MELO3C004787 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C004787
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionCytoplasmic tRNA 2-thiolation protein 1
Locationchr12 : 10397605 .. 10402029 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTAATTGCGCTCACTCCATCACAGAATGCCTTGGTTTCTGATCGACTTCTTAGGCATTCAAATATTAATGTCAAAGTTGCAGTTGCAGCATGCGTTAGTGAAATAACTCGGATCATTGCACCTAATGCCCCTTACAGTGATGGAAATATGAAGGTAATCAGAAATTTGCTCGATTGAATGCCAATTTCCCACTTGTCGAATCTACTTCTAAAGAGTTGAATGTATGCTGCTGTTCAGGAGGTATTTCATCTTATAGTATCATCCTTTGAAAATCTCTCTGACAAGTCAAGTCGATCATATGTAAAATGCGCATCCATTCTTGAAACTGTTCCGAGGGTCAGATTATATGTGGCCATGCTGGATTTGGAATGTGATGCATTGATATGTTCCAACATTTCCTTAAGACAGTAA

mRNA sequence

ATGCTAATTGCGCTCACTCCATCACAGAATGCCTTGGTTTCTGATCGACTTCTTAGGCATTCAAATATTAATGTCAAAGTTGCAGTTGCAGCATGCGTTAGTGAAATAACTCGGATCATTGCACCTAATGCCCCTTACAGTGATGGAAATATGAAGGAGGTATTTCATCTTATAGTATCATCCTTTGAAAATCTCTCTGACAAGTCAAGTCGATCATATGTAAAATGCGCATCCATTCTTGAAACTGTTCCGAGGGTCAGATTATATGTGGCCATGCTGGATTTGGAATGTGATGCATTGATATGTTCCAACATTTCCTTAAGACAGTAA

Coding sequence (CDS)

ATGCTAATTGCGCTCACTCCATCACAGAATGCCTTGGTTTCTGATCGACTTCTTAGGCATTCAAATATTAATGTCAAAGTTGCAGTTGCAGCATGCGTTAGTGAAATAACTCGGATCATTGCACCTAATGCCCCTTACAGTGATGGAAATATGAAGGAGGTATTTCATCTTATAGTATCATCCTTTGAAAATCTCTCTGACAAGTCAAGTCGATCATATGTAAAATGCGCATCCATTCTTGAAACTGTTCCGAGGGTCAGATTATATGTGGCCATGCTGGATTTGGAATGTGATGCATTGATATGTTCCAACATTTCCTTAAGACAGTAA

Protein sequence

MLIALTPSQNALVSDRLLRHSNINVKVAVAACVSEITRIIAPNAPYSDGNMKEVFHLIVSSFENLSDKSSRSYVKCASILETVPRVRLYVAMLDLECDALICSNISLRQ*
Homology
[Close]
BLAST of MELO3C004787 vs. Swiss-Prot
Match: CTU1_ARATH (Cytoplasmic tRNA 2-thiolation protein 1 OS=Arabidopsis thaliana GN=NCS6 PE=2 SV=2)

HSP 1 Score: 124.8 bits (312), Expect = 7.0e-28
Identity = 64/95 (67.37%), Postives = 74/95 (77.89%), Query Frame = 1 

Query: 33  VSEITRIIA--PNAPYSDGNMKEALDRGAALLKVVKLATRHNAIDMAETVLLDILRGDIA 92
           + EI ++I    N  +     ++ALDRGAALLKV KL T HNA D+AETVLL+ILRGDIA
Sbjct: 136 MDEIVKMIGLKNNCTFCGVFRRQALDRGAALLKVEKLVTGHNADDIAETVLLNILRGDIA 195

Query: 93  RLSRCTAISTDEDGPIPRCKPFKYTYEKKIVVYFY 126
           RLSRCT+I+T EDGPIPRCKPFKYTYEK+IV+Y Y
Sbjct: 196 RLSRCTSITTGEDGPIPRCKPFKYTYEKEIVMYAY 230

[Close]
BLAST of MELO3C004787 vs. Swiss-Prot
Match: CTU1_ORYSJ (Cytoplasmic tRNA 2-thiolation protein 1 OS=Oryza sativa subsp. japonica GN=NCS6 PE=2 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 4.5e-27
Identity = 59/74 (79.73%), Postives = 65/74 (87.84%), Query Frame = 1 

Query: 52  KEALDRGAALLKVVKLATRHNAIDMAETVLLDILRGDIARLSRCTAISTDEDGPIPRCKP 111
           ++ALDRGAALLKV K+ T HNA D+AETVLL+ILRGDIARLSRCT I+T EDGPIPRCKP
Sbjct: 163 RQALDRGAALLKVDKIVTGHNADDIAETVLLNILRGDIARLSRCTFITTGEDGPIPRCKP 222

Query: 112 FKYTYEKKIVVYFY 126
           FKYTYEK+IV+Y Y
Sbjct: 223 FKYTYEKEIVMYAY 236

[Close]
BLAST of MELO3C004787 vs. Swiss-Prot
Match: CTU1_XENLA (Cytoplasmic tRNA 2-thiolation protein 1 OS=Xenopus laevis GN=ctu1 PE=2 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 4.4e-22
Identity = 49/74 (66.22%), Postives = 59/74 (79.73%), Query Frame = 1 

Query: 52  KEALDRGAALLKVVKLATRHNAIDMAETVLLDILRGDIARLSRCTAISTDEDGPIPRCKP 111
           ++ALDRGA +L + K+ T HNA D+AETVL++ LRGDIARL RCTAI+T  +G IPRCKP
Sbjct: 148 RQALDRGAMMLGINKICTGHNADDIAETVLMNFLRGDIARLRRCTAITTGSEGAIPRCKP 207

Query: 112 FKYTYEKKIVVYFY 126
            KYTYEK+IV+Y Y
Sbjct: 208 LKYTYEKEIVLYAY 221

[Close]
BLAST of MELO3C004787 vs. Swiss-Prot
Match: CTU1_DANRE (Cytoplasmic tRNA 2-thiolation protein 1 OS=Danio rerio GN=ctu1 PE=2 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 1.3e-21
Identity = 51/76 (67.11%), Postives = 60/76 (78.95%), Query Frame = 1 

Query: 52  KEALDRGAALLKVVKLATRHNAIDMAETVLLDILRGDIARLSRCTAIST--DEDGPIPRC 111
           ++ALDRGA +L V K+ T HNA D+AETVL+++LRGDIARL RCTAIST  + DG IPRC
Sbjct: 148 RQALDRGAMMLNVDKICTGHNADDVAETVLMNVLRGDIARLRRCTAISTSSEGDGAIPRC 207

Query: 112 KPFKYTYEKKIVVYFY 126
           KP KY YEK+IV+Y Y
Sbjct: 208 KPLKYAYEKEIVLYAY 223

[Close]
BLAST of MELO3C004787 vs. Swiss-Prot
Match: CTU1_XENTR (Cytoplasmic tRNA 2-thiolation protein 1 OS=Xenopus tropicalis GN=ctu1 PE=2 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 2.8e-21
Identity = 48/74 (64.86%), Postives = 58/74 (78.38%), Query Frame = 1 

Query: 52  KEALDRGAALLKVVKLATRHNAIDMAETVLLDILRGDIARLSRCTAISTDEDGPIPRCKP 111
           ++ALDRGA +L V K+ T HNA D+AETVL++ LRGDIARL RCT+I+T  +G IPRCKP
Sbjct: 148 RQALDRGAMMLGVNKICTGHNADDIAETVLMNFLRGDIARLRRCTSITTGSEGAIPRCKP 207

Query: 112 FKYTYEKKIVVYFY 126
            KY YEK+IV+Y Y
Sbjct: 208 LKYAYEKEIVLYAY 221

[Close]
BLAST of MELO3C004787 vs. TrEMBL
Match: A0A059BW08_EUCGR (Cytoplasmic tRNA 2-thiolation protein 1 OS=Eucalyptus grandis GN=NCS6 PE=3 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 7.0e-27
Identity = 67/95 (70.53%), Postives = 77/95 (81.05%), Query Frame = 1 

Query: 33  VSEITRIIA--PNAPYSDGNMKEALDRGAALLKVVKLATRHNAIDMAETVLLDILRGDIA 92
           + EI +II    N  +     ++ALDRGAALLKV KLAT HNA D+AETVLL+ILRGDIA
Sbjct: 139 MDEIVKIIGLKNNCTFCGVFRRQALDRGAALLKVDKLATGHNADDIAETVLLNILRGDIA 198

Query: 93  RLSRCTAISTDEDGPIPRCKPFKYTYEKKIVVYFY 126
           RLSRCTAI+T EDGPIPRCKPFKYTYEK+IV+Y Y
Sbjct: 199 RLSRCTAITTGEDGPIPRCKPFKYTYEKEIVMYAY 233

[Close]
BLAST of MELO3C004787 vs. TrEMBL
Match: A0A0A0LKF0_CUCSA (Cytoplasmic tRNA 2-thiolation protein 1 OS=Cucumis sativus GN=NCS6 PE=3 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 1.2e-26
Identity = 67/95 (70.53%), Postives = 76/95 (80.00%), Query Frame = 1 

Query: 33  VSEITRIIA--PNAPYSDGNMKEALDRGAALLKVVKLATRHNAIDMAETVLLDILRGDIA 92
           + EI ++I    N  +     ++ALDRGAALLKV KLAT HNA DMAETVLL+ILRGDIA
Sbjct: 138 MDEIVKMIGLKNNCTFCGVFRRQALDRGAALLKVDKLATGHNADDMAETVLLNILRGDIA 197

Query: 93  RLSRCTAISTDEDGPIPRCKPFKYTYEKKIVVYFY 126
           RLSRCTAI T EDGPIPRCKPFKYTYEK+IV+Y Y
Sbjct: 198 RLSRCTAIITGEDGPIPRCKPFKYTYEKEIVMYAY 232

[Close]
BLAST of MELO3C004787 vs. TrEMBL
Match: A0A151SFJ5_CAJCA (Cytoplasmic tRNA 2-thiolation protein 1 OS=Cajanus cajan GN=KK1_024469 PE=4 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 2.0e-26
Identity = 67/115 (58.26%), Postives = 83/115 (72.17%), Query Frame = 1 

Query: 11  ALVSDRLLRHSNINVKVAVAACVSEITRIIAPNAPYSDGNMKEALDRGAALLKVVKLATR 70
           A V  +L RH N  + + + +    IT        Y D +++ ALDRGAALLKV KL T 
Sbjct: 74  AYVLSKLNRHHNYGLHLFLLSVDEGITG-------YRDDSLQTALDRGAALLKVDKLVTG 133

Query: 71  HNAIDMAETVLLDILRGDIARLSRCTAISTDEDGPIPRCKPFKYTYEKKIVVYFY 126
           HNA D+AETVLL++LRGD+ARLSRCT+I+T EDG IPRCKPFKYTYEK+IV+Y Y
Sbjct: 134 HNADDIAETVLLNLLRGDVARLSRCTSITTGEDGAIPRCKPFKYTYEKEIVIYPY 181

[Close]
BLAST of MELO3C004787 vs. TrEMBL
Match: A0A087GX57_ARAAL (Cytoplasmic tRNA 2-thiolation protein 1 OS=Arabis alpina GN=NCS6 PE=3 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 7.8e-26
Identity = 64/95 (67.37%), Postives = 76/95 (80.00%), Query Frame = 1 

Query: 33  VSEITRIIA--PNAPYSDGNMKEALDRGAALLKVVKLATRHNAIDMAETVLLDILRGDIA 92
           + EI ++I    N  +     ++ALDRGAALLKV K+ T HNA D+AETVLL+ILRGDIA
Sbjct: 139 MDEIVKMIGLKNNCTFCGVFRRQALDRGAALLKVDKIVTGHNADDIAETVLLNILRGDIA 198

Query: 93  RLSRCTAISTDEDGPIPRCKPFKYTYEKKIVVYFY 126
           RLSRCTAI+T EDGPIPRCKPFKYTYEK+IV+Y Y
Sbjct: 199 RLSRCTAITTGEDGPIPRCKPFKYTYEKEIVMYAY 233

[Close]
BLAST of MELO3C004787 vs. TrEMBL
Match: A0A067KKS9_JATCU (Cytoplasmic tRNA 2-thiolation protein 1 OS=Jatropha curcas GN=NCS6 PE=3 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 7.8e-26
Identity = 64/95 (67.37%), Postives = 77/95 (81.05%), Query Frame = 1 

Query: 33  VSEITRIIA--PNAPYSDGNMKEALDRGAALLKVVKLATRHNAIDMAETVLLDILRGDIA 92
           + EI ++I    N  +     ++ALDRGAA+LKV KLAT HNA D+AETVLL+ILRGDIA
Sbjct: 138 MDEIVKMIGLKNNCTFCGVFRRQALDRGAAVLKVDKLATGHNADDIAETVLLNILRGDIA 197

Query: 93  RLSRCTAISTDEDGPIPRCKPFKYTYEKKIVVYFY 126
           RLSRCT+I+T EDGPIPRCKPFKYTYEK+IV+Y Y
Sbjct: 198 RLSRCTSITTGEDGPIPRCKPFKYTYEKEIVMYAY 232

[Close]
BLAST of MELO3C004787 vs. TAIR10
Match: AT1G76170.1 (AT1G76170.1 2-thiocytidine tRNA biosynthesis protein, TtcA)

HSP 1 Score: 123.2 bits (308), Expect = 1.1e-28
Identity = 63/95 (66.32%), Postives = 74/95 (77.89%), Query Frame = 1 

Query: 33  VSEITRIIA--PNAPYSDGNMKEALDRGAALLKVVKLATRHNAIDMAETVLLDILRGDIA 92
           + EI ++I    N  +     ++ALDRGAALLKV KL T HNA D+AETV+L+ILRGDIA
Sbjct: 114 MDEIVKMIGLKNNCTFCGVFRRQALDRGAALLKVDKLVTGHNADDIAETVVLNILRGDIA 173

Query: 93  RLSRCTAISTDEDGPIPRCKPFKYTYEKKIVVYFY 126
           RLSRCT+I+T EDGPIPRCKPFKYTYEK+IV+Y Y
Sbjct: 174 RLSRCTSITTGEDGPIPRCKPFKYTYEKEIVMYAY 208

[Close]
BLAST of MELO3C004787 vs. TAIR10
Match: AT2G44270.2 (AT2G44270.2 repressor of lrx1)

HSP 1 Score: 109.0 bits (271), Expect = 2.2e-24
Identity = 56/86 (65.12%), Postives = 65/86 (75.58%), Query Frame = 1 

Query: 33  VSEITRIIA--PNAPYSDGNMKEALDRGAALLKVVKLATRHNAIDMAETVLLDILRGDIA 92
           + EI ++I    N  +     ++ALDRGAALLKV KL T HNA D+AETVLL+ILRGDIA
Sbjct: 146 MDEIVKMIGLKNNCTFCGVFRRQALDRGAALLKVEKLVTGHNADDIAETVLLNILRGDIA 205

Query: 93  RLSRCTAISTDEDGPIPRCKPFKYTY 117
           RLSRCT+I+T EDGPIPRCKPF +TY
Sbjct: 206 RLSRCTSITTGEDGPIPRCKPFNFTY 231

[Close]
BLAST of MELO3C004787 vs. TAIR10
Match: AT4G31880.1 (AT4G31880.1 LOCATED IN: cytosol, chloroplast)

HSP 1 Score: 68.9 bits (167), Expect = 2.6e-12
Identity = 32/50 (64.00%), Postives = 37/50 (74.00%), Query Frame = 1 

Query: 4   ALTPSQNALVSDRLLRHSNINVKVAVAACVSEITRIIAPNAPYSDGNMKE 54
           ALTP    LV  +L +HS+++VKVAVAAC+SEITRI AP+APY D  MKE
Sbjct: 54  ALTPLMKGLVGGKLFKHSDVDVKVAVAACISEITRITAPDAPYDDDQMKE 103

[Close]
BLAST of MELO3C004787 vs. TAIR10
Match: AT1G80810.2 (AT1G80810.2 Tudor/PWWP/MBT superfamily protein)

HSP 1 Score: 58.9 bits (141), Expect = 2.6e-09
Identity = 30/53 (56.60%), Postives = 36/53 (67.92%), Query Frame = 1 

Query: 1  MLIALTPSQNALVSDRLLRHSNINVKVAVAACVSEITRIIAPNAPYSDGNMKE 54
          M  AL PS+NALVS  LL H + +V+V+V +C++EI RI AP  PYSD  MKE
Sbjct: 1  MQSALIPSRNALVSVDLLSHPDSDVRVSVVSCLTEIVRITAPETPYSDDLMKE 53

[Close]
BLAST of MELO3C004787 vs. TAIR10
Match: AT5G47690.3 (AT5G47690.3 binding)

HSP 1 Score: 55.8 bits (133), Expect = 2.2e-08
Identity = 26/53 (49.06%), Postives = 36/53 (67.92%), Query Frame = 1 

Query: 1   MLIALTPSQNALVSDRLLRHSNINVKVAVAACVSEITRIIAPNAPYSDGNMKE 54
           +L ++ P  +A++   +L H + +VK+ VA+CVSEITRI AP APYSD  MK+
Sbjct: 48  VLKSIQPFLDAVIKPEILNHQDKDVKLLVASCVSEITRITAPEAPYSDNIMKD 100

[Close]
BLAST of MELO3C004787 vs. NCBI nr
Match: gi|702378815|ref|XP_010063105.1| (PREDICTED: cytoplasmic tRNA 2-thiolation protein 1 [Eucalyptus grandis])

HSP 1 Score: 128.3 bits (321), Expect = 1.0e-26
Identity = 67/95 (70.53%), Postives = 77/95 (81.05%), Query Frame = 1 

Query: 33  VSEITRIIA--PNAPYSDGNMKEALDRGAALLKVVKLATRHNAIDMAETVLLDILRGDIA 92
           + EI +II    N  +     ++ALDRGAALLKV KLAT HNA D+AETVLL+ILRGDIA
Sbjct: 139 MDEIVKIIGLKNNCTFCGVFRRQALDRGAALLKVDKLATGHNADDIAETVLLNILRGDIA 198

Query: 93  RLSRCTAISTDEDGPIPRCKPFKYTYEKKIVVYFY 126
           RLSRCTAI+T EDGPIPRCKPFKYTYEK+IV+Y Y
Sbjct: 199 RLSRCTAITTGEDGPIPRCKPFKYTYEKEIVMYAY 233

[Close]
BLAST of MELO3C004787 vs. NCBI nr
Match: gi|778670437|ref|XP_011649473.1| (PREDICTED: cytoplasmic tRNA 2-thiolation protein 1 [Cucumis sativus])

HSP 1 Score: 127.5 bits (319), Expect = 1.7e-26
Identity = 67/95 (70.53%), Postives = 76/95 (80.00%), Query Frame = 1 

Query: 33  VSEITRIIA--PNAPYSDGNMKEALDRGAALLKVVKLATRHNAIDMAETVLLDILRGDIA 92
           + EI ++I    N  +     ++ALDRGAALLKV KLAT HNA DMAETVLL+ILRGDIA
Sbjct: 138 MDEIVKMIGLKNNCTFCGVFRRQALDRGAALLKVDKLATGHNADDMAETVLLNILRGDIA 197

Query: 93  RLSRCTAISTDEDGPIPRCKPFKYTYEKKIVVYFY 126
           RLSRCTAI T EDGPIPRCKPFKYTYEK+IV+Y Y
Sbjct: 198 RLSRCTAIITGEDGPIPRCKPFKYTYEKEIVMYAY 232

[Close]
BLAST of MELO3C004787 vs. NCBI nr
Match: gi|1012342382|gb|KYP53576.1| (Cytoplasmic tRNA 2-thiolation protein 1 [Cajanus cajan])

HSP 1 Score: 126.7 bits (317), Expect = 2.9e-26
Identity = 67/115 (58.26%), Postives = 83/115 (72.17%), Query Frame = 1 

Query: 11  ALVSDRLLRHSNINVKVAVAACVSEITRIIAPNAPYSDGNMKEALDRGAALLKVVKLATR 70
           A V  +L RH N  + + + +    IT        Y D +++ ALDRGAALLKV KL T 
Sbjct: 74  AYVLSKLNRHHNYGLHLFLLSVDEGITG-------YRDDSLQTALDRGAALLKVDKLVTG 133

Query: 71  HNAIDMAETVLLDILRGDIARLSRCTAISTDEDGPIPRCKPFKYTYEKKIVVYFY 126
           HNA D+AETVLL++LRGD+ARLSRCT+I+T EDG IPRCKPFKYTYEK+IV+Y Y
Sbjct: 134 HNADDIAETVLLNLLRGDVARLSRCTSITTGEDGAIPRCKPFKYTYEKEIVIYPY 181

[Close]
BLAST of MELO3C004787 vs. NCBI nr
Match: gi|1009151299|ref|XP_015893480.1| (PREDICTED: cytoplasmic tRNA 2-thiolation protein 1 [Ziziphus jujuba])

HSP 1 Score: 126.7 bits (317), Expect = 2.9e-26
Identity = 62/74 (83.78%), Postives = 69/74 (93.24%), Query Frame = 1 

Query: 52  KEALDRGAALLKVVKLATRHNAIDMAETVLLDILRGDIARLSRCTAISTDEDGPIPRCKP 111
           ++ALDRGAALLKV KLAT HNA D+AETVLL+ILRGDIARLSRCTAI+T EDGPIPRCKP
Sbjct: 160 RQALDRGAALLKVDKLATGHNADDIAETVLLNILRGDIARLSRCTAITTGEDGPIPRCKP 219

Query: 112 FKYTYEKKIVVYFY 126
           FKYTYEK+IV+Y Y
Sbjct: 220 FKYTYEKEIVMYAY 233

[Close]
BLAST of MELO3C004787 vs. NCBI nr
Match: gi|659089053|ref|XP_008445303.1| (PREDICTED: cytoplasmic tRNA 2-thiolation protein 1 [Cucumis melo])

HSP 1 Score: 125.2 bits (313), Expect = 8.5e-26
Identity = 66/95 (69.47%), Postives = 75/95 (78.95%), Query Frame = 1 

Query: 33  VSEITRIIA--PNAPYSDGNMKEALDRGAALLKVVKLATRHNAIDMAETVLLDILRGDIA 92
           + EI ++I    N  +     ++ALDRGAA LKV KLAT HNA DMAETVLL+ILRGDIA
Sbjct: 138 MDEIVKMIGLKNNCTFCGVFRRQALDRGAAWLKVDKLATGHNADDMAETVLLNILRGDIA 197

Query: 93  RLSRCTAISTDEDGPIPRCKPFKYTYEKKIVVYFY 126
           RLSRCTAI T EDGPIPRCKPFKYTYEK+IV+Y Y
Sbjct: 198 RLSRCTAIITGEDGPIPRCKPFKYTYEKEIVMYAY 232

The following BLAST results are available for this feature:
BLAST of MELO3C004787 vs. Swiss-Prot
Match NameE-valueIdentityDescription
CTU1_ARATH7.0e-2867.37Cytoplasmic tRNA 2-thiolation protein 1 OS=Arabidopsis thaliana GN=NCS6 PE=2 SV=... [more]
CTU1_ORYSJ4.5e-2779.73Cytoplasmic tRNA 2-thiolation protein 1 OS=Oryza sativa subsp. japonica GN=NCS6 ... [more]
CTU1_XENLA4.4e-2266.22Cytoplasmic tRNA 2-thiolation protein 1 OS=Xenopus laevis GN=ctu1 PE=2 SV=1[more]
CTU1_DANRE1.3e-2167.11Cytoplasmic tRNA 2-thiolation protein 1 OS=Danio rerio GN=ctu1 PE=2 SV=1[more]
CTU1_XENTR2.8e-2164.86Cytoplasmic tRNA 2-thiolation protein 1 OS=Xenopus tropicalis GN=ctu1 PE=2 SV=1[more]
BLAST of MELO3C004787 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A059BW08_EUCGR7.0e-2770.53Cytoplasmic tRNA 2-thiolation protein 1 OS=Eucalyptus grandis GN=NCS6 PE=3 SV=1[more]
A0A0A0LKF0_CUCSA1.2e-2670.53Cytoplasmic tRNA 2-thiolation protein 1 OS=Cucumis sativus GN=NCS6 PE=3 SV=1[more]
A0A151SFJ5_CAJCA2.0e-2658.26Cytoplasmic tRNA 2-thiolation protein 1 OS=Cajanus cajan GN=KK1_024469 PE=4 SV=1[more]
A0A087GX57_ARAAL7.8e-2667.37Cytoplasmic tRNA 2-thiolation protein 1 OS=Arabis alpina GN=NCS6 PE=3 SV=1[more]
A0A067KKS9_JATCU7.8e-2667.37Cytoplasmic tRNA 2-thiolation protein 1 OS=Jatropha curcas GN=NCS6 PE=3 SV=1[more]
BLAST of MELO3C004787 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G76170.11.1e-2866.32 2-thiocytidine tRNA biosynthesis protein, TtcA[more]
AT2G44270.22.2e-2465.12 repressor of lrx1[more]
AT4G31880.12.6e-1264.00 LOCATED IN: cytosol, chloroplast[more]
AT1G80810.22.6e-0956.60 Tudor/PWWP/MBT superfamily protein[more]
AT5G47690.32.2e-0849.06 binding[more]
BLAST of MELO3C004787 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|702378815|ref|XP_010063105.1|1.0e-2670.53PREDICTED: cytoplasmic tRNA 2-thiolation protein 1 [Eucalyptus grandis][more]
gi|778670437|ref|XP_011649473.1|1.7e-2670.53PREDICTED: cytoplasmic tRNA 2-thiolation protein 1 [Cucumis sativus][more]
gi|1012342382|gb|KYP53576.1|2.9e-2658.26Cytoplasmic tRNA 2-thiolation protein 1 [Cajanus cajan][more]
gi|1009151299|ref|XP_015893480.1|2.9e-2683.78PREDICTED: cytoplasmic tRNA 2-thiolation protein 1 [Ziziphus jujuba][more]
gi|659089053|ref|XP_008445303.1|8.5e-2669.47PREDICTED: cytoplasmic tRNA 2-thiolation protein 1 [Cucumis melo][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0032447 protein urmylation
biological_process GO:0034227 tRNA thio-modification
biological_process GO:0002098 tRNA wobble uridine modification
biological_process GO:0008150 biological_process
cellular_component GO:0009507 chloroplast
cellular_component GO:0005737 cytoplasm
cellular_component GO:0005829 cytosol
cellular_component GO:0005575 cellular_component
molecular_function GO:0016779 nucleotidyltransferase activity
molecular_function GO:0000049 tRNA binding
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
MU56550melon EST collection version 4.0transcribed_cluster
Relationships

The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
MU56550MU56550transcribed_cluster


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C004787T2MELO3C004787T2mRNA
MELO3C004787T3MELO3C004787T3mRNA
MELO3C004787T1MELO3C004787T1mRNA


InterPro
Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR12663ANDROGEN INDUCED INHIBITOR OF PROLIFERATION AS3 / PDS5-RELATEDcoord: 1..101
score: 1.7
NoneNo IPR availablePANTHERPTHR12663:SF3ASPARTYL BETA-HYDROXYLASE N-TERMINAL REGION DOMAIN-CONTAINING PROTEIN-RELATEDcoord: 1..101
score: 1.7

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
MELO3C004787Bhi08G000076Wax gourdmewgoB174
MELO3C004787CSPI01G14370Wild cucumber (PI 183967)cpimeB011
MELO3C004787Lsi03G000940Bottle gourd (USVL1VR-Ls)lsimeB244
MELO3C004787CsaV3_1G014540Cucumber (Chinese Long) v3cucmeB010
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C004787Cucurbita pepo (Zucchini)cpemeB745
MELO3C004787Cucumber (Gy14) v2cgybmeB010
MELO3C004787Watermelon (97103) v2mewmbB143
MELO3C004787Cucumber (Gy14) v1cgymeB365
MELO3C004787Cucurbita maxima (Rimu)cmameB148
MELO3C004787Cucurbita maxima (Rimu)cmameB194
MELO3C004787Cucurbita moschata (Rifu)cmomeB138
MELO3C004787Cucurbita moschata (Rifu)cmomeB181
MELO3C004787Cucumber (Chinese Long) v2cumeB015
MELO3C004787Watermelon (Charleston Gray)mewcgB141
MELO3C004787Watermelon (97103) v1mewmB159