MELO3C005837 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C005837
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionPutative RNA-binding 18
Locationchr9 : 23532965 .. 23533299 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAATTACCGCCTCAGGATTCAAACGGTTTTGTTGATGAGAAGTGTGAAAGCAAACTTTATATTGGCAATCTTGACCTCAGAATTACGGAGTAAGGAAAACTACTGTCCCAGCATTTGCAATGTATTTGTCTTCTAGTTTTCCCGCTTCTATACTAAAGTTTGAATCAATTTGTTTCAGAGCGGCCCTCATTAAACTCTTCTCTCCTTTTGGGAAGATAATATCTGAGGATTTCTTGTGGCACACCCGTGGGCCGAAGCGTGGAGAGCCACGAGGATTTGCCTTCATCGAGTACAGCTCCAAGGAGGTAAGTTGCTTGGTGTTTACCCCTTGA

mRNA sequence

ATGGAATTACCGCCTCAGGATTCAAACGGTTTTGTTGATGAGAAGTGTGAAAGCAAACTTTATATTGGCAATCTTGACCTCAGAATTACGGAAGCGGCCCTCATTAAACTCTTCTCTCCTTTTGGGAAGATAATATCTGAGGATTTCTTGTGGCACACCCGTGGGCCGAAGCGTGGAGAGCCACGAGGATTTGCCTTCATCGAGTACAGCTCCAAGGAGGTAAGTTGCTTGGTGTTTACCCCTTGA

Coding sequence (CDS)

ATGGAATTACCGCCTCAGGATTCAAACGGTTTTGTTGATGAGAAGTGTGAAAGCAAACTTTATATTGGCAATCTTGACCTCAGAATTACGGAAGCGGCCCTCATTAAACTCTTCTCTCCTTTTGGGAAGATAATATCTGAGGATTTCTTGTGGCACACCCGTGGGCCGAAGCGTGGAGAGCCACGAGGATTTGCCTTCATCGAGTACAGCTCCAAGGAGGTAAGTTGCTTGGTGTTTACCCCTTGA

Protein sequence

MELPPQDSNGFVDEKCESKLYIGNLDLRITEAALIKLFSPFGKIISEDFLWHTRGPKRGEPRGFAFIEYSSKEVSCLVFTP*
Homology
[Close]
BLAST of MELO3C005837 vs. Swiss-Prot
Match: RBM18_DANRE (Probable RNA-binding protein 18 OS=Danio rerio GN=rbm18 PE=2 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 7.0e-10
Identity = 27/55 (49.09%), Postives = 37/55 (67.27%), Query Frame = 1 

Query: 19 KLYIGNLDLRITEAALIKLFSPFGKIISEDFLWHTRGPKRGEPRGFAFIEYSSKE 74
          +L+IGN+D +ITE  L+KL   FGK+   DFL+H  GP  G+PRG+ F+ + +KE
Sbjct: 24 RLWIGNIDPKITEYHLVKLLEKFGKVKQFDFLFHKSGPLEGQPRGYCFVNFHTKE 78

[Close]
BLAST of MELO3C005837 vs. Swiss-Prot
Match: RBM18_XENLA (Probable RNA-binding protein 18 OS=Xenopus laevis GN=rbm18 PE=2 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 3.5e-09
Identity = 26/54 (48.15%), Postives = 36/54 (66.67%), Query Frame = 1 

Query: 19 KLYIGNLDLRITEAALIKLFSPFGKIISEDFLWHTRGPKRGEPRGFAFIEYSSK 73
          +L+IGN+D +ITE  L+KL   FGK+   DFL+H  GP  G+PRG+ F+ + +K
Sbjct: 26 RLWIGNVDPKITEYHLLKLLQKFGKVKQFDFLFHKSGPLEGQPRGYCFVNFETK 79

[Close]
BLAST of MELO3C005837 vs. Swiss-Prot
Match: RBM18_MOUSE (Probable RNA-binding protein 18 OS=Mus musculus GN=Rbm18 PE=2 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 7.8e-09
Identity = 26/55 (47.27%), Postives = 36/55 (65.45%), Query Frame = 1 

Query: 19 KLYIGNLDLRITEAALIKLFSPFGKIISEDFLWHTRGPKRGEPRGFAFIEYSSKE 74
          +L+IGNLD +ITE  L+KL   FGK+   DFL+H  G   G+PRG+ F+ + +K+
Sbjct: 26 RLWIGNLDPKITEYHLLKLLQKFGKVKQFDFLFHKSGALEGQPRGYCFVNFETKQ 80

[Close]
BLAST of MELO3C005837 vs. Swiss-Prot
Match: RBM18_PONAB (Probable RNA-binding protein 18 OS=Pongo abelii GN=RBM18 PE=2 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 7.8e-09
Identity = 26/55 (47.27%), Postives = 36/55 (65.45%), Query Frame = 1 

Query: 19 KLYIGNLDLRITEAALIKLFSPFGKIISEDFLWHTRGPKRGEPRGFAFIEYSSKE 74
          +L+IGNLD +ITE  L+KL   FGK+   DFL+H  G   G+PRG+ F+ + +K+
Sbjct: 26 RLWIGNLDPKITEYHLLKLLQKFGKVKQFDFLFHKSGALEGQPRGYCFVNFETKQ 80

[Close]
BLAST of MELO3C005837 vs. Swiss-Prot
Match: RBM18_HUMAN (Probable RNA-binding protein 18 OS=Homo sapiens GN=RBM18 PE=2 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 7.8e-09
Identity = 26/55 (47.27%), Postives = 36/55 (65.45%), Query Frame = 1 

Query: 19 KLYIGNLDLRITEAALIKLFSPFGKIISEDFLWHTRGPKRGEPRGFAFIEYSSKE 74
          +L+IGNLD +ITE  L+KL   FGK+   DFL+H  G   G+PRG+ F+ + +K+
Sbjct: 26 RLWIGNLDPKITEYHLLKLLQKFGKVKQFDFLFHKSGALEGQPRGYCFVNFETKQ 80

[Close]
BLAST of MELO3C005837 vs. TrEMBL
Match: A0A0A0KJM9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G140500 PE=4 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 3.9e-31
Identity = 67/68 (98.53%), Postives = 68/68 (100.00%), Query Frame = 1 

Query: 6   QDSNGFVDEKCESKLYIGNLDLRITEAALIKLFSPFGKIISEDFLWHTRGPKRGEPRGFA 65
           +DSNGFVDEKCESKLYIGNLDLRITEAALIKLFSPFGKIISEDFLWHTRGPKRGEPRGFA
Sbjct: 33  EDSNGFVDEKCESKLYIGNLDLRITEAALIKLFSPFGKIISEDFLWHTRGPKRGEPRGFA 92

Query: 66  FIEYSSKE 74
           FIEYSSKE
Sbjct: 93  FIEYSSKE 100

[Close]
BLAST of MELO3C005837 vs. TrEMBL
Match: B9RIU0_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1582780 PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 3.1e-28
Identity = 58/68 (85.29%), Postives = 67/68 (98.53%), Query Frame = 1 

Query: 6  QDSNGFVDEKCESKLYIGNLDLRITEAALIKLFSPFGKIISEDFLWHTRGPKRGEPRGFA 65
          QDSNGF+DEK ESKLY+GNLDLRITEAALIK+FSP+GKI+SEDFLWHTRGPKRGEPRGFA
Sbjct: 2  QDSNGFIDEKAESKLYVGNLDLRITEAALIKMFSPYGKIVSEDFLWHTRGPKRGEPRGFA 61

Query: 66 FIEYSSKE 74
          F+++S+KE
Sbjct: 62 FVQFSTKE 69

[Close]
BLAST of MELO3C005837 vs. TrEMBL
Match: A0A067JEG3_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26067 PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 5.8e-27
Identity = 57/67 (85.07%), Postives = 65/67 (97.01%), Query Frame = 1 

Query: 7  DSNGFVDEKCESKLYIGNLDLRITEAALIKLFSPFGKIISEDFLWHTRGPKRGEPRGFAF 66
          D NGF+DEK ES+LYIGNLDLRITEAALIK+FSP+GKI+SEDFLWHTRGPKRGEPRGFAF
Sbjct: 2  DPNGFIDEKAESRLYIGNLDLRITEAALIKMFSPYGKIVSEDFLWHTRGPKRGEPRGFAF 61

Query: 67 IEYSSKE 74
          I++S+KE
Sbjct: 62 IQFSTKE 68

[Close]
BLAST of MELO3C005837 vs. TrEMBL
Match: A0A058ZYN7_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_K00291 PE=4 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 1.7e-26
Identity = 59/67 (88.06%), Postives = 63/67 (94.03%), Query Frame = 1 

Query: 7  DSNGFVDEKCESKLYIGNLDLRITEAALIKLFSPFGKIISEDFLWHTRGPKRGEPRGFAF 66
          D N F+DEK ES+LYIGNLDLRITEA LIK+FSPFGKIISEDFLWHTRGPKRGEPRGFAF
Sbjct: 2  DPNRFMDEKSESRLYIGNLDLRITEATLIKMFSPFGKIISEDFLWHTRGPKRGEPRGFAF 61

Query: 67 IEYSSKE 74
          I+YSSKE
Sbjct: 62 IQYSSKE 68

[Close]
BLAST of MELO3C005837 vs. TrEMBL
Match: I3SJ40_MEDTR (Uncharacterized protein OS=Medicago truncatula PE=2 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 4.9e-26
Identity = 55/71 (77.46%), Postives = 66/71 (92.96%), Query Frame = 1 

Query: 7  DSNGFVDEKCESKLYIGNLDLRITEAALIKLFSPFGKIISEDFLWHTRGPKRGEPRGFAF 66
          D NG VD+KCE++LY+GNLDLRITEA L+K+FSP+GKI+SEDFLWHTRGPKRGEPRGFAF
Sbjct: 2  DLNGSVDDKCENRLYVGNLDLRITEATLLKMFSPYGKIMSEDFLWHTRGPKRGEPRGFAF 61

Query: 67 IEYSSKEVSCL 78
          I+YS+KE + L
Sbjct: 62 IQYSTKEEAIL 72

[Close]
BLAST of MELO3C005837 vs. TAIR10
Match: AT5G03580.1 (AT5G03580.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 48.9 bits (115), Expect = 1.7e-06
Identity = 27/60 (45.00%), Postives = 35/60 (58.33%), Query Frame = 1 

Query: 18 SKLYIGNLDLRITEAALIKLFSPFGKII----SEDFLWHTRGPKRGEPRGFAFIEYSSKE 74
          + LYI NLD +++E  L  +FS FGK+I    ++DF        RGE RGFAFIE+ S +
Sbjct: 17 TSLYIANLDAQVSEEMLFLMFSDFGKVIRSVLAKDF--------RGESRGFAFIEFESAD 68

[Close]
BLAST of MELO3C005837 vs. NCBI nr
Match: gi|700194748|gb|KGN49925.1| (hypothetical protein Csa_5G140500 [Cucumis sativus])

HSP 1 Score: 141.7 bits (356), Expect = 5.5e-31
Identity = 67/68 (98.53%), Postives = 68/68 (100.00%), Query Frame = 1 

Query: 6   QDSNGFVDEKCESKLYIGNLDLRITEAALIKLFSPFGKIISEDFLWHTRGPKRGEPRGFA 65
           +DSNGFVDEKCESKLYIGNLDLRITEAALIKLFSPFGKIISEDFLWHTRGPKRGEPRGFA
Sbjct: 33  EDSNGFVDEKCESKLYIGNLDLRITEAALIKLFSPFGKIISEDFLWHTRGPKRGEPRGFA 92

Query: 66  FIEYSSKE 74
           FIEYSSKE
Sbjct: 93  FIEYSSKE 100

[Close]
BLAST of MELO3C005837 vs. NCBI nr
Match: gi|778699047|ref|XP_011654647.1| (PREDICTED: probable RNA-binding protein 18 [Cucumis sativus])

HSP 1 Score: 141.0 bits (354), Expect = 9.5e-31
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 1 

Query: 7  DSNGFVDEKCESKLYIGNLDLRITEAALIKLFSPFGKIISEDFLWHTRGPKRGEPRGFAF 66
          DSNGFVDEKCESKLYIGNLDLRITEAALIKLFSPFGKIISEDFLWHTRGPKRGEPRGFAF
Sbjct: 2  DSNGFVDEKCESKLYIGNLDLRITEAALIKLFSPFGKIISEDFLWHTRGPKRGEPRGFAF 61

Query: 67 IEYSSKE 74
          IEYSSKE
Sbjct: 62 IEYSSKE 68

[Close]
BLAST of MELO3C005837 vs. NCBI nr
Match: gi|659074295|ref|XP_008437528.1| (PREDICTED: probable RNA-binding protein 18 [Cucumis melo])

HSP 1 Score: 141.0 bits (354), Expect = 9.5e-31
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 1 

Query: 7  DSNGFVDEKCESKLYIGNLDLRITEAALIKLFSPFGKIISEDFLWHTRGPKRGEPRGFAF 66
          DSNGFVDEKCESKLYIGNLDLRITEAALIKLFSPFGKIISEDFLWHTRGPKRGEPRGFAF
Sbjct: 2  DSNGFVDEKCESKLYIGNLDLRITEAALIKLFSPFGKIISEDFLWHTRGPKRGEPRGFAF 61

Query: 67 IEYSSKE 74
          IEYSSKE
Sbjct: 62 IEYSSKE 68

[Close]
BLAST of MELO3C005837 vs. NCBI nr
Match: gi|823182534|ref|XP_012488544.1| (PREDICTED: probable RNA-binding protein 18 isoform X1 [Gossypium raimondii])

HSP 1 Score: 134.0 bits (336), Expect = 1.2e-28
Identity = 61/74 (82.43%), Postives = 68/74 (91.89%), Query Frame = 1 

Query: 6  QDSNGFVDEKCESKLYIGNLDLRITEAALIKLFSPFGKIISEDFLWHTRGPKRGEPRGFA 65
          QD   F DE+ ES+LY+GNLDLRITEAALIK+FSP+GKIISEDFLWHTRGPKRGEPRGFA
Sbjct: 5  QDPRSFADERSESRLYVGNLDLRITEAALIKMFSPYGKIISEDFLWHTRGPKRGEPRGFA 64

Query: 66 FIEYSSKEVSCLVF 80
          FI+YS+KEVSCL F
Sbjct: 65 FIQYSTKEVSCLFF 78

[Close]
BLAST of MELO3C005837 vs. NCBI nr
Match: gi|223547567|gb|EEF49062.1| (conserved hypothetical protein [Ricinus communis])

HSP 1 Score: 132.1 bits (331), Expect = 4.4e-28
Identity = 58/68 (85.29%), Postives = 67/68 (98.53%), Query Frame = 1 

Query: 6  QDSNGFVDEKCESKLYIGNLDLRITEAALIKLFSPFGKIISEDFLWHTRGPKRGEPRGFA 65
          QDSNGF+DEK ESKLY+GNLDLRITEAALIK+FSP+GKI+SEDFLWHTRGPKRGEPRGFA
Sbjct: 2  QDSNGFIDEKAESKLYVGNLDLRITEAALIKMFSPYGKIVSEDFLWHTRGPKRGEPRGFA 61

Query: 66 FIEYSSKE 74
          F+++S+KE
Sbjct: 62 FVQFSTKE 69

The following BLAST results are available for this feature:
BLAST of MELO3C005837 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RBM18_DANRE7.0e-1049.09Probable RNA-binding protein 18 OS=Danio rerio GN=rbm18 PE=2 SV=1[more]
RBM18_XENLA3.5e-0948.15Probable RNA-binding protein 18 OS=Xenopus laevis GN=rbm18 PE=2 SV=1[more]
RBM18_MOUSE7.8e-0947.27Probable RNA-binding protein 18 OS=Mus musculus GN=Rbm18 PE=2 SV=1[more]
RBM18_PONAB7.8e-0947.27Probable RNA-binding protein 18 OS=Pongo abelii GN=RBM18 PE=2 SV=1[more]
RBM18_HUMAN7.8e-0947.27Probable RNA-binding protein 18 OS=Homo sapiens GN=RBM18 PE=2 SV=1[more]
BLAST of MELO3C005837 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KJM9_CUCSA3.9e-3198.53Uncharacterized protein OS=Cucumis sativus GN=Csa_5G140500 PE=4 SV=1[more]
B9RIU0_RICCO3.1e-2885.29Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1582780 PE=4 SV=1[more]
A0A067JEG3_JATCU5.8e-2785.07Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26067 PE=4 SV=1[more]
A0A058ZYN7_EUCGR1.7e-2688.06Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_K00291 PE=4 SV=1[more]
I3SJ40_MEDTR4.9e-2677.46Uncharacterized protein OS=Medicago truncatula PE=2 SV=1[more]
BLAST of MELO3C005837 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G03580.11.7e-0645.00 RNA-binding (RRM/RBD/RNP motifs) family protein[more]
BLAST of MELO3C005837 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700194748|gb|KGN49925.1|5.5e-3198.53hypothetical protein Csa_5G140500 [Cucumis sativus][more]
gi|778699047|ref|XP_011654647.1|9.5e-31100.00PREDICTED: probable RNA-binding protein 18 [Cucumis sativus][more]
gi|659074295|ref|XP_008437528.1|9.5e-31100.00PREDICTED: probable RNA-binding protein 18 [Cucumis melo][more]
gi|823182534|ref|XP_012488544.1|1.2e-2882.43PREDICTED: probable RNA-binding protein 18 isoform X1 [Gossypium raimondii][more]
gi|223547567|gb|EEF49062.1|4.4e-2885.29conserved hypothetical protein [Ricinus communis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0000166nucleotide binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0000166 nucleotide binding
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
MU60812melon EST collection version 4.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C005837T1MELO3C005837T1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
MU60812MU60812transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 20..73
score: 1.6
IPR000504RNA recognition motif domainPROFILEPS50102RRMcoord: 18..73
score: 12
IPR012677Nucleotide-binding alpha-beta plait domainGENE3DG3DSA:3.30.70.330coord: 6..73
score: 1.6
IPR012677Nucleotide-binding alpha-beta plait domainunknownSSF54928RNA-binding domain, RBDcoord: 4..73
score: 6.18
NoneNo IPR availablePANTHERPTHR21245FAMILY NOT NAMEDcoord: 13..73
score: 1.2
NoneNo IPR availablePANTHERPTHR21245:SF2RNA-BINDING PROTEIN 18-RELATEDcoord: 13..73
score: 1.2

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C005837Melon (DHL92) v3.5.1memeB022
MELO3C005837Cucumber (Gy14) v1cgymeB138
MELO3C005837Cucumber (Gy14) v1cgymeB350
MELO3C005837Cucurbita maxima (Rimu)cmameB257
MELO3C005837Cucurbita maxima (Rimu)cmameB283
MELO3C005837Cucurbita maxima (Rimu)cmameB527
MELO3C005837Cucurbita moschata (Rifu)cmomeB246
MELO3C005837Cucurbita moschata (Rifu)cmomeB275
MELO3C005837Cucurbita moschata (Rifu)cmomeB515
MELO3C005837Wild cucumber (PI 183967)cpimeB261
MELO3C005837Wild cucumber (PI 183967)cpimeB348
MELO3C005837Cucumber (Chinese Long) v2cumeB357
MELO3C005837Watermelon (Charleston Gray)mewcgB026
MELO3C005837Watermelon (Charleston Gray)mewcgB018
MELO3C005837Watermelon (Charleston Gray)mewcgB036
MELO3C005837Watermelon (97103) v1mewmB018
MELO3C005837Watermelon (97103) v1mewmB029
MELO3C005837Cucurbita pepo (Zucchini)cpemeB148
MELO3C005837Cucurbita pepo (Zucchini)cpemeB179
MELO3C005837Cucurbita pepo (Zucchini)cpemeB651
MELO3C005837Bottle gourd (USVL1VR-Ls)lsimeB012
MELO3C005837Bottle gourd (USVL1VR-Ls)lsimeB341
MELO3C005837Cucumber (Gy14) v2cgybmeB229
MELO3C005837Cucumber (Gy14) v2cgybmeB298
MELO3C005837Silver-seed gourdcarmeB0549
MELO3C005837Silver-seed gourdcarmeB0707
MELO3C005837Silver-seed gourdcarmeB0962
MELO3C005837Cucumber (Chinese Long) v3cucmeB268
MELO3C005837Cucumber (Chinese Long) v3cucmeB357
MELO3C005837Watermelon (97103) v2mewmbB008
MELO3C005837Watermelon (97103) v2mewmbB023
MELO3C005837Watermelon (97103) v2mewmbB034
MELO3C005837Wax gourdmewgoB018
MELO3C005837Wax gourdmewgoB041