MU60812 (transcribed_cluster) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MU60812
Type	transcribed_cluster
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	RNA-binding protein
Location	chr9 : 23532672 .. 23535469 (-)
Sequence length	584

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

TACAAATCGTAAACCCATCTTCCCAATCTGCGTTCTATTCTTTGATCTGTAACTTTATATGCGTGGAGTCCAGAAAATTTCTTCTACTCTGTGGAACTGAAACTTACAAATTTTCTATCTTATGTTATGGATTCAAACGGTTTTGTTGATGAGAAGTGTGAAAGCAAACTTTATATTGGCAATCTTGACCTCAGAATTACGGAAGCGGCCCTCATTAAACTCTTCTCTCCTTTTGGGAAGATAATATCTGAGGATTTCTTGTGGCACACCCGTGGGCCGAAGCGTGGAGAGCCACGAGGATTTGCCTTCATCGAGTACAGCTCCAAGGAGTGAGTATGCAGGAAGCTAAATTGGCTAAAGAGAAGATGCATGGGAAATTAGCTTGCGGTCGTCCGTTGGTCGTCCGCCTCGCTAGTGAAAAGCTCATGGTGAACACAGCAAATGATACTTCAAAAGCAGCAAGCGAGTCAAGAAAATCAAGACTCGGTGGCAGCAGTTATGGACAGTTGACTCGCAGCGATAAGATTGCTGCCATAAAGAATAAATTGAGAGCTTTGGAAGGAGGTGGGGAGAGCTCTAGTGTG

Library


Library category	ESTs
Tam Dew mature fruit library	1

Homology

[Close]

BLAST of MU60812 vs. Swiss-Prot
Match: RBM18_DANRE (Probable RNA-binding protein 18 OS=Danio rerio GN=rbm18 PE=2 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 8.0e-12
Identity = 38/106 (35.85%), Postives = 57/106 (53.77%), Query Frame = 1


Query: 166 KLYIGNLDLRITEAALIKLFSPFGKIISEDFLWHTRGPKRGEPRGFAFIEYSSKE*VCRK 225
           +L+IGN+D +ITE  L+KL   FGK+   DFL+H  GP  G+PRG+ F+ + +KE   R 
Sbjct: 24  RLWIGNIDPKITEYHLVKLLEKFGKVKQFDFLFHKSGPLEGQPRGYCFVNFHTKEEAERA 83

Query: 226 LNWLKRRCMGN*LAVVRWSSASLVKSSW*TQQMILQKQQASQENQD 285
           +  L  +   +   VVRW+ A   +     + M    + +S E +D
Sbjct: 84  IQCLNGKLALSKKLVVRWAHAQRFEPFRGEKNMPASLEPSSSEAED 129

Query: 286  345
           
Sbjct: 144  129

Query: 346  405
           
Sbjct: 204  129

Query: 406  465
           
Sbjct: 264  129

Query: 466  484
           
Sbjct: 324  129

[Close]

BLAST of MU60812 vs. Swiss-Prot
Match: RBM18_XENLA (Probable RNA-binding protein 18 OS=Xenopus laevis GN=rbm18 PE=2 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 6.8e-11
Identity = 33/83 (39.76%), Postives = 49/83 (59.04%), Query Frame = 1


Query: 166 KLYIGNLDLRITEAALIKLFSPFGKIISEDFLWHTRGPKRGEPRGFAFIEYSSKE*VCRK 225
           +L+IGN+D +ITE  L+KL   FGK+   DFL+H  GP  G+PRG+ F+ + +K    R 
Sbjct: 26  RLWIGNVDPKITEYHLLKLLQKFGKVKQFDFLFHKSGPLEGQPRGYCFVNFETKAEAERA 85

Query: 226 LNWLKRRCMGN*LAVVRWSSASL 285
           ++ L  +   +   VVRW+ A +
Sbjct: 86  IHCLNGKMALSKKLVVRWAHAQI 108

Query: 286  345
           
Sbjct: 146  108

Query: 346  405
           
Sbjct: 206  108

Query: 406  415
           
Sbjct: 266  108

[Close]

BLAST of MU60812 vs. Swiss-Prot
Match: RBM18_PONAB (Probable RNA-binding protein 18 OS=Pongo abelii GN=RBM18 PE=2 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 5.7e-10
Identity = 32/83 (38.55%), Postives = 48/83 (57.83%), Query Frame = 1


Query: 166 KLYIGNLDLRITEAALIKLFSPFGKIISEDFLWHTRGPKRGEPRGFAFIEYSSKE*VCRK 225
           +L+IGNLD +ITE  L+KL   FGK+   DFL+H  G   G+PRG+ F+ + +K+   + 
Sbjct: 26  RLWIGNLDPKITEYHLLKLLQKFGKVKQFDFLFHKSGALEGQPRGYCFVNFETKQEAEQA 85

Query: 226 LNWLKRRCMGN*LAVVRWSSASL 285
           +  L  +   +   VVRW+ A +
Sbjct: 86  IQCLNGKLALSKKLVVRWAHAQV 108

Query: 286  345
           
Sbjct: 146  108

Query: 346  405
           
Sbjct: 206  108

Query: 406  415
           
Sbjct: 266  108

[Close]

BLAST of MU60812 vs. Swiss-Prot
Match: RBM18_MOUSE (Probable RNA-binding protein 18 OS=Mus musculus GN=Rbm18 PE=2 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 5.7e-10
Identity = 32/83 (38.55%), Postives = 48/83 (57.83%), Query Frame = 1


Query: 166 KLYIGNLDLRITEAALIKLFSPFGKIISEDFLWHTRGPKRGEPRGFAFIEYSSKE*VCRK 225
           +L+IGNLD +ITE  L+KL   FGK+   DFL+H  G   G+PRG+ F+ + +K+   + 
Sbjct: 26  RLWIGNLDPKITEYHLLKLLQKFGKVKQFDFLFHKSGALEGQPRGYCFVNFETKQEAEQA 85

Query: 226 LNWLKRRCMGN*LAVVRWSSASL 285
           +  L  +   +   VVRW+ A +
Sbjct: 86  IQCLNGKLALSKKLVVRWAHAQV 108

Query: 286  345
           
Sbjct: 146  108

Query: 346  405
           
Sbjct: 206  108

Query: 406  415
           
Sbjct: 266  108

[Close]

BLAST of MU60812 vs. Swiss-Prot
Match: RBM18_HUMAN (Probable RNA-binding protein 18 OS=Homo sapiens GN=RBM18 PE=2 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 5.7e-10
Identity = 32/83 (38.55%), Postives = 48/83 (57.83%), Query Frame = 1


Query: 166 KLYIGNLDLRITEAALIKLFSPFGKIISEDFLWHTRGPKRGEPRGFAFIEYSSKE*VCRK 225
           +L+IGNLD +ITE  L+KL   FGK+   DFL+H  G   G+PRG+ F+ + +K+   + 
Sbjct: 26  RLWIGNLDPKITEYHLLKLLQKFGKVKQFDFLFHKSGALEGQPRGYCFVNFETKQEAEQA 85

Query: 226 LNWLKRRCMGN*LAVVRWSSASL 285
           +  L  +   +   VVRW+ A +
Sbjct: 86  IQCLNGKLALSKKLVVRWAHAQV 108

Query: 286  345
           
Sbjct: 146  108

Query: 346  405
           
Sbjct: 206  108

Query: 406  415
           
Sbjct: 266  108

[Close]

BLAST of MU60812 vs. TrEMBL
Match: E5GBC9_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 3.2e-36
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 3


Query: 336 MQEAKLAKEKMHGKLACGRPLVVRLASEKLMVNTANDTSKAASESRKSRLGGSSYGQLTR 395
           MQEAKLAKEKMHGKLACGRPLVVRLASEKLMVNTANDTSKAASESRKSRLGGSSYGQLTR
Sbjct: 1   MQEAKLAKEKMHGKLACGRPLVVRLASEKLMVNTANDTSKAASESRKSRLGGSSYGQLTR 60

Query: 396 SDKIAAIKNKLRALEGGGESSSV 455
           SDKIAAIKNKLRALEGGGESSSV
Sbjct: 61  SDKIAAIKNKLRALEGGGESSSV 83

Query: 456  515
           
Sbjct: 121  83

Query: 516  575
           
Sbjct: 181  83

Query: 576  585
           
Sbjct: 241  83

[Close]

BLAST of MU60812 vs. TrEMBL
Match: A0A0A0KJM9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G140500 PE=4 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 6.8e-34
Identity = 78/84 (92.86%), Postives = 80/84 (95.24%), Query Frame = 3


Query: 333 SMQEAKLAKEKMHGKLACGRPLVVRLASEKLMVNTANDTSKAASESRKSRLGGSSYGQLT 392
           S +EAKLAKEKMHGKLACGRPLVVRLASEKLM NT NDTS+ ASESRKSRLGGSSYGQLT
Sbjct: 98  SKEEAKLAKEKMHGKLACGRPLVVRLASEKLMTNTTNDTSRTASESRKSRLGGSSYGQLT 157

Query: 393 RSDKIAAIKNKLRALEGGGESSSV 452
           RSDKIAAIKNKLRALEGGGESSSV
Sbjct: 158 RSDKIAAIKNKLRALEGGGESSSV 181

Query: 453  512
           
Sbjct: 218  181

Query: 513  572
           
Sbjct: 278  181

Query: 573  585
           
Sbjct: 338  181

[Close]

BLAST of MU60812 vs. TrEMBL
Match: A0A0A0KJM9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G140500 PE=4 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 7.0e-31
Identity = 72/89 (80.90%), Postives = 76/89 (85.39%), Query Frame = 1


Query: 73  ENFFYSVELKLTNFLSYV---MDSNGFVDEKCESKLYIGNLDLRITEAALIKLFSPFGKI 132
           ENF  S ++K  + +       DSNGFVDEKCESKLYIGNLDLRITEAALIKLFSPFGKI
Sbjct: 12  ENFGPSFKIKAVSLVEKEGESEDSNGFVDEKCESKLYIGNLDLRITEAALIKLFSPFGKI 71

Query: 133 ISEDFLWHTRGPKRGEPRGFAFIEYSSKE 192
           ISEDFLWHTRGPKRGEPRGFAFIEYSSKE
Sbjct: 72  ISEDFLWHTRGPKRGEPRGFAFIEYSSKE 100

Query: 193  252
           
Sbjct: 132  100

Query: 253  312
           
Sbjct: 192  100

Query: 313  331
           
Sbjct: 252  100

HSP 2 Score: 130.6 bits (327), Expect = 2.1e-27
Identity = 57/69 (82.61%), Postives = 67/69 (97.10%), Query Frame = 1


Query: 124 VMDSNGFVDEKCESKLYIGNLDLRITEAALIKLFSPFGKIISEDFLWHTRGPKRGEPRGF 183
           + DSNGF+DEK ESKLY+GNLDLRITEAALIK+FSP+GKI+SEDFLWHTRGPKRGEPRGF
Sbjct: 1   MQDSNGFIDEKAESKLYVGNLDLRITEAALIKMFSPYGKIVSEDFLWHTRGPKRGEPRGF 60

Query: 184 AFIEYSSKE 243
           AF+++S+KE
Sbjct: 61  AFVQFSTKE 69

Query: 244  303
           
Sbjct: 121  69

Query: 304  331
           
Sbjct: 181  69

[Close]

BLAST of MU60812 vs. TrEMBL
Match: B9RIU0_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1582780 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 9.8e-17
Identity = 48/85 (56.47%), Postives = 63/85 (74.12%), Query Frame = 3


Query: 321 LQGVSMQEAKLAKEKMHGKLACGRPLVVRLASEKLMVNTANDTSKAASESRKSRLGGSSY 380
           +Q  + +EA+LAKEKMHG+LACGRPLVVRLASEK +   A ++ +A  E +K+   G + 
Sbjct: 63  VQFSTKEEAELAKEKMHGRLACGRPLVVRLASEKYLEEAAQNSCRAVGEMKKTSTAGGTS 122

Query: 381 GQLTRSDKIAAIKNKLRALEGGGES 440
           GQ++R+ KIAAIKNKLR LE  G S
Sbjct: 123 GQMSRNAKIAAIKNKLRTLEEEGSS 147

Query: 441  500
           
Sbjct: 183  147

Query: 501  560
           
Sbjct: 243  147

Query: 561  576
           
Sbjct: 303  147

HSP 2 Score: 129.8 bits (325), Expect = 3.6e-27
Identity = 58/68 (85.29%), Postives = 66/68 (97.06%), Query Frame = 1


Query: 127 MDSNGFVDEKCESKLYIGNLDLRITEAALIKLFSPFGKIISEDFLWHTRGPKRGEPRGFA 186
           MD NGF+DEK ES+LYIGNLDLRITEAALIK+FSP+GKI+SEDFLWHTRGPKRGEPRGFA
Sbjct: 1   MDPNGFIDEKAESRLYIGNLDLRITEAALIKMFSPYGKIVSEDFLWHTRGPKRGEPRGFA 60

Query: 187 FIEYSSKE 246
           FI++S+KE
Sbjct: 61  FIQFSTKE 68

Query: 247  306
           
Sbjct: 121  68

Query: 307  331
           
Sbjct: 181  68

[Close]

BLAST of MU60812 vs. TrEMBL
Match: A0A067JEG3_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26067 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 4.7e-19
Identity = 54/85 (63.53%), Postives = 65/85 (76.47%), Query Frame = 3


Query: 321 LQGVSMQEAKLAKEKMHGKLACGRPLVVRLASEKLMVNTANDTSKAASESRKSRLGGSSY 380
           +Q  + +EAKLAKEKMHGKLACGRPLVVRLASEK M   A ++S+A  E  K+ + G + 
Sbjct: 62  IQFSTKEEAKLAKEKMHGKLACGRPLVVRLASEKCMEEVAQNSSRAVGEMNKTGIVGGTS 121

Query: 381 GQLTRSDKIAAIKNKLRALEGGGES 440
           GQ++RS KIAAIKNKLRALE  G S
Sbjct: 122 GQMSRSAKIAAIKNKLRALEEEGSS 146

Query: 441  500
           
Sbjct: 182  146

Query: 501  560
           
Sbjct: 242  146

Query: 561  576
           
Sbjct: 302  146

HSP 2 Score: 128.6 bits (322), Expect = 8.0e-27
Identity = 75/151 (49.67%), Postives = 99/151 (65.56%), Query Frame = 1


Query: 85  YSVELKLTNFLSYVM--DSNGFVDEKCESKLYIGNLDLRITEAALIKLFSPFGKIISEDF 144
           +S + KL  +L+ ++  D+ GFVDEK ES+LY+GNLDLRI EAALIK+FSP+GKIISEDF
Sbjct: 11  FSTQSKLAFYLASLLREDTIGFVDEKSESRLYVGNLDLRINEAALIKMFSPYGKIISEDF 70

Query: 145 LWHTRGPKRGEPRGFAFIEYSSKE*VCRKLNWLKRRCMGN*LAVVRWSSASLVKSSW*TQ 204
           LWHTRGPK+GEPRG+AFI+YSSKE        +  R       VVR+S   L  SS    
Sbjct: 71  LWHTRGPKKGEPRGYAFIQYSSKEEAELAKEKMHGRLACGRPLVVRFSDKLLEDSSHDRP 130

Query: 205 QMILQKQQASQENQDSVAAVM--DS*LAAIR 264
           + +L +   ++    S +  M  D  +AAI+
Sbjct: 131 KRLLPEANRTRSASGSSSGQMSRDEKVAAIK 161

Query: 265  324
           
Sbjct: 191  161

Query: 325  384
           
Sbjct: 251  161

Query: 385  444
           
Sbjct: 311  161

Query: 445  504
           
Sbjct: 371  161

Query: 505  526
           
Sbjct: 431  161

[Close]

BLAST of MU60812 vs. TAIR10
Match: AT5G52545.1 (AT5G52545.1 unknown protein)

HSP 1 Score: 74.7 bits (182), Expect = 7.0e-14
Identity = 39/67 (58.21%), Postives = 52/67 (77.61%), Query Frame = 3


Query: 366 MHGKLACGRPLVVRLASEKLMVNTANDTSK-AASESRKSR-LGGSSYGQLTRSDKIAAIK 425
           MHG+LACGRPLVVRLASEK + ++++D SK +  E  ++R + GSS GQ++R +K+ AIK
Sbjct: 1   MHGRLACGRPLVVRLASEKHLEDSSHDHSKRSLPEGNRTRFVNGSSSGQMSRDEKVTAIK 60

Query: 426 NKLRALE 485
           NKL+ALE
Sbjct: 61  NKLKALE 67

Query: 486  545
           
Sbjct: 121  67

Query: 546  561
           
Sbjct: 181  67

[Close]

BLAST of MU60812 vs. TAIR10
Match: AT5G03580.1 (AT5G03580.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 50.8 bits (120), Expect = 1.1e-06
Identity = 31/82 (37.80%), Postives = 44/82 (53.66%), Query Frame = 1


Query: 163 SKLYIGNLDLRITEAALIKLFSPFGKII----SEDFLWHTRGPKRGEPRGFAFIEYSSKE 222
           + LYI NLD +++E  L  +FS FGK+I    ++DF        RGE RGFAFIE+ S +
Sbjct: 17  TSLYIANLDAQVSEEMLFLMFSDFGKVIRSVLAKDF--------RGESRGFAFIEFESAD 76

Query: 223 *VCRKLNWLKRRCMGN*LAVVR 282
              R +  +  R +G  +  V+
Sbjct: 77  SAGRAMLHMDGRLIGQKILCVQ 90

Query: 283  342
           
Sbjct: 137  90

Query: 343  397
           
Sbjct: 197  90

[Close]

BLAST of MU60812 vs. NCBI nr
Match: gi|307135920|gb|ADN33783.1| (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 154.8 bits (390), Expect = 1.5e-34
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 3


Query: 336 MQEAKLAKEKMHGKLACGRPLVVRLASEKLMVNTANDTSKAASESRKSRLGGSSYGQLTR 395
           MQEAKLAKEKMHGKLACGRPLVVRLASEKLMVNTANDTSKAASESRKSRLGGSSYGQLTR
Sbjct: 1   MQEAKLAKEKMHGKLACGRPLVVRLASEKLMVNTANDTSKAASESRKSRLGGSSYGQLTR 60

Query: 396 SDKIAAIKNKLRALEGGGESSSV 455
           SDKIAAIKNKLRALEGGGESSSV
Sbjct: 61  SDKIAAIKNKLRALEGGGESSSV 83

Query: 456  515
           
Sbjct: 121  83

Query: 516  575
           
Sbjct: 181  83

Query: 576  585
           
Sbjct: 241  83

[Close]

BLAST of MU60812 vs. NCBI nr
Match: gi|659074295|ref|XP_008437528.1| (PREDICTED: probable RNA-binding protein 18 [Cucumis melo])

HSP 1 Score: 152.9 bits (385), Expect = 5.7e-34
Identity = 82/84 (97.62%), Postives = 83/84 (98.81%), Query Frame = 3


Query: 333 SMQEAKLAKEKMHGKLACGRPLVVRLASEKLMVNTANDTSKAASESRKSRLGGSSYGQLT 392
           S +EAKLAKEKMHGKLACGRPLVVRLASEKLMVNTANDTSKAASESRKSRLGGSSYGQLT
Sbjct: 66  SKEEAKLAKEKMHGKLACGRPLVVRLASEKLMVNTANDTSKAASESRKSRLGGSSYGQLT 125

Query: 393 RSDKIAAIKNKLRALEGGGESSSV 452
           RSDKIAAIKNKLRALEGGGESSSV
Sbjct: 126 RSDKIAAIKNKLRALEGGGESSSV 149

Query: 453  512
           
Sbjct: 186  149

Query: 513  572
           
Sbjct: 246  149

Query: 573  585
           
Sbjct: 306  149

[Close]

BLAST of MU60812 vs. NCBI nr
Match: gi|778699047|ref|XP_011654647.1| (PREDICTED: probable RNA-binding protein 18 [Cucumis sativus])

HSP 1 Score: 147.1 bits (370), Expect = 3.1e-32
Identity = 78/84 (92.86%), Postives = 80/84 (95.24%), Query Frame = 3


Query: 333 SMQEAKLAKEKMHGKLACGRPLVVRLASEKLMVNTANDTSKAASESRKSRLGGSSYGQLT 392
           S +EAKLAKEKMHGKLACGRPLVVRLASEKLM NT NDTS+ ASESRKSRLGGSSYGQLT
Sbjct: 66  SKEEAKLAKEKMHGKLACGRPLVVRLASEKLMTNTTNDTSRTASESRKSRLGGSSYGQLT 125

Query: 393 RSDKIAAIKNKLRALEGGGESSSV 452
           RSDKIAAIKNKLRALEGGGESSSV
Sbjct: 126 RSDKIAAIKNKLRALEGGGESSSV 149

Query: 453  512
           
Sbjct: 186  149

Query: 513  572
           
Sbjct: 246  149

Query: 573  585
           
Sbjct: 306  149

[Close]

BLAST of MU60812 vs. NCBI nr
Match: gi|700194748|gb|KGN49925.1| (hypothetical protein Csa_5G140500 [Cucumis sativus])

HSP 1 Score: 147.1 bits (370), Expect = 3.1e-32
Identity = 78/84 (92.86%), Postives = 80/84 (95.24%), Query Frame = 3


Query: 333 SMQEAKLAKEKMHGKLACGRPLVVRLASEKLMVNTANDTSKAASESRKSRLGGSSYGQLT 392
           S +EAKLAKEKMHGKLACGRPLVVRLASEKLM NT NDTS+ ASESRKSRLGGSSYGQLT
Sbjct: 98  SKEEAKLAKEKMHGKLACGRPLVVRLASEKLMTNTTNDTSRTASESRKSRLGGSSYGQLT 157

Query: 393 RSDKIAAIKNKLRALEGGGESSSV 452
           RSDKIAAIKNKLRALEGGGESSSV
Sbjct: 158 RSDKIAAIKNKLRALEGGGESSSV 181

Query: 453  512
           
Sbjct: 218  181

Query: 513  572
           
Sbjct: 278  181

Query: 573  585
           
Sbjct: 338  181

[Close]

BLAST of MU60812 vs. NCBI nr
Match: gi|1000978889|ref|XP_002513659.2| (PREDICTED: probable RNA-binding protein 18 isoform X1 [Ricinus communis])

HSP 1 Score: 136.3 bits (342), Expect = 5.5e-29
Identity = 58/68 (85.29%), Postives = 67/68 (98.53%), Query Frame = 1


Query: 127 MDSNGFVDEKCESKLYIGNLDLRITEAALIKLFSPFGKIISEDFLWHTRGPKRGEPRGFA 186
           MDSNGF+DEK ESKLY+GNLDLRITEAALIK+FSP+GKI+SEDFLWHTRGPKRGEPRGFA
Sbjct: 27  MDSNGFIDEKAESKLYVGNLDLRITEAALIKMFSPYGKIVSEDFLWHTRGPKRGEPRGFA 86

Query: 187 FIEYSSKE 246
           F+++S+KE
Sbjct: 87  FVQFSTKE 94

Query: 247  306
           
Sbjct: 147  94

Query: 307  331
           
Sbjct: 207  94

The following BLAST results are available for this feature:

BLAST of MU60812 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RBM18_DANRE	8.0e-12	35.85	Probable RNA-binding protein 18 OS=Danio rerio GN=rbm18 PE=2 SV=1	[more]
RBM18_XENLA	6.8e-11	39.76	Probable RNA-binding protein 18 OS=Xenopus laevis GN=rbm18 PE=2 SV=1	[more]
RBM18_PONAB	5.7e-10	38.55	Probable RNA-binding protein 18 OS=Pongo abelii GN=RBM18 PE=2 SV=1	[more]
RBM18_MOUSE	5.7e-10	38.55	Probable RNA-binding protein 18 OS=Mus musculus GN=Rbm18 PE=2 SV=1	[more]
RBM18_HUMAN	5.7e-10	38.55	Probable RNA-binding protein 18 OS=Homo sapiens GN=RBM18 PE=2 SV=1	[more]

BLAST of MU60812 vs. TrEMBL


Match Name	E-value	Identity	Description
E5GBC9_CUCME	3.2e-36	100.00	Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
A0A0A0KJM9_CUCSA	6.8e-34	92.86	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G140500 PE=4 SV=1	[more]
A0A0A0KJM9_CUCSA	7.0e-31	80.90	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G140500 PE=4 SV=1	[more]
B9RIU0_RICCO	9.8e-17	56.47	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1582780 PE=4 SV=1	[more]
A0A067JEG3_JATCU	4.7e-19	63.53	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26067 PE=4 SV=1	[more]

BLAST of MU60812 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G52545.1	7.0e-14	58.21	unknown protein	[more]
AT5G03580.1	1.1e-06	37.80	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

BLAST of MU60812 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|307135920\|gb\|ADN33783.1\|	1.5e-34	100.00	hypothetical protein [Cucumis melo subsp. melo]	[more]
gi\|659074295\|ref\|XP_008437528.1\|	5.7e-34	97.62	PREDICTED: probable RNA-binding protein 18 [Cucumis melo]	[more]
gi\|778699047\|ref\|XP_011654647.1\|	3.1e-32	92.86	PREDICTED: probable RNA-binding protein 18 [Cucumis sativus]	[more]
gi\|700194748\|gb\|KGN49925.1\|	3.1e-32	92.86	hypothetical protein Csa_5G140500 [Cucumis sativus]	[more]
gi\|1000978889\|ref\|XP_002513659.2\|	5.5e-29	85.29	PREDICTED: probable RNA-binding protein 18 isoform X1 [Ricinus communis]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding
GO:0000166	nucleotide binding

GO Annotation

GO Assignments

This transcribed_cluster is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0000166	nucleotide binding

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C005837	MELO3C005837	gene
MELO3C005836	MELO3C005836	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
FR18O17	FR18O17	EST

InterPro

Analysis Name: InterPro Annotations of melon unigene v4
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 15..91 score: 5.5
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 14..94 score: 8.2
IPR000504	RNA recognition motif domain	PROFILE	PS50102	RRM	coord: 13..98 score: 15
IPR012677	Nucleotide-binding alpha-beta plait domain	GENE3D	G3DSA:3.30.70.330		coord: 8..99 score: 1.9
IPR012677	Nucleotide-binding alpha-beta plait domain	unknown	SSF54928	RNA-binding domain, RBD	coord: 9..101 score: 3.09
None	No IPR available	PANTHER	PTHR21245	FAMILY NOT NAMED	coord: 8..145 score: 1.2