCAGTAGTTCTAGACAACTACGTGGGGGAAGACGTGTCAACCATCTTTCTAGGAAGACCTATCTTGTAAGTCCATCAGATCATTGGCCTCGTTGGGATGGTTCTCTTTCCATGGAGTATTTGGAGTCGAGGAATGGATATCACTACTTCAGATATGTACACCTGCCATCCTATGTGAAGCTCAGAAAGCATTTGAAGCCGCCAGATCTATTCATGACCTCAATGGCATTGCCAGTATTCTGTTGTACCACCCATATCACTTAG

Protein sequence

MSARLLKKVLKEQEELRQHYSQSSTTEDGQDSGSGPSSPTASSINPFDLLIDEEDDSQIDPHQDNDREAVEEISVDSRKQFVRNGAKSAISTSNKKLKKKKKKKERESFSSTTDRILDKPLDVLLKSLSLDIDPSAISSPQGPEKAKNGAEESGKQCMPSLLEVEPKYLNAGNELRRIFGAKVVKSFEKNNQASSSRQLRGGRRVNHLSRKTYLVSPSDHWPRWDGSLSMEYLESRNGYHYFRYVHLPSYVKLRKHLKPPDLFMTSMALPVFCCTTHIT*

Homology

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BLAST of MELO3C005936 vs. Swiss-Prot
Match: TCF25_MOUSE (Transcription factor 25 OS=Mus musculus GN=Tcf25 PE=1 SV=2)

HSP 1 Score: 60.8 bits (146), Expect = 2.7e-08
Identity = 47/167 (28.14%), Postives = 72/167 (43.11%), Query Frame = 1


Query: 85  GAKSAISTSNKKLKKKKKKKERESFSSTTDRILDKPLDVLLKSLSLDIDPSAISSPQGPE 144
           G+    + S K  KKKKK+K ++S +  +     + +D +L+ +    D S  S P  P 
Sbjct: 114 GSSEQSNASGKLRKKKKKQKNKKSCTGESSENGLEDIDRILERIE---DSSGFSHPGPPP 173

Query: 145 KAKNGAEESGKQCMPSLLEVEPKYLNAGNELRRIFGAKVVKSFEKNNQASSSRQLRGGRR 204
            +              +L VE ++LN   EL+R FGA+ V   ++  Q           R
Sbjct: 174 LSSR----------KHVLYVEHRHLNPDTELKRYFGARAVLGEQRPRQ-----------R 233

Query: 205 VNHLSRKTYLVSPSDHWPRWDG-SLSMEYLESRNGYHYFRYVHLPSY 251
                + T+L +P   WPR+    LSM  LES+ G  +F + H   Y
Sbjct: 234 QRVYPKCTWLTTPKSTWPRYSKPGLSMRLLESKKGLSFFAFDHNEEY 256

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BLAST of MELO3C005936 vs. Swiss-Prot
Match: RCQ1_SCHPO (Ribosome quality control complex subunit 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rqc1 PE=1 SV=2)

HSP 1 Score: 58.5 bits (140), Expect = 1.3e-07
Identity = 69/247 (27.94%), Postives = 106/247 (42.91%), Query Frame = 1


Query: 1   MSARLLKKVLKE-QEELRQHYSQSSTTEDGQDSGSGPSSPTASSINPFDLLIDEEDDSQI 60
           MS+R L+K+ ++ Q EL +    S + ED + S    S+     +N F++L  E++++ I
Sbjct: 1   MSSRALRKLQRQRQTELLEEALDSESDEDDEFS----STSGKKVVNVFEIL--EKENNAI 60

Query: 61  DPHQDNDREAVEEISVDSRKQFVRNGAKSAISTSNKKLKKKKKKKERESFSSTTDRILD- 120
           +       EA + +S + + + +  G    +ST+ K   KKKKKK+++    T  R LD 
Sbjct: 61  NS------EAEKSVSEEEQDEPLVEGESPIVSTNKKAKNKKKKKKQQKKKKVTGKRDLDN 120

Query: 121 -----KPLDVLLKSLSLDIDPSAISSPQGPEKAK----------NGAEESG--------K 180
                + L+ L  S ++D D   I       K K           G EES          
Sbjct: 121 QSSDNEKLEGLESSKNIDDDIDEIEKAAAELKLKYREQDQVEHVAGVEESATIPLDKELD 180

Query: 181 QCMPSLLEVEPKYLNAGNELRRIFGAKVVKSFEKNNQASSSRQLRGGRRVNHLSRKTYLV 223
           + +  LL V    LN   E+R+IFG  V    EK +  +    LR  R V        LV
Sbjct: 181 EKLNKLLGVNISMLNPDLEIRKIFGRIV----EKRSVNARHDNLRRKRHV--------LV 223

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BLAST of MELO3C005936 vs. Swiss-Prot
Match: TCF25_HUMAN (Transcription factor 25 OS=Homo sapiens GN=TCF25 PE=1 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 2.9e-07
Identity = 45/161 (27.95%), Postives = 73/161 (45.34%), Query Frame = 1


Query: 91  STSNKKLKKKKKKKERESFSSTTDRILDKPLDVLLKSLSLDIDPSAISSPQGPEKAKNGA 150
           S ++ KL+KKKKK++ +   S+T    +  L+ + + L    D + ++ P GP    +  
Sbjct: 119 SHASGKLRKKKKKQKNKK--SSTGEASENGLEDIDRILERIEDSTGLNRP-GPAPLSSRK 178

Query: 151 EESGKQCMPSLLEVEPKYLNAGNELRRIFGAKVVKSFEKNNQASSSRQLRGGRRVNHLSR 210
                     +L VE ++LN   EL+R FGA+ +   ++  Q           R     +
Sbjct: 179 H---------VLYVEHRHLNPDTELKRYFGARAILGEQRPRQ-----------RQRVYPK 238

Query: 211 KTYLVSPSDHWPRWDG-SLSMEYLESRNGYHYFRYVHLPSY 251
            T+L +P   WPR+    LSM  LES+ G  +F + H   Y
Sbjct: 239 CTWLTTPKSTWPRYSKPGLSMRLLESKKGLSFFAFEHSEEY 256

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BLAST of MELO3C005936 vs. TrEMBL
Match: A0A0A0L889_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G116680 PE=4 SV=1)

HSP 1 Score: 472.6 bits (1215), Expect = 3.3e-130
Identity = 235/255 (92.16%), Postives = 245/255 (96.08%), Query Frame = 1


Query: 1   MSARLLKKVLKEQEELRQHYSQSSTTEDGQDSGSGPSSPTASSINPFDLLIDEEDDSQID 60
           MSARLLKKVLKEQEELRQHYSQSST EDG DSGSGPSSPTASSINPFDLLID+EDDSQID
Sbjct: 1   MSARLLKKVLKEQEELRQHYSQSSTAEDGHDSGSGPSSPTASSINPFDLLIDDEDDSQID 60

Query: 61  PHQDNDREAVEEISVDSRKQFVRNGAKSAISTSNKKLKKKKKKKERESFSSTTDRILDKP 120
           PHQDND+EAVEE+SVD  KQFV NGAKSAISTSNKKLKKKKKKKERES SSTTD+ILDKP
Sbjct: 61  PHQDNDQEAVEEVSVDRHKQFVCNGAKSAISTSNKKLKKKKKKKERESSSSTTDKILDKP 120

Query: 121 LDVLLKSLSLDIDPSAISSPQGPEKAKNGAEESGKQCMPSLLEVEPKYLNAGNELRRIFG 180
           LDV+LKSLSLDI+PSA+ SPQGP+KAKNG EES KQCMPSLLEVEPKYLNAGNELRRIFG
Sbjct: 121 LDVILKSLSLDINPSALRSPQGPDKAKNGTEESVKQCMPSLLEVEPKYLNAGNELRRIFG 180

Query: 181 AKVVKSFEKNNQASSSRQLRGGRRVNHLSRKTYLVSPSDHWPRWDGSLSMEYLESRNGYH 240
           AKVVKSFEKNNQASSSRQLRGGRRVNHLSRKTYLVSPSDHWPRWDGSLSMEYLESRNGYH
Sbjct: 181 AKVVKSFEKNNQASSSRQLRGGRRVNHLSRKTYLVSPSDHWPRWDGSLSMEYLESRNGYH 240

Query: 241 YFRYVHLPSYVKLRK 256
           YFRYVHLPSYV+ +K
Sbjct: 241 YFRYVHLPSYVEAQK 255

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BLAST of MELO3C005936 vs. TrEMBL
Match: A0A0D2SZU9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G133000 PE=4 SV=1)

HSP 1 Score: 241.5 bits (615), Expect = 1.2e-60
Identity = 140/254 (55.12%), Postives = 174/254 (68.50%), Query Frame = 1


Query: 1   MSARLLKKVLKEQEELRQHYSQSSTTED--GQDSGSGPSSPTASSINPFDLLIDEEDDSQ 60
           MSARLLKKVLKEQE+ +QH  +    ++    D    P S   SS NPFDLL +E DD+ 
Sbjct: 1   MSARLLKKVLKEQEQKKQHVIEEDEQDELLNDDESVSPDSGAGSSKNPFDLL-NEGDDAD 60

Query: 61  IDPHQDNDREAVEEISVDSRKQ--FVRNGAKSAISTSNKKLKKKKKKKERESFSSTTDRI 120
            D   + D+   +E S   ++Q   V+N   SA STSN K KKKK+KK +E + ST  R 
Sbjct: 61  ED---NADQVYADETSTQKQEQPRSVKNALNSA-STSNNKSKKKKQKKGKEGYLSTGKR- 120

Query: 121 LDKPLDVLLKSLSLDIDPSAISSPQGPEKAKNGAEESGKQCMPSLLEVEPKYLNAGNELR 180
            + PLDV L++L+LDI+    SS Q     K    E+ KQ  PS+L V+PKYLN  NELR
Sbjct: 121 -ETPLDVNLEALALDIE----SSSQQSGLNKQPGFENFKQSKPSVLHVDPKYLNVENELR 180

Query: 181 RIFGAKVVKSFEKNNQASSSRQLRGGRRVNHLSRKTYLVSPSDHWPRWDGSLSMEYLESR 240
           RIFG+KVVKSFEK+NQ+SSSRQ+RGGRR NH  RKT L+SPSDHWPRWDGSLSME+LE++
Sbjct: 181 RIFGSKVVKSFEKSNQSSSSRQVRGGRRGNHHIRKTVLISPSDHWPRWDGSLSMEFLETK 240

Query: 241 NGYHYFRYVHLPSY 251
           +GYHYFR+ H  SY
Sbjct: 241 DGYHYFRFTHSSSY 243

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BLAST of MELO3C005936 vs. TrEMBL
Match: B9RMZ3_RICCO (Expressed protein, putative OS=Ricinus communis GN=RCOM_1341640 PE=4 SV=1)

HSP 1 Score: 240.0 bits (611), Expect = 3.6e-60
Identity = 132/255 (51.76%), Postives = 172/255 (67.45%), Query Frame = 1


Query: 1   MSARLLKKVLKEQEELRQHYSQSSTTEDGQDSGSGPSSPTASSINPFDLLIDEEDDSQID 60
           MSARLLKKVLKEQE+ + H        + ++    P   T   INPFDLL D+      D
Sbjct: 1   MSARLLKKVLKEQEQQQLH------NHEEEEEAESPDLSTRPVINPFDLLNDD------D 60

Query: 61  PHQDNDREAVEE---ISVDSRKQFVRNGAKSAISTSNKKLKKKKKKKERESFSSTTDRIL 120
           P Q+N+ E  +E   +++D ++  V     S +S SN+K KKKKKKK + +  S T++  
Sbjct: 61  PDQENESEITDETLSVNIDKQEISVSRSGASGVSASNRKSKKKKKKKGKAALPSNTNKG- 120

Query: 121 DKPLDVLLKSLSLDIDPSAISSPQGPEKAKNGA--EESGKQCMPSLLEVEPKYLNAGNEL 180
           +  LD  L++LSLD++ S         K +N    EE  KQC PS+L+V+PK LN  NEL
Sbjct: 121 ETQLDEALETLSLDVNSSRNQLDPIKTKVENPRLREEFDKQCAPSILQVDPKCLNPDNEL 180

Query: 181 RRIFGAKVVKSFEKNNQASSSRQLRGGRRVNHLSRKTYLVSPSDHWPRWDGSLSMEYLES 240
           RRIFG+KVVKSFEK+NQASSSRQ+RG RR +H +RKT LVSPS+HWPRWDGSLSME+LE+
Sbjct: 181 RRIFGSKVVKSFEKSNQASSSRQVRGARRGSHHTRKTILVSPSEHWPRWDGSLSMEFLET 240

Query: 241 RNGYHYFRYVHLPSY 251
           ++GYH+FRYVH PSY
Sbjct: 241 KDGYHHFRYVHSPSY 242

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BLAST of MELO3C005936 vs. TrEMBL
Match: B9I979_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s10510g PE=4 SV=2)

HSP 1 Score: 235.7 bits (600), Expect = 6.7e-59
Identity = 136/255 (53.33%), Postives = 177/255 (69.41%), Query Frame = 1


Query: 1   MSARLLKKVLKEQEELRQHYSQSSTTEDGQDSGSGPSSPTASSINPFDLLIDEEDDSQID 60
           MS RLLK+VLKEQE  +Q +   S  E+G+     P S T  +INPFDLL D++    +D
Sbjct: 78  MSVRLLKRVLKEQELQQQQHHDESEEEEGES----PYSGTRPAINPFDLLNDDD----VD 137

Query: 61  PHQDNDREAVEEISVDSRKQFVRNGAKS---AISTSNKKLKKKKKKKERESFSSTTDRIL 120
             Q+N+ E  +E+ V +  +   +G KS   AISTSN+K KKKKKKK +   SS T+++ 
Sbjct: 138 QLQENEPEIDDEMVVGNNHKQELSGMKSMAGAISTSNQKSKKKKKKKSKTGLSSVTNKVK 197

Query: 121 DKPLDVLLKSLSLDIDPSA---ISSPQGPEKAKNGAEESGKQCMPSLLEVEPKYLNAGNE 180
           + P D +L +LSLD++ S      +   PE +K  AE   KQC PS L+V+PK LN  NE
Sbjct: 198 E-PFDDMLDTLSLDVNSSRHQPCPTKTKPETSKLCAEFV-KQCAPSALQVDPKCLNPENE 257

Query: 181 LRRIFGAKVVKSFEKNNQASSSRQLRGGRRVNHLSRKTYLVSPSDHWPRWDGSLSMEYLE 240
           LRRIFG+KVVKSFEK+NQASSSRQ+ GGRR  H +R+T LVSPS+HWPRWDGSLSME+LE
Sbjct: 258 LRRIFGSKVVKSFEKSNQASSSRQVIGGRRGAHHTRRTILVSPSEHWPRWDGSLSMEFLE 317

Query: 241 SRNGYHYFRYVHLPS 250
           +++GYH+FRYVH  S
Sbjct: 318 TKDGYHHFRYVHSSS 322

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BLAST of MELO3C005936 vs. TrEMBL
Match: A0A061DS07_THECC (Nulp1-type, putative OS=Theobroma cacao GN=TCM_004994 PE=4 SV=1)

HSP 1 Score: 235.7 bits (600), Expect = 6.7e-59
Identity = 130/253 (51.38%), Postives = 169/253 (66.80%), Query Frame = 1


Query: 1   MSARLLKKVLKEQEELRQHYSQSSTTEDGQDSGSGPSSPTASSINPFDLLIDEEDDSQID 60
           MSARLL KVLKE+E+ +QH  +     +G +S S P S   SS+NPFDLL + +D+ + +
Sbjct: 1   MSARLLNKVLKEREQQKQHVIEEEEQLNGGESES-PDSGARSSVNPFDLLNEGDDEDEGN 60

Query: 61  PHQDNDREAVEEISVDSRKQFVRNGAKSAISTSNKKLKKKKKKKERESFSSTTDRILDKP 120
           P Q +  E  +E      +     G  + +S SN K KKKKKKK +E  SS      + P
Sbjct: 61  PDQMDAPEVADETLTRKEEPPSLRGTTNVVSRSNNKSKKKKKKKSKEGSSSMDKH--ETP 120

Query: 121 LDVLLKSLSLDIDPSAISSPQGPEKAKNGAEESG---KQCMPSLLEVEPKYLNAGNELRR 180
           LDV L +LSLD   S   S      ++N A++ G   KQ   S+L+V+PKYLN  NELRR
Sbjct: 121 LDVTLDALSLDGSSSGHQSGSNKPISEN-AKDCGDLVKQYTTSILQVDPKYLNVENELRR 180

Query: 181 IFGAKVVKSFEKNNQASSSRQLRGGRRVNHLSRKTYLVSPSDHWPRWDGSLSMEYLESRN 240
           IFG+KVVKSFEK+NQ+S+SRQ+RGGRR +H  RKT ++SPSDHWPRWDGSLSME+LE+++
Sbjct: 181 IFGSKVVKSFEKSNQSSTSRQVRGGRRGSHHIRKTVMISPSDHWPRWDGSLSMEFLETKD 240

Query: 241 GYHYFRYVHLPSY 251
           GYHYFRY H  SY
Sbjct: 241 GYHYFRYAHSSSY 249

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BLAST of MELO3C005936 vs. TAIR10
Match: AT2G46900.1 (AT2G46900.1 Basic helix-loop-helix, Nulp1-type (InterPro:IPR006994))

HSP 1 Score: 158.7 bits (400), Expect = 5.3e-39
Identity = 106/259 (40.93%), Postives = 148/259 (57.14%), Query Frame = 1


Query: 1   MSARLLKKVLKEQEELR-QHYSQSSTTEDGQDSGSGPSSPTASSINPFDLLIDEEDDSQI 60
           MS RLLKKVL+E E+ + Q + +    ED ++SG+       SSINPFDLL D ++D   
Sbjct: 1   MSGRLLKKVLQEHEDSKLQKHHEEEEEEDEEESGA------RSSINPFDLLNDGDED--- 60

Query: 61  DPHQDNDREAVEEISVDSRKQFVRNGAKSAISTSNKKLKKKKKKKERESFSSTTDRILDK 120
            P + +D    E+ + D+  Q   + A      S  K KKKKKKK +ES S+      + 
Sbjct: 61  -PEEIDDETIAEKKNEDADHQ--SSVADHVQPVSKNKSKKKKKKKNKESGSNVPKA--EM 120

Query: 121 PLDVLLKSLSLDIDPSAISSPQGPEKAKNGAEESGKQCMPSLLEVEPKYLNAGNELRRIF 180
            LD  L++L L+    A S     ++ K  A+ S K     +LE++ KYLN  NELRR +
Sbjct: 121 TLDETLEALGLN----ANSKQDKVQETKPNADSSKKASSRFVLEIDSKYLNLENELRRTY 180

Query: 181 GAKVVKSFEKNNQA---SSSRQLRGGRRVNHLSRKTYLVSPSDHWPRWDGSLSMEYLESR 240
           G+K ++SFE  + +   SSSR  RGGRR  H   KT LVSP ++W RWD S SME+LE++
Sbjct: 181 GSKAMRSFESESGSQGGSSSR--RGGRRGVHHITKTVLVSPKENWSRWDRSFSMEFLETK 239

Query: 241 NGYHYFRYVHLPSYVKLRK 256
           +G +YFRY H  SY + ++
Sbjct: 241 DGNNYFRYTHSSSYEQAQR 239

[Close]

BLAST of MELO3C005936 vs. NCBI nr
Match: gi|659074717|ref|XP_008437758.1| (PREDICTED: LOW QUALITY PROTEIN: transcription factor 25 [Cucumis melo])

HSP 1 Score: 493.8 bits (1270), Expect = 2.0e-136
Identity = 251/261 (96.17%), Postives = 253/261 (96.93%), Query Frame = 1


Query: 1   MSARLLKKVLKEQEELRQHYSQSSTTEDGQDSGSGPSSPTASSINPFDLLIDEEDDSQID 60
           MSARLLKKVLKEQEELRQHYSQSSTTEDGQDSGSGPSSPTASSINPFDLLIDEEDDSQID
Sbjct: 1   MSARLLKKVLKEQEELRQHYSQSSTTEDGQDSGSGPSSPTASSINPFDLLIDEEDDSQID 60

Query: 61  PHQ------DNDREAVEEISVDSRKQFVRNGAKSAISTSNKKLKKKKKKKERESFSSTTD 120
           PHQ      DNDREAVEEISVDSRKQFVRNGAKSAISTSNKKLKKKKKKKERESFSSTTD
Sbjct: 61  PHQAVICQQDNDREAVEEISVDSRKQFVRNGAKSAISTSNKKLKKKKKKKERESFSSTTD 120

Query: 121 RILDKPLDVLLKSLSLDIDPSAISSPQGPEKAKNGAEESGKQCMPSLLEVEPKYLNAGNE 180
           RILDKPLDVLLKSLSLDIDPSAISSPQGPEKAKNGAEESGKQCMPSLLEVEPKYLNAGNE
Sbjct: 121 RILDKPLDVLLKSLSLDIDPSAISSPQGPEKAKNGAEESGKQCMPSLLEVEPKYLNAGNE 180

Query: 181 LRRIFGAKVVKSFEKNNQASSSRQLRGGRRVNHLSRKTYLVSPSDHWPRWDGSLSMEYLE 240
           LRRIFGAKVVKSFEKNNQASSSRQLRGGRRVNHLSRKTYLVSPSDHWPRWDGSLSMEYLE
Sbjct: 181 LRRIFGAKVVKSFEKNNQASSSRQLRGGRRVNHLSRKTYLVSPSDHWPRWDGSLSMEYLE 240

Query: 241 SRNGYHYFRYVHLPSYVKLRK 256
           SRNGYHYFRYVHLPSY + +K
Sbjct: 241 SRNGYHYFRYVHLPSYXEAQK 261

[Close]

BLAST of MELO3C005936 vs. NCBI nr
Match: gi|449431938|ref|XP_004133757.1| (PREDICTED: transcription factor 25 [Cucumis sativus])

HSP 1 Score: 472.6 bits (1215), Expect = 4.7e-130
Identity = 235/255 (92.16%), Postives = 245/255 (96.08%), Query Frame = 1


Query: 1   MSARLLKKVLKEQEELRQHYSQSSTTEDGQDSGSGPSSPTASSINPFDLLIDEEDDSQID 60
           MSARLLKKVLKEQEELRQHYSQSST EDG DSGSGPSSPTASSINPFDLLID+EDDSQID
Sbjct: 1   MSARLLKKVLKEQEELRQHYSQSSTAEDGHDSGSGPSSPTASSINPFDLLIDDEDDSQID 60

Query: 61  PHQDNDREAVEEISVDSRKQFVRNGAKSAISTSNKKLKKKKKKKERESFSSTTDRILDKP 120
           PHQDND+EAVEE+SVD  KQFV NGAKSAISTSNKKLKKKKKKKERES SSTTD+ILDKP
Sbjct: 61  PHQDNDQEAVEEVSVDRHKQFVCNGAKSAISTSNKKLKKKKKKKERESSSSTTDKILDKP 120

Query: 121 LDVLLKSLSLDIDPSAISSPQGPEKAKNGAEESGKQCMPSLLEVEPKYLNAGNELRRIFG 180
           LDV+LKSLSLDI+PSA+ SPQGP+KAKNG EES KQCMPSLLEVEPKYLNAGNELRRIFG
Sbjct: 121 LDVILKSLSLDINPSALRSPQGPDKAKNGTEESVKQCMPSLLEVEPKYLNAGNELRRIFG 180

Query: 181 AKVVKSFEKNNQASSSRQLRGGRRVNHLSRKTYLVSPSDHWPRWDGSLSMEYLESRNGYH 240
           AKVVKSFEKNNQASSSRQLRGGRRVNHLSRKTYLVSPSDHWPRWDGSLSMEYLESRNGYH
Sbjct: 181 AKVVKSFEKNNQASSSRQLRGGRRVNHLSRKTYLVSPSDHWPRWDGSLSMEYLESRNGYH 240

Query: 241 YFRYVHLPSYVKLRK 256
           YFRYVHLPSYV+ +K
Sbjct: 241 YFRYVHLPSYVEAQK 255

[Close]

BLAST of MELO3C005936 vs. NCBI nr
Match: gi|700201198|gb|KGN56331.1| (hypothetical protein Csa_3G116680 [Cucumis sativus])

HSP 1 Score: 472.6 bits (1215), Expect = 4.7e-130
Identity = 235/255 (92.16%), Postives = 245/255 (96.08%), Query Frame = 1


Query: 1   MSARLLKKVLKEQEELRQHYSQSSTTEDGQDSGSGPSSPTASSINPFDLLIDEEDDSQID 60
           MSARLLKKVLKEQEELRQHYSQSST EDG DSGSGPSSPTASSINPFDLLID+EDDSQID
Sbjct: 1   MSARLLKKVLKEQEELRQHYSQSSTAEDGHDSGSGPSSPTASSINPFDLLIDDEDDSQID 60

Query: 61  PHQDNDREAVEEISVDSRKQFVRNGAKSAISTSNKKLKKKKKKKERESFSSTTDRILDKP 120
           PHQDND+EAVEE+SVD  KQFV NGAKSAISTSNKKLKKKKKKKERES SSTTD+ILDKP
Sbjct: 61  PHQDNDQEAVEEVSVDRHKQFVCNGAKSAISTSNKKLKKKKKKKERESSSSTTDKILDKP 120

Query: 121 LDVLLKSLSLDIDPSAISSPQGPEKAKNGAEESGKQCMPSLLEVEPKYLNAGNELRRIFG 180
           LDV+LKSLSLDI+PSA+ SPQGP+KAKNG EES KQCMPSLLEVEPKYLNAGNELRRIFG
Sbjct: 121 LDVILKSLSLDINPSALRSPQGPDKAKNGTEESVKQCMPSLLEVEPKYLNAGNELRRIFG 180

Query: 181 AKVVKSFEKNNQASSSRQLRGGRRVNHLSRKTYLVSPSDHWPRWDGSLSMEYLESRNGYH 240
           AKVVKSFEKNNQASSSRQLRGGRRVNHLSRKTYLVSPSDHWPRWDGSLSMEYLESRNGYH
Sbjct: 181 AKVVKSFEKNNQASSSRQLRGGRRVNHLSRKTYLVSPSDHWPRWDGSLSMEYLESRNGYH 240

Query: 241 YFRYVHLPSYVKLRK 256
           YFRYVHLPSYV+ +K
Sbjct: 241 YFRYVHLPSYVEAQK 255

[Close]

BLAST of MELO3C005936 vs. NCBI nr
Match: gi|823209172|ref|XP_012437866.1| (PREDICTED: transcription factor 25 [Gossypium raimondii])

HSP 1 Score: 241.5 bits (615), Expect = 1.8e-60
Identity = 140/254 (55.12%), Postives = 174/254 (68.50%), Query Frame = 1


Query: 1   MSARLLKKVLKEQEELRQHYSQSSTTED--GQDSGSGPSSPTASSINPFDLLIDEEDDSQ 60
           MSARLLKKVLKEQE+ +QH  +    ++    D    P S   SS NPFDLL +E DD+ 
Sbjct: 1   MSARLLKKVLKEQEQKKQHVIEEDEQDELLNDDESVSPDSGAGSSKNPFDLL-NEGDDAD 60

Query: 61  IDPHQDNDREAVEEISVDSRKQ--FVRNGAKSAISTSNKKLKKKKKKKERESFSSTTDRI 120
            D   + D+   +E S   ++Q   V+N   SA STSN K KKKK+KK +E + ST  R 
Sbjct: 61  ED---NADQVYADETSTQKQEQPRSVKNALNSA-STSNNKSKKKKQKKGKEGYLSTGKR- 120

Query: 121 LDKPLDVLLKSLSLDIDPSAISSPQGPEKAKNGAEESGKQCMPSLLEVEPKYLNAGNELR 180
            + PLDV L++L+LDI+    SS Q     K    E+ KQ  PS+L V+PKYLN  NELR
Sbjct: 121 -ETPLDVNLEALALDIE----SSSQQSGLNKQPGFENFKQSKPSVLHVDPKYLNVENELR 180

Query: 181 RIFGAKVVKSFEKNNQASSSRQLRGGRRVNHLSRKTYLVSPSDHWPRWDGSLSMEYLESR 240
           RIFG+KVVKSFEK+NQ+SSSRQ+RGGRR NH  RKT L+SPSDHWPRWDGSLSME+LE++
Sbjct: 181 RIFGSKVVKSFEKSNQSSSSRQVRGGRRGNHHIRKTVLISPSDHWPRWDGSLSMEFLETK 240

Query: 241 NGYHYFRYVHLPSY 251
           +GYHYFR+ H  SY
Sbjct: 241 DGYHYFRFTHSSSY 243

[Close]

BLAST of MELO3C005936 vs. NCBI nr
Match: gi|255548151|ref|XP_002515132.1| (PREDICTED: transcription factor 25 [Ricinus communis])

HSP 1 Score: 240.0 bits (611), Expect = 5.1e-60
Identity = 132/255 (51.76%), Postives = 172/255 (67.45%), Query Frame = 1


Query: 1   MSARLLKKVLKEQEELRQHYSQSSTTEDGQDSGSGPSSPTASSINPFDLLIDEEDDSQID 60
           MSARLLKKVLKEQE+ + H        + ++    P   T   INPFDLL D+      D
Sbjct: 1   MSARLLKKVLKEQEQQQLH------NHEEEEEAESPDLSTRPVINPFDLLNDD------D 60

Query: 61  PHQDNDREAVEE---ISVDSRKQFVRNGAKSAISTSNKKLKKKKKKKERESFSSTTDRIL 120
           P Q+N+ E  +E   +++D ++  V     S +S SN+K KKKKKKK + +  S T++  
Sbjct: 61  PDQENESEITDETLSVNIDKQEISVSRSGASGVSASNRKSKKKKKKKGKAALPSNTNKG- 120

Query: 121 DKPLDVLLKSLSLDIDPSAISSPQGPEKAKNGA--EESGKQCMPSLLEVEPKYLNAGNEL 180
           +  LD  L++LSLD++ S         K +N    EE  KQC PS+L+V+PK LN  NEL
Sbjct: 121 ETQLDEALETLSLDVNSSRNQLDPIKTKVENPRLREEFDKQCAPSILQVDPKCLNPDNEL 180

Query: 181 RRIFGAKVVKSFEKNNQASSSRQLRGGRRVNHLSRKTYLVSPSDHWPRWDGSLSMEYLES 240
           RRIFG+KVVKSFEK+NQASSSRQ+RG RR +H +RKT LVSPS+HWPRWDGSLSME+LE+
Sbjct: 181 RRIFGSKVVKSFEKSNQASSSRQVRGARRGSHHTRKTILVSPSEHWPRWDGSLSMEFLET 240

Query: 241 RNGYHYFRYVHLPSY 251
           ++GYH+FRYVH PSY
Sbjct: 241 KDGYHHFRYVHSPSY 242

The following BLAST results are available for this feature:

BLAST of MELO3C005936 vs. Swiss-Prot


Match Name	E-value	Identity	Description
TCF25_MOUSE	2.7e-08	28.14	Transcription factor 25 OS=Mus musculus GN=Tcf25 PE=1 SV=2	[more]
RCQ1_SCHPO	1.3e-07	27.94	Ribosome quality control complex subunit 1 OS=Schizosaccharomyces pombe (strain ...	[more]
TCF25_HUMAN	2.9e-07	27.95	Transcription factor 25 OS=Homo sapiens GN=TCF25 PE=1 SV=1	[more]

BLAST of MELO3C005936 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L889_CUCSA	3.3e-130	92.16	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G116680 PE=4 SV=1	[more]
A0A0D2SZU9_GOSRA	1.2e-60	55.12	Uncharacterized protein OS=Gossypium raimondii GN=B456_008G133000 PE=4 SV=1	[more]
B9RMZ3_RICCO	3.6e-60	51.76	Expressed protein, putative OS=Ricinus communis GN=RCOM_1341640 PE=4 SV=1	[more]
B9I979_POPTR	6.7e-59	53.33	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s10510g PE=4 SV=2	[more]
A0A061DS07_THECC	6.7e-59	51.38	Nulp1-type, putative OS=Theobroma cacao GN=TCM_004994 PE=4 SV=1	[more]

BLAST of MELO3C005936 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G46900.1	5.3e-39	40.93	Basic helix-loop-helix, Nulp1-type (InterPro:IPR006994)	[more]

BLAST of MELO3C005936 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659074717\|ref\|XP_008437758.1\|	2.0e-136	96.17	PREDICTED: LOW QUALITY PROTEIN: transcription factor 25 [Cucumis melo]	[more]
gi\|449431938\|ref\|XP_004133757.1\|	4.7e-130	92.16	PREDICTED: transcription factor 25 [Cucumis sativus]	[more]
gi\|700201198\|gb\|KGN56331.1\|	4.7e-130	92.16	hypothetical protein Csa_3G116680 [Cucumis sativus]	[more]
gi\|823209172\|ref\|XP_012437866.1\|	1.8e-60	55.12	PREDICTED: transcription factor 25 [Gossypium raimondii]	[more]
gi\|255548151\|ref\|XP_002515132.1\|	5.1e-60	51.76	PREDICTED: transcription factor 25 [Ricinus communis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR006994	TCF25

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
MU56840	melon EST collection version 4.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C005936T1	MELO3C005936T1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
MU56840	MU56840	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006994	Transcription factor 25	PANTHER	PTHR22684	NULP1-RELATED	coord: 2..253 score: 3.5
None	No IPR available	unknown	Coil	Coil	coord: 87..107 scor

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C005936	Silver-seed gourd	carmeB0985
MELO3C005936	Cucumber (Chinese Long) v3	cucmeB236
MELO3C005936	Watermelon (97103) v2	mewmbB434
MELO3C005936	Wax gourd	mewgoB540
MELO3C005936	Cucumber (Gy14) v1	cgymeB439
MELO3C005936	Cucurbita maxima (Rimu)	cmameB766
MELO3C005936	Cucurbita moschata (Rifu)	cmomeB755
MELO3C005936	Wild cucumber (PI 183967)	cpimeB230
MELO3C005936	Cucumber (Chinese Long) v2	cumeB236
MELO3C005936	Watermelon (Charleston Gray)	mewcgB427
MELO3C005936	Watermelon (97103) v1	mewmB461
MELO3C005936	Cucurbita pepo (Zucchini)	cpemeB815
MELO3C005936	Bottle gourd (USVL1VR-Ls)	lsimeB378
MELO3C005936	Cucumber (Gy14) v2	cgybmeB200