MELO3C005702 (gene) Melon (DHL92) v3.5.1

NameMELO3C005702
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionNuclear transport factor 2 family protein, putative
Locationchr9 : 22478643 .. 22479217 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GCGGTGAACTAATAATAATAATAGTAATGTCCCTTATTACGAGTCCTCAAGCTGTCAACTTTGGGGGCTCCCCATCATTTAGAAGATTTTCTTATACATTGTTCTTGAATAAAAGAACTTCATGTATATTTCAACAAAAGAAGAACTACGGCAACTACAACAAGAGAAAAACAAACGTCAGACTAGTCTCATCATGTTTAATGGATGATTCCTTTTCCTACTCAAGTTCAAGTTCAAATTCTCCAGGAGAAATGATTGAGATGTTCTACAAATGCATCAATGAAAAGAACTTAAAGAAAATGAACACTTACATCTCAGAAGACTGCCTCATTGAAGACTCCTTGTTCATTGAAAAATTTAAAGGGAAGAAGGTAAATGAGCTATATTAAACATATCTGTATTCCTGTCCTCATTCATAGAACATGTATGTCCATGGAACCTACCTGCAGGCAGCTATGAGTTTCATCGAAAAACTAACTGAAAGCATGGGTCCAGATGTGAAGTTTAGAATTCGTACAGTATACGAAAGACGCCCTTCCATGGCAGGAGCAATCTGGCATTTGGGTAGTTCATAG

mRNA sequence

GCGGTGAACTAATAATAATAATAGTAATGTCCCTTATTACGAGTCCTCAAGCTGTCAACTTTGGGGGCTCCCCATCATTTAGAAGATTTTCTTATACATTGTTCTTGAATAAAAGAACTTCATGTATATTTCAACAAAAGAAGAACTACGGCAACTACAACAAGAGAAAAACAAACGTCAGACTAGTCTCATCATGTTTAATGGATGATTCCTTTTCCTACTCAAGTTCAAGTTCAAATTCTCCAGGAGAAATGATTGAGATGTTCTACAAATGCATCAATGAAAAGAACTTAAAGAAAATGAACACTTACATCTCAGAAGACTGCCTCATTGAAGACTCCTTGTTCATTGAAAAATTTAAAGGGAAGAAGGCAGCTATGAGTTTCATCGAAAAACTAACTGAAAGCATGGGTCCAGATGTGAAGTTTAGAATTCGTACAGTATACGAAAGACGCCCTTCCATGGCAGGAGCAATCTGGCATTTGGGTAGTTCATAG

Coding sequence (CDS)

ATGTCCCTTATTACGAGTCCTCAAGCTGTCAACTTTGGGGGCTCCCCATCATTTAGAAGATTTTCTTATACATTGTTCTTGAATAAAAGAACTTCATGTATATTTCAACAAAAGAAGAACTACGGCAACTACAACAAGAGAAAAACAAACGTCAGACTAGTCTCATCATGTTTAATGGATGATTCCTTTTCCTACTCAAGTTCAAGTTCAAATTCTCCAGGAGAAATGATTGAGATGTTCTACAAATGCATCAATGAAAAGAACTTAAAGAAAATGAACACTTACATCTCAGAAGACTGCCTCATTGAAGACTCCTTGTTCATTGAAAAATTTAAAGGGAAGAAGGCAGCTATGAGTTTCATCGAAAAACTAACTGAAAGCATGGGTCCAGATGTGAAGTTTAGAATTCGTACAGTATACGAAAGACGCCCTTCCATGGCAGGAGCAATCTGGCATTTGGGTAGTTCATAG

Protein sequence

MSLITSPQAVNFGGSPSFRRFSYTLFLNKRTSCIFQQKKNYGNYNKRKTNVRLVSSCLMDDSFSYSSSSSNSPGEMIEMFYKCINEKNLKKMNTYISEDCLIEDSLFIEKFKGKKAAMSFIEKLTESMGPDVKFRIRTVYERRPSMAGAIWHLGSS*
BLAST of MELO3C005702 vs. TrEMBL
Match: A0A0A0KMI4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G152840 PE=4 SV=1)

HSP 1 Score: 275.8 bits (704), Expect = 3.3e-71
Identity = 138/153 (90.20%), Postives = 140/153 (91.50%), Query Frame = 1

Query: 1   MSLITSPQAVNFGGSPSFRRFSYTLFLNKRTSCIFQQKKNYGNYNKRKTNVRLVSSCLMD 60
           MSLITSPQAVNFGGS SFRRFS   FLNKRTSCIFQQKKNYGNYNKRKTN  LV SCLMD
Sbjct: 1   MSLITSPQAVNFGGSQSFRRFSSYTFLNKRTSCIFQQKKNYGNYNKRKTNNTLVLSCLMD 60

Query: 61  DSFSYSSSSSNSPGEMIEMFYKCINEKNLKKMNTYISEDCLIEDSLFIEKFKGKKAAMSF 120
           DSFS   SSSNSPGEMIE FYKCINEKNLK+M+TYISEDCLIEDSLFIEKFKGKKAAMSF
Sbjct: 61  DSFSCPGSSSNSPGEMIERFYKCINEKNLKEMSTYISEDCLIEDSLFIEKFKGKKAAMSF 120

Query: 121 IEKLTESMGPDVKFRIRTVYERRPSMAGAIWHL 154
           IEKLTESMGPDVKFRIR VYER PSMAGAIWHL
Sbjct: 121 IEKLTESMGPDVKFRIRKVYERHPSMAGAIWHL 153

BLAST of MELO3C005702 vs. TrEMBL
Match: A0A061G605_THECC (Nuclear transport factor 2 family protein, putative OS=Theobroma cacao GN=TCM_016322 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 2.3e-16
Identity = 55/120 (45.83%), Postives = 66/120 (55.00%), Query Frame = 1

Query: 34  IFQQKKNYGNYNKRKTNVRLVSSCLMDDSFSYSSSSSNSPGEMIEMFYKCINEKNLKKMN 93
           I +Q+KN      +KTN R VSS +  ++ S       S  + I+ FY CINEKNLKK+ 
Sbjct: 52  IKRQEKN------KKTNNRGVSSIMSSNNDSDLIFGPPSASDTIKHFYMCINEKNLKKLG 111

Query: 94  TYISEDCLIEDSLFIEKFKGKKAAMSFIEKLTESMGPDVKFRIRTVYERRPSMAGAIWHL 153
            YISEDC IED  F   F GKK  M F   LT  MG +VKF I  + E     AG  WHL
Sbjct: 112 DYISEDCYIEDCSFFNPFNGKKEVMHFFNLLTRGMGQNVKFVIEHICEGDGFTAGVNWHL 165

BLAST of MELO3C005702 vs. TrEMBL
Match: A0A022RJA0_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a012639mg PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 1.5e-15
Identity = 48/117 (41.03%), Postives = 65/117 (55.56%), Query Frame = 1

Query: 37  QKKNYGNYNKRKTNVRLVSSCLMDDSFSYSSSSSNSPGEMIEMFYKCINEKNLKKMNTYI 96
           Q KN   Y KR    +      +      SSSSS SP   +  FY  IN+KNLKK+++ I
Sbjct: 17  QSKNEIKYTKRVVERKPTKLFAIPRRNYISSSSSPSPARTVMQFYSAINDKNLKKLDSLI 76

Query: 97  SEDCLIEDSLFIEKFKGKKAAMSFIEKLTESMGPDVKFRIRTVYERRPSMAGAIWHL 154
           +EDCL ED  F + F+GKK  + F+E+LT  MG ++KF +  + E     AG  WHL
Sbjct: 77  AEDCLFEDYSFPKPFRGKKEVLRFLEQLTTCMGHNMKFNVDHICEGNDYTAGVNWHL 133

BLAST of MELO3C005702 vs. TrEMBL
Match: A0A067G9G6_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g023448mg PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 9.7e-15
Identity = 54/159 (33.96%), Postives = 75/159 (47.17%), Query Frame = 1

Query: 9   AVNFGGSPSFRRFSYTLF---------LNKRTSCIFQQKKNYGNYNKRKTNVRLVSSCLM 68
           ++NF G    +R  +            L  + SC  Q  +N         ++R ++ C  
Sbjct: 4   SINFSGQAQTQRLCFRALGGNGIVLNSLPSKISC--QLMQNTSKIEHHGISIRSLAKCKP 63

Query: 69  DDSFSYSSSSSN-----SPGEMIEMFYKCINEKNLKKMNTYISEDCLIEDSLFIEKFKGK 128
                 +S  S      S    I  FY CINEKNL+++ TYIS+DC  ED  F + F+GK
Sbjct: 64  STLVPSASDDSIEIVPFSASNTIREFYACINEKNLERLETYISDDCCFEDCSFPKPFQGK 123

Query: 129 KAAMSFIEKLTESMGPDVKFRIRTVYERRPSMAGAIWHL 154
           K  M F+E+L  SMG +VKF +  V E     AG  WHL
Sbjct: 124 KEVMQFLEQLVTSMGQNVKFSVEQVCEGDEFTAGINWHL 160

BLAST of MELO3C005702 vs. TrEMBL
Match: M5WDG8_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa015862mg PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 2.2e-14
Identity = 53/129 (41.09%), Postives = 71/129 (55.04%), Query Frame = 1

Query: 28  NKRTS---CIFQQKKNYGNYNKRKTNVRLVSSCLMDDSFSYSSSSSNSPGEMIEMFYKCI 87
           NKR +   CI+ ++K     NK+  + RL          S    SS SP + I+ FYKCI
Sbjct: 40  NKRDALQHCIYVKRKAE---NKQLNDHRLFPVMAAAQRSSGIYPSSPSPSDTIKKFYKCI 99

Query: 88  NEKNLKKMNTYISEDCLIEDSLFIEKFKGKKAAMSFIEKLTESMGPDVKFRIRTVYERRP 147
           NEKNLK++  YISE C IE+  F    +GKK  M+F E+L   MG +VKF I+ V E   
Sbjct: 100 NEKNLKQLGDYISEGCYIEECSFNTPLQGKKEVMNFFEQLITGMGQNVKFCIQHVCEGDE 159

Query: 148 SMAGAIWHL 154
            +  A WH+
Sbjct: 160 LIGAANWHM 165

BLAST of MELO3C005702 vs. TAIR10
Match: AT5G41470.1 (AT5G41470.1 Nuclear transport factor 2 (NTF2) family protein)

HSP 1 Score: 73.2 bits (178), Expect = 1.6e-13
Identity = 42/109 (38.53%), Postives = 58/109 (53.21%), Query Frame = 1

Query: 45  NKRKTNVRLVSSCLMDDSFSYSSSSSNSPGEMIEMFYKCINEKNLKKMNTYISEDCLIED 104
           NK  +   +V SCL   +   S  +  S  + +  FY  INEKN  ++++ IS DC I+D
Sbjct: 50  NKYASRRNIVVSCLDRPN---SRPNQISGYDAVMKFYSSINEKNQDQLSSCISSDCFIDD 109

Query: 105 SLFIEKFKGKKAAMSFIEKLTESMGPDVKFRIRTVYERRPSMAGAIWHL 154
             F + F+GK+ AM F E+L +SMG +VKF +  V E     A   WHL
Sbjct: 110 FSFPKPFRGKQEAMEFFEELVKSMGQNVKFCVENVCEGDGHSAAVNWHL 155

BLAST of MELO3C005702 vs. NCBI nr
Match: gi|659073917|ref|XP_008437322.1| (PREDICTED: uncharacterized protein LOC103482777 isoform X1 [Cucumis melo])

HSP 1 Score: 311.2 bits (796), Expect = 1.0e-81
Identity = 153/153 (100.00%), Postives = 153/153 (100.00%), Query Frame = 1

Query: 1   MSLITSPQAVNFGGSPSFRRFSYTLFLNKRTSCIFQQKKNYGNYNKRKTNVRLVSSCLMD 60
           MSLITSPQAVNFGGSPSFRRFSYTLFLNKRTSCIFQQKKNYGNYNKRKTNVRLVSSCLMD
Sbjct: 1   MSLITSPQAVNFGGSPSFRRFSYTLFLNKRTSCIFQQKKNYGNYNKRKTNVRLVSSCLMD 60

Query: 61  DSFSYSSSSSNSPGEMIEMFYKCINEKNLKKMNTYISEDCLIEDSLFIEKFKGKKAAMSF 120
           DSFSYSSSSSNSPGEMIEMFYKCINEKNLKKMNTYISEDCLIEDSLFIEKFKGKKAAMSF
Sbjct: 61  DSFSYSSSSSNSPGEMIEMFYKCINEKNLKKMNTYISEDCLIEDSLFIEKFKGKKAAMSF 120

Query: 121 IEKLTESMGPDVKFRIRTVYERRPSMAGAIWHL 154
           IEKLTESMGPDVKFRIRTVYERRPSMAGAIWHL
Sbjct: 121 IEKLTESMGPDVKFRIRTVYERRPSMAGAIWHL 153

BLAST of MELO3C005702 vs. NCBI nr
Match: gi|700194892|gb|KGN50069.1| (hypothetical protein Csa_5G152840 [Cucumis sativus])

HSP 1 Score: 275.8 bits (704), Expect = 4.7e-71
Identity = 138/153 (90.20%), Postives = 140/153 (91.50%), Query Frame = 1

Query: 1   MSLITSPQAVNFGGSPSFRRFSYTLFLNKRTSCIFQQKKNYGNYNKRKTNVRLVSSCLMD 60
           MSLITSPQAVNFGGS SFRRFS   FLNKRTSCIFQQKKNYGNYNKRKTN  LV SCLMD
Sbjct: 1   MSLITSPQAVNFGGSQSFRRFSSYTFLNKRTSCIFQQKKNYGNYNKRKTNNTLVLSCLMD 60

Query: 61  DSFSYSSSSSNSPGEMIEMFYKCINEKNLKKMNTYISEDCLIEDSLFIEKFKGKKAAMSF 120
           DSFS   SSSNSPGEMIE FYKCINEKNLK+M+TYISEDCLIEDSLFIEKFKGKKAAMSF
Sbjct: 61  DSFSCPGSSSNSPGEMIERFYKCINEKNLKEMSTYISEDCLIEDSLFIEKFKGKKAAMSF 120

Query: 121 IEKLTESMGPDVKFRIRTVYERRPSMAGAIWHL 154
           IEKLTESMGPDVKFRIR VYER PSMAGAIWHL
Sbjct: 121 IEKLTESMGPDVKFRIRKVYERHPSMAGAIWHL 153

BLAST of MELO3C005702 vs. NCBI nr
Match: gi|778699525|ref|XP_011654728.1| (PREDICTED: uncharacterized protein LOC101214565 [Cucumis sativus])

HSP 1 Score: 177.6 bits (449), Expect = 1.7e-41
Identity = 87/95 (91.58%), Postives = 89/95 (93.68%), Query Frame = 1

Query: 59  MDDSFSYSSSSSNSPGEMIEMFYKCINEKNLKKMNTYISEDCLIEDSLFIEKFKGKKAAM 118
           MDDSFS   SSSNSPGEMIE FYKCINEKNLK+M+TYISEDCLIEDSLFIEKFKGKKAAM
Sbjct: 1   MDDSFSCPGSSSNSPGEMIERFYKCINEKNLKEMSTYISEDCLIEDSLFIEKFKGKKAAM 60

Query: 119 SFIEKLTESMGPDVKFRIRTVYERRPSMAGAIWHL 154
           SFIEKLTESMGPDVKFRIR VYER PSMAGAIWHL
Sbjct: 61  SFIEKLTESMGPDVKFRIRKVYERHPSMAGAIWHL 95

BLAST of MELO3C005702 vs. NCBI nr
Match: gi|659073919|ref|XP_008437324.1| (PREDICTED: uncharacterized protein LOC103482777 isoform X2 [Cucumis melo])

HSP 1 Score: 172.2 bits (435), Expect = 7.3e-40
Identity = 84/95 (88.42%), Postives = 89/95 (93.68%), Query Frame = 1

Query: 59  MDDSFSYSSSSSNSPGEMIEMFYKCINEKNLKKMNTYISEDCLIEDSLFIEKFKGKKAAM 118
           MDDSFS S SSSNSPGEMIE+FYKCINEKNLK+M+TYISEDCLIED+LF EKFKGKKAAM
Sbjct: 1   MDDSFSCSGSSSNSPGEMIEIFYKCINEKNLKEMSTYISEDCLIEDTLFSEKFKGKKAAM 60

Query: 119 SFIEKLTESMGPDVKFRIRTVYERRPSMAGAIWHL 154
           SFIEKLTESMGPD+KFRIR VYERRPS A AIWHL
Sbjct: 61  SFIEKLTESMGPDMKFRIRKVYERRPSTARAIWHL 95

BLAST of MELO3C005702 vs. NCBI nr
Match: gi|764580879|ref|XP_011463917.1| (PREDICTED: uncharacterized protein LOC105351429 [Fragaria vesca subsp. vesca])

HSP 1 Score: 94.0 bits (232), Expect = 2.5e-16
Identity = 56/135 (41.48%), Postives = 74/135 (54.81%), Query Frame = 1

Query: 29  KRTSCIFQQK----KNYGNYNKRKT-----NVRLVSSCLMDDSFSYSSSSSNSPGEMIEM 88
           KRT    QQ     K +  Y K +      ++R +   +     S  SS S SP E I  
Sbjct: 82  KRTCKFVQQSRADAKKHSTYVKNQAENKLPSIRALLPIMAAKGNSTFSSGSLSPSETIND 141

Query: 89  FYKCINEKNLKKMNTYISEDCLIEDSLFIEKFKGKKAAMSFIEKLTESMGPDVKFRIRTV 148
           FYKC+NEKNLK+++ YIS DC IE+  F    +GKK  M F E+LTE+MG ++KF IR V
Sbjct: 142 FYKCVNEKNLKQLSHYISTDCYIEECSFSTPLQGKKVIMKFFEELTEAMGKNIKFSIRIV 201

Query: 149 YERRPSM-AGAIWHL 154
            E    + A A WH+
Sbjct: 202 CEGNDQLTAAANWHM 216

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0KMI4_CUCSA3.3e-7190.20Uncharacterized protein OS=Cucumis sativus GN=Csa_5G152840 PE=4 SV=1[more]
A0A061G605_THECC2.3e-1645.83Nuclear transport factor 2 family protein, putative OS=Theobroma cacao GN=TCM_01... [more]
A0A022RJA0_ERYGU1.5e-1541.03Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a012639mg PE=4 SV=1[more]
A0A067G9G6_CITSI9.7e-1533.96Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g023448mg PE=4 SV=1[more]
M5WDG8_PRUPE2.2e-1441.09Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa015862mg PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT5G41470.11.6e-1338.53 Nuclear transport factor 2 (NTF2) family protein[more]
Match NameE-valueIdentityDescription
gi|659073917|ref|XP_008437322.1|1.0e-81100.00PREDICTED: uncharacterized protein LOC103482777 isoform X1 [Cucumis melo][more]
gi|700194892|gb|KGN50069.1|4.7e-7190.20hypothetical protein Csa_5G152840 [Cucumis sativus][more]
gi|778699525|ref|XP_011654728.1|1.7e-4191.58PREDICTED: uncharacterized protein LOC101214565 [Cucumis sativus][more]
gi|659073919|ref|XP_008437324.1|7.3e-4088.42PREDICTED: uncharacterized protein LOC103482777 isoform X2 [Cucumis melo][more]
gi|764580879|ref|XP_011463917.1|2.5e-1641.48PREDICTED: uncharacterized protein LOC105351429 [Fragaria vesca subsp. vesca][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
MU63828melon EST collection version 4.0transcribed_cluster

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C005702T1MELO3C005702T1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
MU63828MU63828transcribed_cluster


Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33698FAMILY NOT NAMEDcoord: 36..153
score: 4.0
NoneNo IPR availablePANTHERPTHR33698:SF1NUCLEAR TRANSPORT FACTOR 2 (NTF2) FAMILY PROTEINcoord: 36..153
score: 4.0

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C005702Cucurbita pepo (Zucchini)cpemeB647
MELO3C005702Bottle gourd (USVL1VR-Ls)lsimeB011
MELO3C005702Bottle gourd (USVL1VR-Ls)lsimeB339
MELO3C005702Cucumber (Gy14) v2cgybmeB144
MELO3C005702Cucumber (Gy14) v2cgybmeB228
MELO3C005702Cucumber (Gy14) v2cgybmeB362
MELO3C005702Silver-seed gourdcarmeB0903
MELO3C005702Cucumber (Chinese Long) v3cucmeB170
MELO3C005702Cucumber (Chinese Long) v3cucmeB267
MELO3C005702Cucumber (Chinese Long) v3cucmeB426
MELO3C005702Watermelon (97103) v2mewmbB028
MELO3C005702Watermelon (97103) v2mewmbB030
MELO3C005702Melon (DHL92) v3.5.1memeB010
MELO3C005702Melon (DHL92) v3.5.1memeB020
MELO3C005702Melon (DHL92) v3.5.1memeB021
MELO3C005702Cucumber (Gy14) v1cgymeB137
MELO3C005702Cucumber (Gy14) v1cgymeB218
MELO3C005702Cucurbita maxima (Rimu)cmameB284
MELO3C005702Cucurbita maxima (Rimu)cmameB312
MELO3C005702Cucurbita maxima (Rimu)cmameB530
MELO3C005702Cucurbita maxima (Rimu)cmameB638
MELO3C005702Cucurbita moschata (Rifu)cmomeB277
MELO3C005702Cucurbita moschata (Rifu)cmomeB305
MELO3C005702Cucurbita moschata (Rifu)cmomeB519
MELO3C005702Cucurbita moschata (Rifu)cmomeB628
MELO3C005702Cucurbita moschata (Rifu)cmomeB799
MELO3C005702Wild cucumber (PI 183967)cpimeB168
MELO3C005702Wild cucumber (PI 183967)cpimeB260
MELO3C005702Wild cucumber (PI 183967)cpimeB412
MELO3C005702Cucumber (Chinese Long) v2cumeB176
MELO3C005702Cucumber (Chinese Long) v2cumeB276
MELO3C005702Cucumber (Chinese Long) v2cumeB421
MELO3C005702Watermelon (Charleston Gray)mewcgB031
MELO3C005702Watermelon (Charleston Gray)mewcgB032
MELO3C005702Watermelon (97103) v1mewmB023