MELO3C005837T1 (mRNA) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C005837T1
Type	mRNA
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Putative RNA-binding 18
Location	chr9 : 23532965 .. 23533299 (-)
Sequence length	246

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAATTACCGCCTCAGGATTCAAACGGTTTTGTTGATGAGAAGTGTGAAAGCAAACTTTATATTGGCAATCTTGACCTCAGAATTACGGAGTAAGGAAAACTACTGTCCCAGCATTTGCAATGTATTTGTCTTCTAGTTTTCCCGCTTCTATACTAAAGTTTGAATCAATTTGTTTCAGAGCGGCCCTCATTAAACTCTTCTCTCCTTTTGGGAAGATAATATCTGAGGATTTCTTGTGGCACACCCGTGGGCCGAAGCGTGGAGAGCCACGAGGATTTGCCTTCATCGAGTACAGCTCCAAGGAGGTAAGTTGCTTGGTGTTTACCCCTTGA

mRNA sequence

ATGGAATTACCGCCTCAGGATTCAAACGGTTTTGTTGATGAGAAGTGTGAAAGCAAACTTTATATTGGCAATCTTGACCTCAGAATTACGGAAGCGGCCCTCATTAAACTCTTCTCTCCTTTTGGGAAGATAATATCTGAGGATTTCTTGTGGCACACCCGTGGGCCGAAGCGTGGAGAGCCACGAGGATTTGCCTTCATCGAGTACAGCTCCAAGGAGGTAAGTTGCTTGGTGTTTACCCCTTGA

Coding sequence (CDS)

ATGGAATTACCGCCTCAGGATTCAAACGGTTTTGTTGATGAGAAGTGTGAAAGCAAACTTTATATTGGCAATCTTGACCTCAGAATTACGGAAGCGGCCCTCATTAAACTCTTCTCTCCTTTTGGGAAGATAATATCTGAGGATTTCTTGTGGCACACCCGTGGGCCGAAGCGTGGAGAGCCACGAGGATTTGCCTTCATCGAGTACAGCTCCAAGGAGGTAAGTTGCTTGGTGTTTACCCCTTGA

Protein sequence

MELPPQDSNGFVDEKCESKLYIGNLDLRITEAALIKLFSPFGKIISEDFLWHTRGPKRGEPRGFAFIEYSSKEVSCLVFTP*

Homology

[Close]

BLAST of MELO3C005837T1 vs. Swiss-Prot
Match: RBM18_DANRE (Probable RNA-binding protein 18 OS=Danio rerio GN=rbm18 PE=2 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 7.0e-10
Identity = 27/55 (49.09%), Postives = 37/55 (67.27%), Query Frame = 1


Query: 19 KLYIGNLDLRITEAALIKLFSPFGKIISEDFLWHTRGPKRGEPRGFAFIEYSSKE 74
          +L+IGN+D +ITE  L+KL   FGK+   DFL+H  GP  G+PRG+ F+ + +KE
Sbjct: 24 RLWIGNIDPKITEYHLVKLLEKFGKVKQFDFLFHKSGPLEGQPRGYCFVNFHTKE 78

[Close]

BLAST of MELO3C005837T1 vs. Swiss-Prot
Match: RBM18_XENLA (Probable RNA-binding protein 18 OS=Xenopus laevis GN=rbm18 PE=2 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 3.5e-09
Identity = 26/54 (48.15%), Postives = 36/54 (66.67%), Query Frame = 1


Query: 19 KLYIGNLDLRITEAALIKLFSPFGKIISEDFLWHTRGPKRGEPRGFAFIEYSSK 73
          +L+IGN+D +ITE  L+KL   FGK+   DFL+H  GP  G+PRG+ F+ + +K
Sbjct: 26 RLWIGNVDPKITEYHLLKLLQKFGKVKQFDFLFHKSGPLEGQPRGYCFVNFETK 79

[Close]

BLAST of MELO3C005837T1 vs. Swiss-Prot
Match: RBM18_MOUSE (Probable RNA-binding protein 18 OS=Mus musculus GN=Rbm18 PE=2 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 7.8e-09
Identity = 26/55 (47.27%), Postives = 36/55 (65.45%), Query Frame = 1


Query: 19 KLYIGNLDLRITEAALIKLFSPFGKIISEDFLWHTRGPKRGEPRGFAFIEYSSKE 74
          +L+IGNLD +ITE  L+KL   FGK+   DFL+H  G   G+PRG+ F+ + +K+
Sbjct: 26 RLWIGNLDPKITEYHLLKLLQKFGKVKQFDFLFHKSGALEGQPRGYCFVNFETKQ 80

[Close]

BLAST of MELO3C005837T1 vs. Swiss-Prot
Match: RBM18_PONAB (Probable RNA-binding protein 18 OS=Pongo abelii GN=RBM18 PE=2 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 7.8e-09
Identity = 26/55 (47.27%), Postives = 36/55 (65.45%), Query Frame = 1


Query: 19 KLYIGNLDLRITEAALIKLFSPFGKIISEDFLWHTRGPKRGEPRGFAFIEYSSKE 74
          +L+IGNLD +ITE  L+KL   FGK+   DFL+H  G   G+PRG+ F+ + +K+
Sbjct: 26 RLWIGNLDPKITEYHLLKLLQKFGKVKQFDFLFHKSGALEGQPRGYCFVNFETKQ 80

[Close]

BLAST of MELO3C005837T1 vs. Swiss-Prot
Match: RBM18_HUMAN (Probable RNA-binding protein 18 OS=Homo sapiens GN=RBM18 PE=2 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 7.8e-09
Identity = 26/55 (47.27%), Postives = 36/55 (65.45%), Query Frame = 1


Query: 19 KLYIGNLDLRITEAALIKLFSPFGKIISEDFLWHTRGPKRGEPRGFAFIEYSSKE 74
          +L+IGNLD +ITE  L+KL   FGK+   DFL+H  G   G+PRG+ F+ + +K+
Sbjct: 26 RLWIGNLDPKITEYHLLKLLQKFGKVKQFDFLFHKSGALEGQPRGYCFVNFETKQ 80

[Close]

BLAST of MELO3C005837T1 vs. TrEMBL
Match: A0A0A0KJM9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G140500 PE=4 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 3.9e-31
Identity = 67/68 (98.53%), Postives = 68/68 (100.00%), Query Frame = 1


Query: 6   QDSNGFVDEKCESKLYIGNLDLRITEAALIKLFSPFGKIISEDFLWHTRGPKRGEPRGFA 65
           +DSNGFVDEKCESKLYIGNLDLRITEAALIKLFSPFGKIISEDFLWHTRGPKRGEPRGFA
Sbjct: 33  EDSNGFVDEKCESKLYIGNLDLRITEAALIKLFSPFGKIISEDFLWHTRGPKRGEPRGFA 92

Query: 66  FIEYSSKE 74
           FIEYSSKE
Sbjct: 93  FIEYSSKE 100

[Close]

BLAST of MELO3C005837T1 vs. TrEMBL
Match: B9RIU0_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1582780 PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 3.1e-28
Identity = 58/68 (85.29%), Postives = 67/68 (98.53%), Query Frame = 1


Query: 6  QDSNGFVDEKCESKLYIGNLDLRITEAALIKLFSPFGKIISEDFLWHTRGPKRGEPRGFA 65
          QDSNGF+DEK ESKLY+GNLDLRITEAALIK+FSP+GKI+SEDFLWHTRGPKRGEPRGFA
Sbjct: 2  QDSNGFIDEKAESKLYVGNLDLRITEAALIKMFSPYGKIVSEDFLWHTRGPKRGEPRGFA 61

Query: 66 FIEYSSKE 74
          F+++S+KE
Sbjct: 62 FVQFSTKE 69

[Close]

BLAST of MELO3C005837T1 vs. TrEMBL
Match: A0A067JEG3_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26067 PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 5.8e-27
Identity = 57/67 (85.07%), Postives = 65/67 (97.01%), Query Frame = 1


Query: 7  DSNGFVDEKCESKLYIGNLDLRITEAALIKLFSPFGKIISEDFLWHTRGPKRGEPRGFAF 66
          D NGF+DEK ES+LYIGNLDLRITEAALIK+FSP+GKI+SEDFLWHTRGPKRGEPRGFAF
Sbjct: 2  DPNGFIDEKAESRLYIGNLDLRITEAALIKMFSPYGKIVSEDFLWHTRGPKRGEPRGFAF 61

Query: 67 IEYSSKE 74
          I++S+KE
Sbjct: 62 IQFSTKE 68

[Close]

BLAST of MELO3C005837T1 vs. TrEMBL
Match: A0A058ZYN7_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_K00291 PE=4 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 1.7e-26
Identity = 59/67 (88.06%), Postives = 63/67 (94.03%), Query Frame = 1


Query: 7  DSNGFVDEKCESKLYIGNLDLRITEAALIKLFSPFGKIISEDFLWHTRGPKRGEPRGFAF 66
          D N F+DEK ES+LYIGNLDLRITEA LIK+FSPFGKIISEDFLWHTRGPKRGEPRGFAF
Sbjct: 2  DPNRFMDEKSESRLYIGNLDLRITEATLIKMFSPFGKIISEDFLWHTRGPKRGEPRGFAF 61

Query: 67 IEYSSKE 74
          I+YSSKE
Sbjct: 62 IQYSSKE 68

[Close]

BLAST of MELO3C005837T1 vs. TrEMBL
Match: I3SJ40_MEDTR (Uncharacterized protein OS=Medicago truncatula PE=2 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 4.9e-26
Identity = 55/71 (77.46%), Postives = 66/71 (92.96%), Query Frame = 1


Query: 7  DSNGFVDEKCESKLYIGNLDLRITEAALIKLFSPFGKIISEDFLWHTRGPKRGEPRGFAF 66
          D NG VD+KCE++LY+GNLDLRITEA L+K+FSP+GKI+SEDFLWHTRGPKRGEPRGFAF
Sbjct: 2  DLNGSVDDKCENRLYVGNLDLRITEATLLKMFSPYGKIMSEDFLWHTRGPKRGEPRGFAF 61

Query: 67 IEYSSKEVSCL 78
          I+YS+KE + L
Sbjct: 62 IQYSTKEEAIL 72

[Close]

BLAST of MELO3C005837T1 vs. TAIR10
Match: AT5G03580.1 (AT5G03580.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 48.9 bits (115), Expect = 1.7e-06
Identity = 27/60 (45.00%), Postives = 35/60 (58.33%), Query Frame = 1


Query: 18 SKLYIGNLDLRITEAALIKLFSPFGKII----SEDFLWHTRGPKRGEPRGFAFIEYSSKE 74
          + LYI NLD +++E  L  +FS FGK+I    ++DF        RGE RGFAFIE+ S +
Sbjct: 17 TSLYIANLDAQVSEEMLFLMFSDFGKVIRSVLAKDF--------RGESRGFAFIEFESAD 68

[Close]

BLAST of MELO3C005837T1 vs. NCBI nr
Match: gi|700194748|gb|KGN49925.1| (hypothetical protein Csa_5G140500 [Cucumis sativus])

HSP 1 Score: 141.7 bits (356), Expect = 5.5e-31
Identity = 67/68 (98.53%), Postives = 68/68 (100.00%), Query Frame = 1


Query: 6   QDSNGFVDEKCESKLYIGNLDLRITEAALIKLFSPFGKIISEDFLWHTRGPKRGEPRGFA 65
           +DSNGFVDEKCESKLYIGNLDLRITEAALIKLFSPFGKIISEDFLWHTRGPKRGEPRGFA
Sbjct: 33  EDSNGFVDEKCESKLYIGNLDLRITEAALIKLFSPFGKIISEDFLWHTRGPKRGEPRGFA 92

Query: 66  FIEYSSKE 74
           FIEYSSKE
Sbjct: 93  FIEYSSKE 100

[Close]

BLAST of MELO3C005837T1 vs. NCBI nr
Match: gi|778699047|ref|XP_011654647.1| (PREDICTED: probable RNA-binding protein 18 [Cucumis sativus])

HSP 1 Score: 141.0 bits (354), Expect = 9.5e-31
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 1


Query: 7  DSNGFVDEKCESKLYIGNLDLRITEAALIKLFSPFGKIISEDFLWHTRGPKRGEPRGFAF 66
          DSNGFVDEKCESKLYIGNLDLRITEAALIKLFSPFGKIISEDFLWHTRGPKRGEPRGFAF
Sbjct: 2  DSNGFVDEKCESKLYIGNLDLRITEAALIKLFSPFGKIISEDFLWHTRGPKRGEPRGFAF 61

Query: 67 IEYSSKE 74
          IEYSSKE
Sbjct: 62 IEYSSKE 68

[Close]

BLAST of MELO3C005837T1 vs. NCBI nr
Match: gi|659074295|ref|XP_008437528.1| (PREDICTED: probable RNA-binding protein 18 [Cucumis melo])

HSP 1 Score: 141.0 bits (354), Expect = 9.5e-31
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 1


Query: 7  DSNGFVDEKCESKLYIGNLDLRITEAALIKLFSPFGKIISEDFLWHTRGPKRGEPRGFAF 66
          DSNGFVDEKCESKLYIGNLDLRITEAALIKLFSPFGKIISEDFLWHTRGPKRGEPRGFAF
Sbjct: 2  DSNGFVDEKCESKLYIGNLDLRITEAALIKLFSPFGKIISEDFLWHTRGPKRGEPRGFAF 61

Query: 67 IEYSSKE 74
          IEYSSKE
Sbjct: 62 IEYSSKE 68

[Close]

BLAST of MELO3C005837T1 vs. NCBI nr
Match: gi|823182534|ref|XP_012488544.1| (PREDICTED: probable RNA-binding protein 18 isoform X1 [Gossypium raimondii])

HSP 1 Score: 134.0 bits (336), Expect = 1.2e-28
Identity = 61/74 (82.43%), Postives = 68/74 (91.89%), Query Frame = 1


Query: 6  QDSNGFVDEKCESKLYIGNLDLRITEAALIKLFSPFGKIISEDFLWHTRGPKRGEPRGFA 65
          QD   F DE+ ES+LY+GNLDLRITEAALIK+FSP+GKIISEDFLWHTRGPKRGEPRGFA
Sbjct: 5  QDPRSFADERSESRLYVGNLDLRITEAALIKMFSPYGKIISEDFLWHTRGPKRGEPRGFA 64

Query: 66 FIEYSSKEVSCLVF 80
          FI+YS+KEVSCL F
Sbjct: 65 FIQYSTKEVSCLFF 78

[Close]

BLAST of MELO3C005837T1 vs. NCBI nr
Match: gi|223547567|gb|EEF49062.1| (conserved hypothetical protein [Ricinus communis])

HSP 1 Score: 132.1 bits (331), Expect = 4.4e-28
Identity = 58/68 (85.29%), Postives = 67/68 (98.53%), Query Frame = 1


Query: 6  QDSNGFVDEKCESKLYIGNLDLRITEAALIKLFSPFGKIISEDFLWHTRGPKRGEPRGFA 65
          QDSNGF+DEK ESKLY+GNLDLRITEAALIK+FSP+GKI+SEDFLWHTRGPKRGEPRGFA
Sbjct: 2  QDSNGFIDEKAESKLYVGNLDLRITEAALIKMFSPYGKIVSEDFLWHTRGPKRGEPRGFA 61

Query: 66 FIEYSSKE 74
          F+++S+KE
Sbjct: 62 FVQFSTKE 69

The following BLAST results are available for this feature:

BLAST of MELO3C005837T1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RBM18_DANRE	7.0e-10	49.09	Probable RNA-binding protein 18 OS=Danio rerio GN=rbm18 PE=2 SV=1	[more]
RBM18_XENLA	3.5e-09	48.15	Probable RNA-binding protein 18 OS=Xenopus laevis GN=rbm18 PE=2 SV=1	[more]
RBM18_MOUSE	7.8e-09	47.27	Probable RNA-binding protein 18 OS=Mus musculus GN=Rbm18 PE=2 SV=1	[more]
RBM18_PONAB	7.8e-09	47.27	Probable RNA-binding protein 18 OS=Pongo abelii GN=RBM18 PE=2 SV=1	[more]
RBM18_HUMAN	7.8e-09	47.27	Probable RNA-binding protein 18 OS=Homo sapiens GN=RBM18 PE=2 SV=1	[more]

BLAST of MELO3C005837T1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KJM9_CUCSA	3.9e-31	98.53	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G140500 PE=4 SV=1	[more]
B9RIU0_RICCO	3.1e-28	85.29	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1582780 PE=4 SV=1	[more]
A0A067JEG3_JATCU	5.8e-27	85.07	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26067 PE=4 SV=1	[more]
A0A058ZYN7_EUCGR	1.7e-26	88.06	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_K00291 PE=4 SV=1	[more]
I3SJ40_MEDTR	4.9e-26	77.46	Uncharacterized protein OS=Medicago truncatula PE=2 SV=1	[more]

BLAST of MELO3C005837T1 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G03580.1	1.7e-06	45.00	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

BLAST of MELO3C005837T1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700194748\|gb\|KGN49925.1\|	5.5e-31	98.53	hypothetical protein Csa_5G140500 [Cucumis sativus]	[more]
gi\|778699047\|ref\|XP_011654647.1\|	9.5e-31	100.00	PREDICTED: probable RNA-binding protein 18 [Cucumis sativus]	[more]
gi\|659074295\|ref\|XP_008437528.1\|	9.5e-31	100.00	PREDICTED: probable RNA-binding protein 18 [Cucumis melo]	[more]
gi\|823182534\|ref\|XP_012488544.1\|	1.2e-28	82.43	PREDICTED: probable RNA-binding protein 18 isoform X1 [Gossypium raimondii]	[more]
gi\|223547567\|gb\|EEF49062.1\|	4.4e-28	85.29	conserved hypothetical protein [Ricinus communis]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding
GO:0000166	nucleotide binding

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0000166	nucleotide binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C005837	MELO3C005837	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MELO3C005837T1	MELO3C005837T1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C005837T1.cds2	MELO3C005837T1.cds2	CDS
MELO3C005837T1.cds1	MELO3C005837T1.cds1	CDS

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 20..73 score: 1.6
IPR000504	RNA recognition motif domain	PROFILE	PS50102	RRM	coord: 18..73 score: 12
IPR012677	Nucleotide-binding alpha-beta plait domain	GENE3D	G3DSA:3.30.70.330		coord: 6..73 score: 1.6
IPR012677	Nucleotide-binding alpha-beta plait domain	unknown	SSF54928	RNA-binding domain, RBD	coord: 4..73 score: 6.18
None	No IPR available	PANTHER	PTHR21245	FAMILY NOT NAMED	coord: 13..73 score: 1.2
None	No IPR available	PANTHER	PTHR21245:SF2	RNA-BINDING PROTEIN 18-RELATED	coord: 13..73 score: 1.2