MELO3C005936T1 (mRNA) Melon (DHL92) v3.5.1
The following sequences are available for this feature:
Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGTCCGCTCGGCTGCTCAAAAAGGTTTTAAAGGAACAGGAGGAGCTTCGACAGCACTATTCTCAATCCTCCACCACTGAAGACGGACAGGATTCTGGTTCTGGGCCATCGTCACCTACTGCTTCTTCTATCAATCCCTTCGACCTCCTTATCGATGAAGAAGATGACTCCCAAATTGACCCTCACCAGGTTTCTTATTTCATTCCCCTCTTCAACTTTGCTGAATTCTCAACTTTTCACATGCCTGCACTCTAATTATTTGGGAGACTGGAGCCTTCTCAATTTCTATAAATTTTAAGCATATTTACACAACTGTGAAAGTTGATACTTCAATGGTTCCTTCCGCAACTATGTGCACCCGATTATAAACGCACGAATTGTTGTTTGATTTTGCAGTATACTAATTATATATTTGGTTTTCCATATATATTCCGAAGCTTATGTCTTTCCGGAAGTAGGCTGTCGAAATGTTTCTTTTTTTCGAATTAAAACACATTTGTAATTTAGACAGCTGTAAACTTATTCCGACAGTAAACATTAGAATTTAGAAATATGACGAACAGTTTTTAAAAACCTATTGATCTTTTTTGTTTTTTTAGAAGCACCCATTCATTGAAAATGATGAGTTGGCTTGCGTTCATCTTTTGTGTTGAATATACCGAATGATGAAGAATTAAAAACCCGGAATTTGAAAGGCATTCTTCTAAACAAACTTTTAAACAACTTATCTTCTTTTTTCTTGGGTCAAACTATATTTTATACTGTTTTTTGTCCACCAGTTTCACCTTTGGCCAATTTATGCCACAATTCTTAACCATTTTTTAAGCCAGAGGTGGTTGACTTGAGCTTAATATTAGTACATAACTACTAGTTCTACTTTGTGTGTGTGCGTGCACACAACATGCGGGGGGACGGAGAACTTACAAAGACAAAAAACGCAACTTTTTGTTATTGAAATAAAGGACAATTGCATTGCATCACAAATTTAAGTCAAGAACAAGGAAAGCATTGAACTGCACAAAATTTGGGACCCTTCTAATAGGTACATGAGTTGATTTATTATTTTTCCTTCAACTTTTGTCATCATTTCTTGCTAGACAATGGACTCGTTTTGAATTTGGGGTATGAATTTAAGTTAATTTATTATTATTCTTCAACCTTTTGTCATCAAAAGCTTCTCGAACGAAGTCTCCTTTGAAGCCTGTCAGTGCGTGTTGTAGTTTTGGGCATTGTTTCCTCTTTCTTCACTTTCAATGGGTTTTTGGTTTCTCGTTGAAGGTTAACTGTTCCCATTTGGTTGGGCTCTTCAGAAGTTTTTCTCTCAATTGTTTTGTGTTTGTTTACATTGAGGAGTTTTGCTTTGCATTTCTGAAACAAATTTCTTGATTTGTCCTCATAAAATTTTTCATTCTCAATAATACGAAATAAATAAAATAATGATACCATTGTAACATAATAATCTCCCTTAGTTTAGCCGTTCCCTTGTTTTCTTTGTTTTCAACTTTTTTGCCCAACAGGCTGTCATTTGTCAACAGGACAATGACCGGGAGGCGGTTGAGGAAATCTCCGTGGACAGTCGCAAGCAGTTTGTGCGCAATGGAGCTAAAAGTGCTATTTCAACATCAAATAAAAAATTGAAAAAAAAGAAAAAGAAGAAGGAGCGTGAGAGTTTTTCTTCCACAACAGATAGAATCCTTGACAAACCCTTGGATGTGCTTCTCAAATCTCTGTCTCTGGATATTGATCCCTCTGCTATAAGCAGTCCACAGGGCCCTGAGAAAGCCAAAAATGGTGCAGAAGAAAGTGGAAAACAATGTATGCCGTCACTATTAGAAGTGGAGCCTAAATATTTAAATGCCGGAAATGAACTGCGAAGAATATTTGGTGCTAAGGTAGTAAAATCATTTGAAAAAAATAACCAGGCCAGTAGTTCTAGACAACTACGTGGGGGAAGACGTGTCAACCATCTTTCTAGGAAGACCTATCTTGTAAGTCCATCAGATCATTGGCCTCGTTGGGATGGTTCTCTTTCCATGGAGTATTTGGAGTCGAGGAATGGATATCACTACTTCAGGTAAATTTCATTTTCATTTATAGTTTCTTTTTTACCCCTTGCTCCCTAAAGCATTTACTGAATTTAAGTAGAATTAAACTAGCATCGGATTACTGTATATGTGTGTCCAGCCTGCTAGGTTTTGACGAATGATTTGTCCAGCAAGGCTACTACATGTATTACCTGAATATTAAATTGAACTTCTAAGTAACTGTATAAAGCTCGTCTTTCTTGGTTGAAGATTTAATAAGTTGAATGAACTGCAATTTTATGAATCTATTATCGTCTTTTTTTGTCAATTTTCATTTATAATATGCAAGGACTCCCTTTGTGGAGACACACAAACTTTACTAATAATGATAATCAAAATACAAGATAATCTCCTTTTGAGAGGGAGGAACTCTCCAGGATACAACTTAATACATAATACTAGCATAACCCCAAAACAGGATCACGAAACTATATATAACAGCCAAGCAACCTGACCTACTAACTTAACCTTGGTTAGGTGAATTCTCCATTCTACCCCTCCTAGCATACGTGTACACAATTTGGGGCATAACATAATGTTTGTATATGTAGATAATTGTGCCTCCCATCTCTCTCTCCCTCCCCCCCCCCCCCCCAAGATAGAAAGAAAAAACATTTTCCCTTTTGGGGTTTAATTAAATAACATAACGTTTAATTACATTCCTCGTGTTCAATAAATGTCGATCATATTTTCTTTTTCCCTTTATTTTTCTGAATTATTTCCAATTGTGTTTTGACCCTCGTGTTTCATCTTTTTGTACGTTTCTTATTAGCTTTTCTATAAGTTAGTGTCAGCCGTTAAAATATGTTAATCTAAATGTAGTGTTTTGATTGTAATGTAATGAATTCCAGATATGTACACCTGCCATCCTATGTGAAGCTCAGAAAGCATTTGAAGCCGCCAGATCTATTCATGACCTCAATGGCATTGCCAGTATTCTGTTGTACCACCCATATCACTTAG ATGTCCGCTCGGCTGCTCAAAAAGGTTTTAAAGGAACAGGAGGAGCTTCGACAGCACTATTCTCAATCCTCCACCACTGAAGACGGACAGGATTCTGGTTCTGGGCCATCGTCACCTACTGCTTCTTCTATCAATCCCTTCGACCTCCTTATCGATGAAGAAGATGACTCCCAAATTGACCCTCACCAGGACAATGACCGGGAGGCGGTTGAGGAAATCTCCGTGGACAGTCGCAAGCAGTTTGTGCGCAATGGAGCTAAAAGTGCTATTTCAACATCAAATAAAAAATTGAAAAAAAAGAAAAAGAAGAAGGAGCGTGAGAGTTTTTCTTCCACAACAGATAGAATCCTTGACAAACCCTTGGATGTGCTTCTCAAATCTCTGTCTCTGGATATTGATCCCTCTGCTATAAGCAGTCCACAGGGCCCTGAGAAAGCCAAAAATGGTGCAGAAGAAAGTGGAAAACAATGTATGCCGTCACTATTAGAAGTGGAGCCTAAATATTTAAATGCCGGAAATGAACTGCGAAGAATATTTGGTGCTAAGGTAGTAAAATCATTTGAAAAAAATAACCAGGCCAGTAGTTCTAGACAACTACGTGGGGGAAGACGTGTCAACCATCTTTCTAGGAAGACCTATCTTGTAAGTCCATCAGATCATTGGCCTCGTTGGGATGGTTCTCTTTCCATGGAGTATTTGGAGTCGAGGAATGGATATCACTACTTCAGATATGTACACCTGCCATCCTATGTGAAGCTCAGAAAGCATTTGAAGCCGCCAGATCTATTCATGACCTCAATGGCATTGCCAGTATTCTGTTGTACCACCCATATCACTTAG ATGTCCGCTCGGCTGCTCAAAAAGGTTTTAAAGGAACAGGAGGAGCTTCGACAGCACTATTCTCAATCCTCCACCACTGAAGACGGACAGGATTCTGGTTCTGGGCCATCGTCACCTACTGCTTCTTCTATCAATCCCTTCGACCTCCTTATCGATGAAGAAGATGACTCCCAAATTGACCCTCACCAGGACAATGACCGGGAGGCGGTTGAGGAAATCTCCGTGGACAGTCGCAAGCAGTTTGTGCGCAATGGAGCTAAAAGTGCTATTTCAACATCAAATAAAAAATTGAAAAAAAAGAAAAAGAAGAAGGAGCGTGAGAGTTTTTCTTCCACAACAGATAGAATCCTTGACAAACCCTTGGATGTGCTTCTCAAATCTCTGTCTCTGGATATTGATCCCTCTGCTATAAGCAGTCCACAGGGCCCTGAGAAAGCCAAAAATGGTGCAGAAGAAAGTGGAAAACAATGTATGCCGTCACTATTAGAAGTGGAGCCTAAATATTTAAATGCCGGAAATGAACTGCGAAGAATATTTGGTGCTAAGGTAGTAAAATCATTTGAAAAAAATAACCAGGCCAGTAGTTCTAGACAACTACGTGGGGGAAGACGTGTCAACCATCTTTCTAGGAAGACCTATCTTGTAAGTCCATCAGATCATTGGCCTCGTTGGGATGGTTCTCTTTCCATGGAGTATTTGGAGTCGAGGAATGGATATCACTACTTCAGATATGTACACCTGCCATCCTATGTGAAGCTCAGAAAGCATTTGAAGCCGCCAGATCTATTCATGACCTCAATGGCATTGCCAGTATTCTGTTGTACCACCCATATCACTTAG MSARLLKKVLKEQEELRQHYSQSSTTEDGQDSGSGPSSPTASSINPFDLLIDEEDDSQIDPHQDNDREAVEEISVDSRKQFVRNGAKSAISTSNKKLKKKKKKKERESFSSTTDRILDKPLDVLLKSLSLDIDPSAISSPQGPEKAKNGAEESGKQCMPSLLEVEPKYLNAGNELRRIFGAKVVKSFEKNNQASSSRQLRGGRRVNHLSRKTYLVSPSDHWPRWDGSLSMEYLESRNGYHYFRYVHLPSYVKLRKHLKPPDLFMTSMALPVFCCTTHIT*
BLAST of MELO3C005936T1 vs. Swiss-Prot
Match: TCF25_MOUSE (Transcription factor 25 OS=Mus musculus GN=Tcf25 PE=1 SV=2) HSP 1 Score: 60.8 bits (146), Expect = 2.7e-08 Identity = 47/167 (28.14%), Postives = 72/167 (43.11%), Query Frame = 1
BLAST of MELO3C005936T1 vs. Swiss-Prot
Match: RCQ1_SCHPO (Ribosome quality control complex subunit 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rqc1 PE=1 SV=2) HSP 1 Score: 58.5 bits (140), Expect = 1.3e-07 Identity = 69/247 (27.94%), Postives = 106/247 (42.91%), Query Frame = 1
BLAST of MELO3C005936T1 vs. Swiss-Prot
Match: TCF25_HUMAN (Transcription factor 25 OS=Homo sapiens GN=TCF25 PE=1 SV=1) HSP 1 Score: 57.4 bits (137), Expect = 2.9e-07 Identity = 45/161 (27.95%), Postives = 73/161 (45.34%), Query Frame = 1
BLAST of MELO3C005936T1 vs. TrEMBL
Match: A0A0A0L889_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G116680 PE=4 SV=1) HSP 1 Score: 472.6 bits (1215), Expect = 3.3e-130 Identity = 235/255 (92.16%), Postives = 245/255 (96.08%), Query Frame = 1
BLAST of MELO3C005936T1 vs. TrEMBL
Match: A0A0D2SZU9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G133000 PE=4 SV=1) HSP 1 Score: 241.5 bits (615), Expect = 1.2e-60 Identity = 140/254 (55.12%), Postives = 174/254 (68.50%), Query Frame = 1
BLAST of MELO3C005936T1 vs. TrEMBL
Match: B9RMZ3_RICCO (Expressed protein, putative OS=Ricinus communis GN=RCOM_1341640 PE=4 SV=1) HSP 1 Score: 240.0 bits (611), Expect = 3.6e-60 Identity = 132/255 (51.76%), Postives = 172/255 (67.45%), Query Frame = 1
BLAST of MELO3C005936T1 vs. TrEMBL
Match: B9I979_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s10510g PE=4 SV=2) HSP 1 Score: 235.7 bits (600), Expect = 6.7e-59 Identity = 136/255 (53.33%), Postives = 177/255 (69.41%), Query Frame = 1
BLAST of MELO3C005936T1 vs. TrEMBL
Match: A0A061DS07_THECC (Nulp1-type, putative OS=Theobroma cacao GN=TCM_004994 PE=4 SV=1) HSP 1 Score: 235.7 bits (600), Expect = 6.7e-59 Identity = 130/253 (51.38%), Postives = 169/253 (66.80%), Query Frame = 1
BLAST of MELO3C005936T1 vs. TAIR10
Match: AT2G46900.1 (AT2G46900.1 Basic helix-loop-helix, Nulp1-type (InterPro:IPR006994)) HSP 1 Score: 158.7 bits (400), Expect = 5.3e-39 Identity = 106/259 (40.93%), Postives = 148/259 (57.14%), Query Frame = 1
BLAST of MELO3C005936T1 vs. NCBI nr
Match: gi|659074717|ref|XP_008437758.1| (PREDICTED: LOW QUALITY PROTEIN: transcription factor 25 [Cucumis melo]) HSP 1 Score: 493.8 bits (1270), Expect = 2.0e-136 Identity = 251/261 (96.17%), Postives = 253/261 (96.93%), Query Frame = 1
BLAST of MELO3C005936T1 vs. NCBI nr
Match: gi|449431938|ref|XP_004133757.1| (PREDICTED: transcription factor 25 [Cucumis sativus]) HSP 1 Score: 472.6 bits (1215), Expect = 4.7e-130 Identity = 235/255 (92.16%), Postives = 245/255 (96.08%), Query Frame = 1
BLAST of MELO3C005936T1 vs. NCBI nr
Match: gi|700201198|gb|KGN56331.1| (hypothetical protein Csa_3G116680 [Cucumis sativus]) HSP 1 Score: 472.6 bits (1215), Expect = 4.7e-130 Identity = 235/255 (92.16%), Postives = 245/255 (96.08%), Query Frame = 1
BLAST of MELO3C005936T1 vs. NCBI nr
Match: gi|823209172|ref|XP_012437866.1| (PREDICTED: transcription factor 25 [Gossypium raimondii]) HSP 1 Score: 241.5 bits (615), Expect = 1.8e-60 Identity = 140/254 (55.12%), Postives = 174/254 (68.50%), Query Frame = 1
BLAST of MELO3C005936T1 vs. NCBI nr
Match: gi|255548151|ref|XP_002515132.1| (PREDICTED: transcription factor 25 [Ricinus communis]) HSP 1 Score: 240.0 bits (611), Expect = 5.1e-60 Identity = 132/255 (51.76%), Postives = 172/255 (67.45%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
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