Carg16618 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg16618
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Nuclear transport factor 2 (NTF2) family protein
Location	Cucurbita_argyrosperma_scaffold_064 : 63036 .. 65460 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCCTTATTACGAGCCCTCCTCCTCAAGCTCTCACCTTGGGCTCCCAACCATTTAGAACATTTGCATATACATCCATCCCTAAGAGACCCTCATATTTGTTTCAACAAAAGAAGCTTAGGAAAACAAGCTACACATTAGCCACCGACGTTAAGCCCCGTTTCGTGTCGTCGTGCTTAAAGGACGGCTCGGTTTGTAGCTTAGATTCATGTTCAAATTCTCCATCAGAAATGGTTAAGAAATTGTACGAGTGCATCAATGAAAAGAAGTTGAAGGAGTTGAGTAGTTACATGTCAGAAGATTGCCTTATTGAGGACTCCTTGTTTGATGAAGCATTTATAGGGAAGGAGGTATTTTTGTGTTCTCATTCATAATACTATGAATGTAGAGAAGAAATCTGTTATTGATTGTCCATGGAACCTACTTGCAGGCTGCTCTCAAGTTCTTTAAAGAACTAACTCAAAGTATGGGTCCGGATGTGAAGTTTAGGTTTCGTAACGTCTATGAAAGTGGCGCTTCTCGGGCTGGAGTAACCTGGCATCTAGGTACTTCTATCTATCATTAGAGATGTCTATTTAGAATCCACGTTTAAATGGAGAATAGAAGAGAGAGTTGGGAGAGATTTTTTGACGTAAGTGAAACGGGCAGGGACGGAGATTACATTCTCGTCCCTGTTTTTGGCCTTGGCCTTACCTTGCCTGCGGTGGGGACAGGGACAGAGATTACATTCTCGTTCGTGTTTTTGGCTTTGGTCTTGCCTGTGGTGGGGGACAGGGACAGAGGTTACATTCTTGTCCCTATTCTTTGCCTCGGCCTTGCTCGTGATGAGGACAGGGATGAAGATTACATTTTCATCCTTGTTTTCGCGAGCAAGGACGGGGATTACATTCTCATCCCTGTTTTTGACCTCGGTCTCGCCCGTGGTGGAGGCAGGGATGGAGATTACATTCTCATCCTTGATTTTGGCCTCGGCCTCGCCTACGGTGGGGACAGGGACGGAGATTACATTCTCATCCCTGTTCTTGGTTTTGGCCTCGCCCACAGTGGGGATAGGGATGGAGATTACATTCTCATCCTTGTTTTTGGCATAGGCCTCGCCTGTAGTGGGGACAGAGACGGAGATTACACTATTGTCCCTGTTCTTGGCCTCGACCTTGCCCCCAGTGGGAACAGGGACGAAGATTTCATTCTCGTCCATGTTCTTGGCCTCGGCCTCGCTCTCGGTGGAGACAGGGACGGAGATTACACTATTGTCCCTGTTCTTGGCCTCGACCTTGCCCCCTAGTGGGAACAGGGACAAAGATTTCATTCTCGTCCATGTTCTTGGCCTCGGCCTCGCTCGCAGTGGAGACAGGGACGGAGATTACATTCTCGTCCCTGTTTTTGGCCTTGGCCTCGCCTGTAGTGGGGACAGGGGCGGAGATTACATTCTTGTCCCTATTTTTTTCCTCGGCCTCACCCGCGGTGAAGACAAAGATGAAAATTATATTCTCGTCTCCATGCTTGCCCTTAGCCTCACTCGTGTGGGGACAGGGACAGAGGTTACATTCTCCTCCTTGTTCTTGGCCTCGACCTCACCTGCAATGGGGACAGGGACAAAAATTACATTCTTATCCCTGTTCTTGGCCTCCACCTCGTCTGCAATGGGGACTAGGACGAAGATTACATTCTCGTCTCTGTTCTTAGCCTCGGTCTCACCCACAATGGGGACAGGGACAAGGACAAGGACGTGAAGACTTTCCTATTCCCACCTCACCTATGAGCATCTCTACTACCATCATCCCTCCAACTCTTACCATTCTAATAGATCAACAAACTTGGTCATCCTTGAACAGTGTGGAAGAACACAAAGATCCCCTTCACCAAAGGTTGCACCTTCATACACATCAACAACGAACAAAGAACCATACAGTAAACCAACCAACACACAAACTCAATACCTATCTCAACCAATTACCCGCTATCTTACATGCAACTCTCTTGCAGGAAGGCACAAATCATAATAGAACCACAAGTAAAAGCGGGGCATCTCATCTTGGTGAGTACACACAACTCATAACTCCCACCAATTTCAACACATAAAATGAGTATAATCCATACAAATTGTGTACACAAATCATCAGGGTATGATGAAGCTGGTAACCTCCTTGCTTGCTCAGTATCCAGCAATTCATAAATGTAAGTCATTTTTGATACCTTAAGCCATAGAACTTGATGAACAAACATGACATTATGTGTCTTGCAGGGGTGATGAAACTTTCCCAGCAGCGTTGGGTAAGGTGGGTGGCCAAGATCTGCGTACTTCTCTACAACTTCTTCTTGCACAGCCTCTTGCGGAGCTATCTAACCTTTATACATTGTGCCTCTCTAATGTTTGTTTTTACACTCAAATTGTTACGTTGGGTTAAAGGCTTCTTCAATTAA

mRNA sequence

ATGGCCCTTATTACGAGCCCTCCTCCTCAAGCTCTCACCTTGGGCTCCCAACCATTTAGAACATTTGCATATACATCCATCCCTAAGAGACCCTCATATTTGTTTCAACAAAAGAAGCTTAGGAAAACAAGCTACACATTAGCCACCGACGTTAAGCCCCGTTTCGTGTCGTCGTGCTTAAAGGACGGCTCGGTTTGTAGCTTAGATTCATGTTCAAATTCTCCATCAGAAATGGTTAAGAAATTGTACGAGTGCATCAATGAAAAGAAGTTGAAGGAGTTGAGTAGTTACATGTCAGAAGATTGCCTTATTGAGGACTCCTTGTTTGATGAAGCATTTATAGGGAAGGAGGCTGCTCTCAAGTTCTTTAAAGAACTAACTCAAAGTATGGGTCCGGATGTGAAGTTTAGGTTTCGTAACGTCTATGAAATGTGGAAGAACACAAAGATCCCCTTCACCAAAGGTTGCACCTTCATACACATCAACAACGAACAAAGAACCATACAGAAGGCACAAATCATAATAGAACCACAAGTAAAAGCGGGGCATCTCATCTTGGGTATGATGAAGCTGGTAACCTCCTTGCTTGCTCAGTATCCAGCAATTCATAAATGGGTGATGAAACTTTCCCAGCAGCGTTGGGTAAGGTGGGTGGCCAAGATCTGCGTACTTCTCTACAACTTCTTCTTGCACAGCCTCTTGCGGAGCTATCTAACCTTTATACATTGTGCCTCTCTAATGTTTGTTTTTACACTCAAATTGTTACGTTGGGTTAAAGGCTTCTTCAATTAA

Coding sequence (CDS)

ATGGCCCTTATTACGAGCCCTCCTCCTCAAGCTCTCACCTTGGGCTCCCAACCATTTAGAACATTTGCATATACATCCATCCCTAAGAGACCCTCATATTTGTTTCAACAAAAGAAGCTTAGGAAAACAAGCTACACATTAGCCACCGACGTTAAGCCCCGTTTCGTGTCGTCGTGCTTAAAGGACGGCTCGGTTTGTAGCTTAGATTCATGTTCAAATTCTCCATCAGAAATGGTTAAGAAATTGTACGAGTGCATCAATGAAAAGAAGTTGAAGGAGTTGAGTAGTTACATGTCAGAAGATTGCCTTATTGAGGACTCCTTGTTTGATGAAGCATTTATAGGGAAGGAGGCTGCTCTCAAGTTCTTTAAAGAACTAACTCAAAGTATGGGTCCGGATGTGAAGTTTAGGTTTCGTAACGTCTATGAAATGTGGAAGAACACAAAGATCCCCTTCACCAAAGGTTGCACCTTCATACACATCAACAACGAACAAAGAACCATACAGAAGGCACAAATCATAATAGAACCACAAGTAAAAGCGGGGCATCTCATCTTGGGTATGATGAAGCTGGTAACCTCCTTGCTTGCTCAGTATCCAGCAATTCATAAATGGGTGATGAAACTTTCCCAGCAGCGTTGGGTAAGGTGGGTGGCCAAGATCTGCGTACTTCTCTACAACTTCTTCTTGCACAGCCTCTTGCGGAGCTATCTAACCTTTATACATTGTGCCTCTCTAATGTTTGTTTTTACACTCAAATTGTTACGTTGGGTTAAAGGCTTCTTCAATTAA

Protein sequence

MALITSPPPQALTLGSQPFRTFAYTSIPKRPSYLFQQKKLRKTSYTLATDVKPRFVSSCLKDGSVCSLDSCSNSPSEMVKKLYECINEKKLKELSSYMSEDCLIEDSLFDEAFIGKEAALKFFKELTQSMGPDVKFRFRNVYEMWKNTKIPFTKGCTFIHINNEQRTIQKAQIIIEPQVKAGHLILGMMKLVTSLLAQYPAIHKWVMKLSQQRWVRWVAKICVLLYNFFLHSLLRSYLTFIHCASLMFVFTLKLLRWVKGFFN

Homology

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BLAST of Carg16618 vs. NCBI nr
Match: XP_022929026.1 (uncharacterized protein LOC111435747 [Cucurbita moschata])

HSP 1 Score: 514.2 bits (1323), Expect = 2.6e-142
Identity = 262/275 (95.27%), Postives = 263/275 (95.64%), Query Frame = 0


Query: 1   MALITSPPPQALTLGSQPFRTFAYTSIPKRPSYLFQQKKLRKTSYTLATDVKPRFVSSCL 60
           MALITSPPPQALTLGSQPFRTFAYTSIPKRPSYLFQQKKLRKTSYTLATDVKPRFVSSCL
Sbjct: 1   MALITSPPPQALTLGSQPFRTFAYTSIPKRPSYLFQQKKLRKTSYTLATDVKPRFVSSCL 60

Query: 61  KDGSVCSLDSCSNSPSEMVKKLYECINEKKLKELSSYMSEDCLIEDSLFDEAFIGKEAAL 120
           KDGSVCSLDSCSNSPSEMVKKLYECINEKKLKELSSYMSEDCLIEDSLFDEAFIGKEAAL
Sbjct: 61  KDGSVCSLDSCSNSPSEMVKKLYECINEKKLKELSSYMSEDCLIEDSLFDEAFIGKEAAL 120

Query: 121 KFFKELTQSMGPDVKFRFRNVYE------------MWKNTKIPFTKGCTFIHINNEQRTI 180
           KFFKELTQSMGPDVKFRFRNVYE            +WKNTKIPFTKGCTFIHINNEQRTI
Sbjct: 121 KFFKELTQSMGPDVKFRFRNVYESGASRAGVTWHLVWKNTKIPFTKGCTFIHINNEQRTI 180

Query: 181 QKAQIIIEPQVKAGHLILGMMKLVTSLLAQYPAIHKWVMKLSQQRWVRWVAKICVLLYNF 240
           QKAQIIIEPQVKAGHLILGMMKLVTSLLAQYPAIHKWVMKLSQQRWVRWVAKICVLLYNF
Sbjct: 181 QKAQIIIEPQVKAGHLILGMMKLVTSLLAQYPAIHKWVMKLSQQRWVRWVAKICVLLYNF 240

Query: 241 FLHSLLRSYLTFIHCASLMFVFTLKLLRWVKGFFN 264
           FLHSLLRSYLTFIHCASLMFVFTLKLLRWVKGFFN
Sbjct: 241 FLHSLLRSYLTFIHCASLMFVFTLKLLRWVKGFFN 275

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BLAST of Carg16618 vs. NCBI nr
Match: XP_022970084.1 (uncharacterized protein LOC111469081 [Cucurbita maxima])

HSP 1 Score: 485.7 bits (1249), Expect = 9.8e-134
Identity = 246/275 (89.45%), Postives = 255/275 (92.73%), Query Frame = 0


Query: 1   MALITSPPPQALTLGSQPFRTFAYTSIPKRPSYLFQQKKLRKTSYTLATDVKPRFVSSCL 60
           MALITSPPPQALTLGSQPFRTFAYTSIPK+PS LFQQKKLRKTSYTL TDVKPRFV SCL
Sbjct: 1   MALITSPPPQALTLGSQPFRTFAYTSIPKKPSSLFQQKKLRKTSYTLVTDVKPRFVLSCL 60

Query: 61  KDGSVCSLDSCSNSPSEMVKKLYECINEKKLKELSSYMSEDCLIEDSLFDEAFIGKEAAL 120
           KDGSVCSLDSCSNSPSEMVKK YECINEKKLKELSSY+SEDCLIEDSLFDEAFIGKEAAL
Sbjct: 61  KDGSVCSLDSCSNSPSEMVKKFYECINEKKLKELSSYISEDCLIEDSLFDEAFIGKEAAL 120

Query: 121 KFFKELTQSMGPDVKFRFRNVYE------------MWKNTKIPFTKGCTFIHINNEQRTI 180
           KFFKELTQSMGPDVKFRFRNVYE            +WKNTKIPFTKGCTFI INNE+RTI
Sbjct: 121 KFFKELTQSMGPDVKFRFRNVYESGTSRAGATWHLVWKNTKIPFTKGCTFIDINNEERTI 180

Query: 181 QKAQIIIEPQVKAGHLILGMMKLVTSLLAQYPAIHKWVMKLSQQRWVRWVAKICVLLYNF 240
           QKAQII+EPQVKAGHLILGMMKLVTSLLAQYPAIHKWVMKLSQQRWVRW+AKICV+LY F
Sbjct: 181 QKAQIIMEPQVKAGHLILGMMKLVTSLLAQYPAIHKWVMKLSQQRWVRWLAKICVVLYKF 240

Query: 241 FLHSLLRSYLTFIHCASLMFVFTLKLLRWVKGFFN 264
           FLHSL+RSYLTFIHC SLMFVFT+KLLRWV GFFN
Sbjct: 241 FLHSLMRSYLTFIHCGSLMFVFTVKLLRWVIGFFN 275

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BLAST of Carg16618 vs. NCBI nr
Match: XP_023550969.1 (uncharacterized protein LOC111808949 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 482.3 bits (1240), Expect = 1.1e-132
Identity = 247/275 (89.82%), Postives = 253/275 (92.00%), Query Frame = 0


Query: 1   MALITSPPPQALTLGSQPFRTFAYTSIPKRPSYLFQQKKLRKTSYTLATDVKPRFVSSCL 60
           MALITSPPPQALTLGSQPFRTFAYTSIPKRPSYLFQQKKLRKTSYTLAT+VKPRFV SCL
Sbjct: 1   MALITSPPPQALTLGSQPFRTFAYTSIPKRPSYLFQQKKLRKTSYTLATNVKPRFVLSCL 60

Query: 61  KDGSVCSLDSCSNSPSEMVKKLYECINEKKLKELSSYMSEDCLIEDSLFDEAFIGKEAAL 120
           KDGS CSLDSCS SPSEMV+KLYECINEKKLKELSSYMSEDCLIEDSLFDE FIGKEAAL
Sbjct: 61  KDGSGCSLDSCSKSPSEMVRKLYECINEKKLKELSSYMSEDCLIEDSLFDEPFIGKEAAL 120

Query: 121 KFFKELTQSMGPDVKFRFRNVYE------------MWKNTKIPFTKGCTFIHINNEQRTI 180
           KFF+ELTQSMG DVKFRFRNVYE            +WKNTKIPFTKGCTFI INNEQRTI
Sbjct: 121 KFFEELTQSMGRDVKFRFRNVYESGTSRAGATWHLVWKNTKIPFTKGCTFIDINNEQRTI 180

Query: 181 QKAQIIIEPQVKAGHLILGMMKLVTSLLAQYPAIHKWVMKLSQQRWVRWVAKICVLLYNF 240
           QKAQIIIEPQVKAGHLILGMMKLVTSLLAQYPAIHKWVMKLS QRWVRW+AKICV+LY F
Sbjct: 181 QKAQIIIEPQVKAGHLILGMMKLVTSLLAQYPAIHKWVMKLSHQRWVRWLAKICVVLYKF 240

Query: 241 FLHSLLRSYLTFIHCASLMFVFTLKLLRWVKGFFN 264
           FLHSLLRSYLTFIHC SLMFVFTLKLLRWV GFFN
Sbjct: 241 FLHSLLRSYLTFIHCGSLMFVFTLKLLRWVIGFFN 275

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BLAST of Carg16618 vs. NCBI nr
Match: XP_022156726.1 (uncharacterized protein LOC111023569 isoform X1 [Momordica charantia])

HSP 1 Score: 268.5 bits (685), Expect = 2.5e-68
Identity = 154/284 (54.23%), Postives = 193/284 (67.96%), Query Frame = 0


Query: 1   MALITSPPPQALTLGSQPFRTFAYTSIPKRPSYLFQQKK---------LRKTSYTLATDV 60
           MALI SPPP  ++LGSQ FR   YT++PK  S +FQQKK         +RKT+   +TDV
Sbjct: 1   MALIRSPPP--ISLGSQSFRNLPYTALPKISSCVFQQKKTTVLKYGDWMRKTNKRSSTDV 60

Query: 61  KPRFVSSCLKDGSVCSLDSCSNSPSEMVKKLYECINEKKLKELSSYMSEDCLIEDSLFDE 120
           K RFV SCL D S   LDS SN  SEM++  Y CINEK L+EL SY+SEDC+IEDSLF E
Sbjct: 61  KLRFVPSCLPDDSDSCLDSNSNPSSEMIENFYRCINEKNLEELGSYISEDCVIEDSLFIE 120

Query: 121 AFIGKEAALKFFKELTQSMGPDVKFRFRNVYE------------MWKNTKIPFTKGCTFI 180
            F G++ AL+FF+ELTQSMG  VKFR  NVYE             WK+ +IPF+KGCTFI
Sbjct: 121 PFQGRKEALEFFEELTQSMGRYVKFRILNVYESGTSGAGAIWRLAWKDIEIPFSKGCTFI 180

Query: 181 HINNE-QRTIQKAQIIIEPQVKAGHLILGMMKLVTSLLAQYPAIHKWVMKLSQQRWVRWV 240
           +I NE +R IQKAQII+EPQVKAGH IL ++KLVTSLL  +PAI +W++KL Q  WV+W+
Sbjct: 181 NIRNEKRRAIQKAQIIVEPQVKAGHFILALLKLVTSLLDTFPAIPEWLLKLFQLPWVKWL 240

Query: 241 AKICVLLYNFFLHSLLRSYLTFIHCASLM-FVFTLKLLRWVKGF 262
           +KIC+ L+     S L S L F +  +   +V  L  LR++ GF
Sbjct: 241 SKICIKLFTLLWESFLESLLAFKYLYNYRHWVLPLNFLRYILGF 282

[Close]

BLAST of Carg16618 vs. NCBI nr
Match: KGN50069.1 (hypothetical protein Csa_5G152840 [Cucumis sativus])

HSP 1 Score: 256.1 bits (653), Expect = 1.3e-64
Identity = 151/269 (56.13%), Postives = 186/269 (69.14%), Query Frame = 0


Query: 1   MALITSPPPQALTL-GSQPFRTF-AYTSIPKRPSYLFQQKK------LRKTSYTLATDVK 60
           M+LITS  PQA+   GSQ FR F +YT + KR S +FQQKK       RKT+ TL     
Sbjct: 1   MSLITS--PQAVNFGGSQSFRRFSSYTFLNKRTSCIFQQKKNYGNYNKRKTNNTL----- 60

Query: 61  PRFVSSCLKDGSVCSLDSCSNSPSEMVKKLYECINEKKLKELSSYMSEDCLIEDSLFDEA 120
              V SCL D S     S SNSP EM+++ Y+CINEK LKE+S+Y+SEDCLIEDSLF E 
Sbjct: 61  ---VLSCLMDDSFSCPGSSSNSPGEMIERFYKCINEKNLKEMSTYISEDCLIEDSLFIEK 120

Query: 121 FIGKEAALKFFKELTQSMGPDVKFRFRNVYEM------------WKNTKIPFTKGCTFIH 180
           F GK+AA+ F ++LT+SMGPDVKFR R VYE             W+N +IP TKGCTFI 
Sbjct: 121 FKGKKAAMSFIEKLTESMGPDVKFRIRKVYERHPSMAGAIWHLEWRNMEIPLTKGCTFID 180

Query: 181 INNEQR-TIQKAQIIIEPQVKAGHLILGMMKLVTSLLAQYPAIHKWVMKLSQQRWVRWVA 240
           I +E+R TIQK QII EPQ KAGHLIL +MKLVT LLA+  AI +W++K SQQRWV+W++
Sbjct: 181 IRDEERKTIQKIQIINEPQFKAGHLILDIMKLVTLLLAKNSAILEWLIKASQQRWVKWMS 240

Query: 241 KICVLLYNFFLHSLLRSYLTFIHCASLMF 249
           KICV L+N  L S  +SYLTFIH  + ++
Sbjct: 241 KICVTLFNLLLDSFSKSYLTFIHFGAQLY 259

[Close]

BLAST of Carg16618 vs. TAIR10
Match: AT5G41470.1 (Nuclear transport factor 2 (NTF2) family protein)

HSP 1 Score: 100.5 bits (249), Expect = 1.6e-21
Identity = 71/221 (32.13%), Postives = 116/221 (52.49%), Query Frame = 0


Query: 65  VCSLDSCSNSPSEM-----VKKLYECINEKKLKELSSYMSEDCLIEDSLFDEAFIGKEAA 124
           V  LD  ++ P+++     V K Y  INEK   +LSS +S DC I+D  F + F GK+ A
Sbjct: 60  VSCLDRPNSRPNQISGYDAVMKFYSSINEKNQDQLSSCISSDCFIDDFSFPKPFRGKQEA 119

Query: 125 LKFFKELTQSMGPDVKFRFRNVYE------------MWKNTKIPFTKGCTFIHINNE--Q 184
           ++FF+EL +SMG +VKF   NV E             WK  KIPFT+GC+F    +E  +
Sbjct: 120 MEFFEELVKSMGQNVKFCVENVCEGDGHSAAVNWHLEWKGRKIPFTRGCSFYEFIDEGGR 179

Query: 185 RTIQKAQIIIEPQVKAGHLILGMMKLVTSLLAQYPAIHKWVMKLSQQRWVRWVAKICVLL 244
             I+ A+I+IE  +K G + L ++K +T L  ++P   K      ++ +   + +  + +
Sbjct: 180 LVIRNARILIESPIKPGGITLSLLKNITFLFDEFP---KGAELFLEKPYA--IIQAAIRI 239

Query: 245 YNFFLHSLLR----SYLTFIHCASLMFVFTLKLLRWVKGFF 263
           Y  FL  L+     SYL  +   +  F+  +K++  ++  F
Sbjct: 240 YGLFLAPLINHVMASYLKLLSNMAEFFLLVVKIIIKIRNLF 275

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BLAST of Carg16618 vs. TAIR10
Match: AT1G71480.1 (Nuclear transport factor 2 (NTF2) family protein)

HSP 1 Score: 79.3 bits (194), Expect = 3.8e-15
Identity = 56/214 (26.17%), Postives = 94/214 (43.93%), Query Frame = 0


Query: 9   PQALTLGSQPFRTFAYTSIPKRPSYLFQQKKLRKTSY------TLATDVKPRFVSSCLKD 68
           P  ++L   P   F  T + K  S    Q      SY        A DV P         
Sbjct: 14  PSLVSLNHLPPSFFLPTKLVKPTSLTHSQPPRLSASYGPAAKAATANDVVP--------- 73

Query: 69  GSVCSLDSCSNSPSEMVKKLYECINEKKLKELSSYMSEDCLIEDSLFDEAFIGKEAALKF 128
                 ++   S SE+V   Y  +N   L  ++  +++DC+ ED +F   F+G++A L F
Sbjct: 74  ------ETAPTSASEVVSSFYAAVNVHDLSSVTDLIAQDCVYEDLVFSSPFVGRKAILDF 133

Query: 129 FKELTQSMGPDVKFRFRNV------------YEMWKNTKIPFTKGCTF--IHINNEQRTI 188
           F +  +S   D++F   ++            +  WK    PF+KGC+F  + + + +R I
Sbjct: 134 FGKFIESTSTDLQFVIDDISTEDSSAVGVSWHLEWKGKNFPFSKGCSFYRLEVIDGKRQI 193

Query: 189 QKAQIIIEPQVKAGHLILGMMKLVTSLLAQYPAI 203
              +  +EP +K G  +L  +K VT LL ++P +
Sbjct: 194 VYGRDCVEPAIKPGETVLAAIKGVTWLLQKFPQL 212

[Close]

BLAST of Carg16618 vs. TrEMBL
Match: tr|A0A0A0KMI4|A0A0A0KMI4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G152840 PE=4 SV=1)

HSP 1 Score: 256.1 bits (653), Expect = 8.3e-65
Identity = 151/269 (56.13%), Postives = 186/269 (69.14%), Query Frame = 0


Query: 1   MALITSPPPQALTL-GSQPFRTF-AYTSIPKRPSYLFQQKK------LRKTSYTLATDVK 60
           M+LITS  PQA+   GSQ FR F +YT + KR S +FQQKK       RKT+ TL     
Sbjct: 1   MSLITS--PQAVNFGGSQSFRRFSSYTFLNKRTSCIFQQKKNYGNYNKRKTNNTL----- 60

Query: 61  PRFVSSCLKDGSVCSLDSCSNSPSEMVKKLYECINEKKLKELSSYMSEDCLIEDSLFDEA 120
              V SCL D S     S SNSP EM+++ Y+CINEK LKE+S+Y+SEDCLIEDSLF E 
Sbjct: 61  ---VLSCLMDDSFSCPGSSSNSPGEMIERFYKCINEKNLKEMSTYISEDCLIEDSLFIEK 120

Query: 121 FIGKEAALKFFKELTQSMGPDVKFRFRNVYEM------------WKNTKIPFTKGCTFIH 180
           F GK+AA+ F ++LT+SMGPDVKFR R VYE             W+N +IP TKGCTFI 
Sbjct: 121 FKGKKAAMSFIEKLTESMGPDVKFRIRKVYERHPSMAGAIWHLEWRNMEIPLTKGCTFID 180

Query: 181 INNEQR-TIQKAQIIIEPQVKAGHLILGMMKLVTSLLAQYPAIHKWVMKLSQQRWVRWVA 240
           I +E+R TIQK QII EPQ KAGHLIL +MKLVT LLA+  AI +W++K SQQRWV+W++
Sbjct: 181 IRDEERKTIQKIQIINEPQFKAGHLILDIMKLVTLLLAKNSAILEWLIKASQQRWVKWMS 240

Query: 241 KICVLLYNFFLHSLLRSYLTFIHCASLMF 249
           KICV L+N  L S  +SYLTFIH  + ++
Sbjct: 241 KICVTLFNLLLDSFSKSYLTFIHFGAQLY 259

[Close]

BLAST of Carg16618 vs. TrEMBL
Match: tr|A0A1S3ATV9|A0A1S3ATV9_CUCME (uncharacterized protein LOC103482777 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103482777 PE=4 SV=1)

HSP 1 Score: 251.5 bits (641), Expect = 2.1e-63
Identity = 145/273 (53.11%), Postives = 186/273 (68.13%), Query Frame = 0


Query: 1   MALITSPPPQALTLGSQP-FRTFAYT-SIPKRPSYLFQQKKLRKTSYTLATDVKPRFVSS 60
           M+LITS  PQA+  G  P FR F+YT  + KR S +FQQKK         T+V  R VSS
Sbjct: 1   MSLITS--PQAVNFGGSPSFRRFSYTLFLNKRTSCIFQQKKNYGNYNKRKTNV--RLVSS 60

Query: 61  CLKDGSVCSLDSCSNSPSEMVKKLYECINEKKLKELSSYMSEDCLIEDSLFDEAFIGKEA 120
           CL D S     S SNSP EM++  Y+CINEK LK++++Y+SEDCLIEDSLF E F GK+A
Sbjct: 61  CLMDDSFSYSSSSSNSPGEMIEMFYKCINEKNLKKMNTYISEDCLIEDSLFIEKFKGKKA 120

Query: 121 ALKFFKELTQSMGPDVKFRFRNVYEM------------WKNTKIPFTKGCTFIHINNEQR 180
           A+ F ++LT+SMGPDVKFR R VYE             W+N +IP TKGCTFI I +E+R
Sbjct: 121 AMSFIEKLTESMGPDVKFRIRTVYERRPSMAGAIWHLEWRNMEIPLTKGCTFIDIRDEER 180

Query: 181 -TIQKAQIIIEPQVKAGHLILGMMKLVTSLLAQYPAIHKWVMKLSQQRWVRWVAKICVLL 240
            TIQ  QII E Q+KAGHL L +MKLVT LLA++PAI +W+ K+SQQRWV+ ++KIC+ L
Sbjct: 181 KTIQMVQIITESQLKAGHLFLAIMKLVTLLLAKHPAILEWLTKVSQQRWVKRISKICIFL 240

Query: 241 YNFFLHSLLRSYLTFIHCASLMFVFTLKLLRWV 259
           +   L + L+SYLTFIH  + ++   L  L +V
Sbjct: 241 FKHLLDNFLKSYLTFIHLGTQLYSHVLNFLCYV 269

[Close]

BLAST of Carg16618 vs. TrEMBL
Match: tr|A0A1S3AUC2|A0A1S3AUC2_CUCME (uncharacterized protein LOC103482777 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103482777 PE=4 SV=1)

HSP 1 Score: 218.0 bits (554), Expect = 2.5e-53
Identity = 114/210 (54.29%), Postives = 149/210 (70.95%), Query Frame = 0


Query: 62  DGSVCSLDSCSNSPSEMVKKLYECINEKKLKELSSYMSEDCLIEDSLFDEAFIGKEAALK 121
           D S     S SNSP EM++  Y+CINEK LKE+S+Y+SEDCLIED+LF E F GK+AA+ 
Sbjct: 2   DDSFSCSGSSSNSPGEMIEIFYKCINEKNLKEMSTYISEDCLIEDTLFSEKFKGKKAAMS 61

Query: 122 FFKELTQSMGPDVKFRFRNVYEM------------WKNTKIPFTKGCTFIHINNEQR-TI 181
           F ++LT+SMGPD+KFR R VYE             W+N +IP TKGCTFI I +E+R TI
Sbjct: 62  FIEKLTESMGPDMKFRIRKVYERRPSTARAIWHLEWRNMEIPLTKGCTFIDIRDEERKTI 121

Query: 182 QKAQIIIEPQVKAGHLILGMMKLVTSLLAQYPAIHKWVMKLSQQRWVRWVAKICVLLYNF 241
           Q  QII E Q+KAGHL L +MKLVT LLA++PAI +W+ K+SQQRWV+ ++KIC+ L+  
Sbjct: 122 QMVQIITESQLKAGHLFLAIMKLVTLLLAKHPAILEWLTKVSQQRWVKRISKICIFLFKH 181

Query: 242 FLHSLLRSYLTFIHCASLMFVFTLKLLRWV 259
            L + L+SYLTFIH  + ++   L  L +V
Sbjct: 182 LLDNFLKSYLTFIHLGTQLYSHVLNFLCYV 211

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BLAST of Carg16618 vs. TrEMBL
Match: tr|A0A2P5FJ25|A0A2P5FJ25_9ROSA (Polyketide cyclase SnoaL-like domain containing protein OS=Trema orientalis OX=63057 GN=TorRG33x02_063910 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 2.4e-27
Identity = 75/197 (38.07%), Postives = 118/197 (59.90%), Query Frame = 0


Query: 74  SPSEMVKKLYECINEKKLKELSSYMSEDCLIEDSLFDEAFIGKEAALKFFKELTQSMGPD 133
           SP  ++K+ YECINEK+LK L  Y+SEDC IE+  F     GKE  L FF  L  SMG +
Sbjct: 84  SPLGIIKEFYECINEKQLKRLGDYISEDCYIEECSFPTPIEGKEEVLHFFDLLIASMGEN 143

Query: 134 VKFRFRNVYE-------------MWKNTKIPFTKGCTFIHIN--NEQRTIQKAQIIIEPQ 193
           VKF+  ++ E              WK  +IPFT+GC+F   +   E+ TI+KAQI+ E  
Sbjct: 144 VKFKVIHLCEGDDQLIAAANWHLEWKKAQIPFTRGCSFFECSREGEKITIKKAQIVNESP 203

Query: 194 VKAGHLILGMMKLVTSLLAQYPAIHKWVMKLSQQRWVRWVAKICVLLYNFFLHSLLRSYL 253
           +K G L+L ++K+VT+L   +P+  +W +K S    ++W+ KI  +++  F++ +L+SYL
Sbjct: 204 IKPGSLVLTLLKIVTTLFDDFPSTTEWFLK-SPHVILQWLLKIYNIIWTIFINPILKSYL 263

Query: 254 TFIHCASLMFVFTLKLL 256
              + A+L+  +  ++L
Sbjct: 264 HVWNFATLLHSYAFQIL 279

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BLAST of Carg16618 vs. TrEMBL
Match: tr|A0A2P5AH73|A0A2P5AH73_PARAD (Polyketide cyclase SnoaL-like domain containing protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_332840 PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 3.1e-27
Identity = 76/207 (36.71%), Postives = 123/207 (59.42%), Query Frame = 0


Query: 64  SVCSLDSCSNSPSEMVKKLYECINEKKLKELSSYMSEDCLIEDSLFDEAFIGKEAALKFF 123
           S  + +S   SP  ++K+ YECINEK+LK L  Y+SEDC IE+  F     GKE  L+F+
Sbjct: 74  STSNSNSSYLSPLGIIKEFYECINEKQLKRLGDYISEDCYIEECSFPTPIEGKEEVLRFY 133

Query: 124 KELTQSMGPDVKFRFRNVYE-------------MWKNTKIPFTKGCTFIHIN--NEQRTI 183
             L  SMG +VKF+  ++ E              WK  +IPFT+GC+F   +   E+ TI
Sbjct: 134 DLLIASMGENVKFKVVHLCEGDDQLIAAANWHLEWKKARIPFTRGCSFFECSKEGEKITI 193

Query: 184 QKAQIIIEPQVKAGHLILGMMKLVTSLLAQYPAIHKWVMKLSQQRWVRWVAKICVLLYNF 243
           +KAQI+ E  +K G L+L ++K+VT+L   +P+  +W +K S    ++W+ KI  +++  
Sbjct: 194 KKAQIVNESPIKPGSLVLKLLKIVTTLFDDFPSTTEWFLK-SPHIILQWLLKIYNIIWTI 253

Query: 244 FLHSLLRSYLTFIHCASLMFVFTLKLL 256
           F++ +L+SYL   + A+L+  +  ++L
Sbjct: 254 FINPILKSYLHVWNFATLLHSYAFQIL 279

The following BLAST results are available for this feature:

BLAST of Carg16618 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022929026.1	2.6e-142	95.27	uncharacterized protein LOC111435747 [Cucurbita moschata]	[more]
XP_022970084.1	9.8e-134	89.45	uncharacterized protein LOC111469081 [Cucurbita maxima]	[more]
XP_023550969.1	1.1e-132	89.82	uncharacterized protein LOC111808949 [Cucurbita pepo subsp. pepo]	[more]
XP_022156726.1	2.5e-68	54.23	uncharacterized protein LOC111023569 isoform X1 [Momordica charantia]	[more]
KGN50069.1	1.3e-64	56.13	hypothetical protein Csa_5G152840 [Cucumis sativus]	[more]

BLAST of Carg16618 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G41470.1	1.6e-21	32.13	Nuclear transport factor 2 (NTF2) family protein	[more]
AT1G71480.1	3.8e-15	26.17	Nuclear transport factor 2 (NTF2) family protein	[more]

BLAST of Carg16618 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg16618 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KMI4\|A0A0A0KMI4_CUCSA	8.3e-65	56.13	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G152840 PE=4 SV=1	[more]
tr\|A0A1S3ATV9\|A0A1S3ATV9_CUCME	2.1e-63	53.11	uncharacterized protein LOC103482777 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A1S3AUC2\|A0A1S3AUC2_CUCME	2.5e-53	54.29	uncharacterized protein LOC103482777 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A2P5FJ25\|A0A2P5FJ25_9ROSA	2.4e-27	38.07	Polyketide cyclase SnoaL-like domain containing protein OS=Trema orientalis OX=6...	[more]
tr\|A0A2P5AH73\|A0A2P5AH73_PARAD	3.1e-27	36.71	Polyketide cyclase SnoaL-like domain containing protein OS=Parasponia andersonii...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR032710	NTF2-like_dom_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg16618-RA	Carg16618-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	G3DSA:3.10.450.50		coord: 70..199 e-value: 1.4E-7 score: 33.3
None	No IPR available	PANTHER	PTHR33698	FAMILY NOT NAMED	coord: 70..255
None	No IPR available	PANTHER	PTHR33698:SF1	NUCLEAR TRANSPORT FACTOR 2 NTF2 FAMILY PROTEIN	coord: 70..255
IPR032710	NTF2-like domain superfamily	SUPERFAMILY	SSF54427	NTF2-like	coord: 76..143

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg16618	Cla011422	Watermelon (97103) v1	carwmB0938
Carg16618	Csa5G152840	Cucumber (Chinese Long) v2	carcuB0954
Carg16618	MELO3C005702	Melon (DHL92) v3.5.1	carmeB0920
Carg16618	ClCG01G002430	Watermelon (Charleston Gray)	carwcgB0912
Carg16618	CSPI05G05130	Wild cucumber (PI 183967)	carcpiB0977
Carg16618	Cucsa.303400	Cucumber (Gy14) v1	carcgyB1054
Carg16618	CmaCh15G012460	Cucurbita maxima (Rimu)	carcmaB1281
Carg16618	CmoCh15G013120	Cucurbita moschata (Rifu)	carcmoB1252
Carg16618	Lsi09G002290	Bottle gourd (USVL1VR-Ls)	carlsiB851
Carg16618	Cp4.1LG13g01470	Cucurbita pepo (Zucchini)	carcpeB1295
Carg16618	CsGy5G002430	Cucumber (Gy14) v2	carcgybB0927
Carg16618	MELO3C005702.2	Melon (DHL92) v3.6.1	carmedB0927
Carg16618	CsaV3_5G002540	Cucumber (Chinese Long) v3	carcucB0979
Carg16618	Cla97C01G002500	Watermelon (97103) v2	carwmbB0980
Carg16618	Bhi12G000278	Wax gourd	carwgoB1081

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg16618	Silver-seed gourd	carcarB643
Carg16618	Cucurbita maxima (Rimu)	carcmaB1283
Carg16618	Cucurbita moschata (Rifu)	carcmoB1254
Carg16618	Cucurbita pepo (Zucchini)	carcpeB1294
Carg16618	Cucurbita pepo (Zucchini)	carcpeB1298
Carg16618	Cucumber (Chinese Long) v3	carcucB0976
Carg16618	Watermelon (97103) v1	carwmB0935
Carg16618	Watermelon (97103) v2	carwmbB0982
Carg16618	Watermelon (97103) v2	carwmbB0986