MU56840 (transcribed_cluster) Melon (DHL92) v3.5.1

NameMU56840
Typetranscribed_cluster
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionUnknown protein
Locationchr6 : 72570 .. 74310 (-)
Sequence length394
The following sequences are available for this feature:

transcribed_cluster sequence

GCACAAAGCTTAGGAAGCCTTGTTGAGACTCAAGACGATAGTCGATTGATTCAACCGTGTTGAATTGCAGGGAGGGATTTGGAATTCGCTGAGACTGAGTACAATTCCTCGGAAAAATGTCCGCTCGGCTGCTCAAAAAGGTTTTAAAGGAACAGGAGGAGCTTCGACAGCACTATTCTCAATCCTCCACCACTGAAGACGGACAGGATTCTGGTTCTGGGCCATCGTCACCTACTGCTTCTTCTATCAATCCCTTCGACCTCCTTATCGATGAAGAAGATGACTCCCAAATTGACCCTCACCAGGACAATGACCGGGAGGCGGTTGAGGAAATCTCCGTGGACAGTCGCAAGCAGTTTGTGCGCAATGGAGCTAAAAGTGCTATTTCAACATC
Library categoryESTs
melon A library1
BLAST of MU56840 vs. TrEMBL
Match: A0A0A0L889_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G116680 PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 8.0e-23
Identity = 60/92 (65.22%), Postives = 63/92 (68.48%), Query Frame = 3

Query: 117 MSARXXXXXXXXXXXXRQHYSQSSTTEDGQDXXXXXXXXXXXXINPFDLLIDEEDDSQID 176
           MSAR            RQHYSQSST EDG D            INPFDLLID+EDDSQID
Sbjct: 1   MSARLLKKVLKEQEELRQHYSQSSTAEDGHDSGSGPSSPTASSINPFDLLIDDEDDSQID 60

Query: 177 PHQDNDREAVEEISVDSRKQFVRNGAKSAIST 236
           PHQDND+EAVEE+SVD  KQFV NGAKSAIST
Sbjct: 61  PHQDNDQEAVEEVSVDRHKQFVCNGAKSAIST 92

Query: 237 296
           
Sbjct: 121 92

Query: 297 356
           
Sbjct: 181 92

Query: 357 393
           
Sbjct: 241 92

BLAST of MU56840 vs. NCBI nr
Match: gi|659074717|ref|XP_008437758.1| (PREDICTED: LOW QUALITY PROTEIN: transcription factor 25 [Cucumis melo])

HSP 1 Score: 116.7 bits (291), Expect = 3.0e-23
Identity = 68/98 (69.39%), Postives = 68/98 (69.39%), Query Frame = 3

Query: 117 MSARXXXXXXXXXXXXRQHYSQSSTTEDGQDXXXXXXXXXXXXINPFDLLIDEEDDSQID 176
           MSAR            RQHYSQSSTTEDGQD            INPFDLLIDEEDDSQID
Sbjct: 1   MSARLLKKVLKEQEELRQHYSQSSTTEDGQDSGSGPSSPTASSINPFDLLIDEEDDSQID 60

Query: 177 PH------QDNDREAVEEISVDSRKQFVRNGAKSAIST 236
           PH      QDNDREAVEEISVDSRKQFVRNGAKSAIST
Sbjct: 61  PHQAVICQQDNDREAVEEISVDSRKQFVRNGAKSAIST 98

Query: 237 296
           
Sbjct: 121 98

Query: 297 356
           
Sbjct: 181 98

Query: 357 393
           
Sbjct: 241 98

BLAST of MU56840 vs. NCBI nr
Match: gi|449431938|ref|XP_004133757.1| (PREDICTED: transcription factor 25 [Cucumis sativus])

HSP 1 Score: 109.4 bits (272), Expect = 4.8e-21
Identity = 60/92 (65.22%), Postives = 63/92 (68.48%), Query Frame = 3

Query: 117 MSARXXXXXXXXXXXXRQHYSQSSTTEDGQDXXXXXXXXXXXXINPFDLLIDEEDDSQID 176
           MSAR            RQHYSQSST EDG D            INPFDLLID+EDDSQID
Sbjct: 1   MSARLLKKVLKEQEELRQHYSQSSTAEDGHDSGSGPSSPTASSINPFDLLIDDEDDSQID 60

Query: 177 PHQDNDREAVEEISVDSRKQFVRNGAKSAIST 236
           PHQDND+EAVEE+SVD  KQFV NGAKSAIST
Sbjct: 61  PHQDNDQEAVEEVSVDRHKQFVCNGAKSAIST 92

Query: 237 296
           
Sbjct: 121 92

Query: 297 356
           
Sbjct: 181 92

Query: 357 393
           
Sbjct: 241 92

BLAST of MU56840 vs. NCBI nr
Match: gi|700201198|gb|KGN56331.1| (hypothetical protein Csa_3G116680 [Cucumis sativus])

HSP 1 Score: 109.4 bits (272), Expect = 4.8e-21
Identity = 60/92 (65.22%), Postives = 63/92 (68.48%), Query Frame = 3

Query: 117 MSARXXXXXXXXXXXXRQHYSQSSTTEDGQDXXXXXXXXXXXXINPFDLLIDEEDDSQID 176
           MSAR            RQHYSQSST EDG D            INPFDLLID+EDDSQID
Sbjct: 1   MSARLLKKVLKEQEELRQHYSQSSTAEDGHDSGSGPSSPTASSINPFDLLIDDEDDSQID 60

Query: 177 PHQDNDREAVEEISVDSRKQFVRNGAKSAIST 236
           PHQDND+EAVEE+SVD  KQFV NGAKSAIST
Sbjct: 61  PHQDNDQEAVEEVSVDRHKQFVCNGAKSAIST 92

Query: 237 296
           
Sbjct: 121 92

Query: 297 356
           
Sbjct: 181 92

Query: 357 393
           
Sbjct: 241 92

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0L889_CUCSA8.0e-2365.22Uncharacterized protein OS=Cucumis sativus GN=Csa_3G116680 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|659074717|ref|XP_008437758.1|3.0e-2369.39PREDICTED: LOW QUALITY PROTEIN: transcription factor 25 [Cucumis melo][more]
gi|449431938|ref|XP_004133757.1|4.8e-2165.22PREDICTED: transcription factor 25 [Cucumis sativus][more]
gi|700201198|gb|KGN56331.1|4.8e-2165.22hypothetical protein Csa_3G116680 [Cucumis sativus][more]

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
MELO3C005936MELO3C005936gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
A33G05A33G05EST