MELO3C004787T2 (mRNA) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C004787T2
Type	mRNA
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Cytoplasmic tRNA 2-thiolation protein 1
Location	chr12 : 10400727 .. 10401140 (-)
Sequence length	330

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTAATTGCGCTCACTCCATCACAGAATGCCTTGGTTTCTGATCGACTTCTTAGGCATTCAAATATTAATGTCAAAGTTGCAGTTGCAGCATGCGTTAGTGAAATAACTCGGATCATTGCACCTAATGCCCCTTACAGTGATGGAAATATGAAGGTAATCAGAAATTTGCTCGATTGAATGCCAATTTCCCACTTGTCGAATCTACTTCTAAAGAGTTGAATGTATGCTGCTGTTCAGGAGGTATTTCATCTTATAGTATCATCCTTTGAAAATCTCTCTGACAAGTCAAGTCGATCATATGTAAAATGCGCATCCATTCTTGAAACTGTTCCGAGGGTCAGATTATATGTGGCCATGCTGGATTTGGAATGTGATGCATTGATATGTTCCAACATTTCCTTAAGACAGTAA

mRNA sequence

ATGCTAATTGCGCTCACTCCATCACAGAATGCCTTGGTTTCTGATCGACTTCTTAGGCATTCAAATATTAATGTCAAAGTTGCAGTTGCAGCATGCGTTAGTGAAATAACTCGGATCATTGCACCTAATGCCCCTTACAGTGATGGAAATATGAAGGAGGTATTTCATCTTATAGTATCATCCTTTGAAAATCTCTCTGACAAGTCAAGTCGATCATATGTAAAATGCGCATCCATTCTTGAAACTGTTCCGAGGGTCAGATTATATGTGGCCATGCTGGATTTGGAATGTGATGCATTGATATGTTCCAACATTTCCTTAAGACAGTAA

Coding sequence (CDS)

ATGCTAATTGCGCTCACTCCATCACAGAATGCCTTGGTTTCTGATCGACTTCTTAGGCATTCAAATATTAATGTCAAAGTTGCAGTTGCAGCATGCGTTAGTGAAATAACTCGGATCATTGCACCTAATGCCCCTTACAGTGATGGAAATATGAAGGAGGTATTTCATCTTATAGTATCATCCTTTGAAAATCTCTCTGACAAGTCAAGTCGATCATATGTAAAATGCGCATCCATTCTTGAAACTGTTCCGAGGGTCAGATTATATGTGGCCATGCTGGATTTGGAATGTGATGCATTGATATGTTCCAACATTTCCTTAAGACAGTAA

Protein sequence

MLIALTPSQNALVSDRLLRHSNINVKVAVAACVSEITRIIAPNAPYSDGNMKEVFHLIVSSFENLSDKSSRSYVKCASILETVPRVRLYVAMLDLECDALICSNISLRQ*

Homology

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BLAST of MELO3C004787T2 vs. Swiss-Prot
Match: PDS5_YEAST (Sister chromatid cohesion protein PDS5 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PDS5 PE=1 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 1.7e-11
Identity = 31/94 (32.98%), Postives = 56/94 (59.57%), Query Frame = 1


Query: 2   LIALTPSQNALVSDRLLRHSNINVKVAVAACVSEITRIIAPNAPYSDGNMKEVFHLIVSS 61
           L  L   ++ALVS +LL+H ++ ++   A C+S+I R+ AP+APY+D  + ++F L++S 
Sbjct: 49  LTGLDKYRDALVSRKLLKHKDVGIRAFTACCLSDILRLYAPDAPYTDAQLTDIFKLVLSQ 108

Query: 62  FENLSDKSSRSYVKCASILETVPRVRLYVAMLDL 96
           FE L D+ +  +++   ++  +   R  V + DL
Sbjct: 109 FEQLGDQENGYHIQQTYLITKLLEYRSIVLLADL 142

[Close]

BLAST of MELO3C004787T2 vs. Swiss-Prot
Match: PD5BB_XENLA (Sister chromatid cohesion protein PDS5 homolog B-B OS=Xenopus laevis GN=pds5b-b PE=2 SV=2)

HSP 1 Score: 55.8 bits (133), Expect = 3.4e-07
Identity = 30/86 (34.88%), Postives = 46/86 (53.49%), Query Frame = 1


Query: 12  LVSDRLLRHSNINVKVAVAACVSEITRIIAPNAPY-SDGNMKEVFHLIVSSFENLSDKSS 71
           L SD  L+H + +V++ VA C+++I RI AP APY S   +K++F  I    + L D  S
Sbjct: 63  LASDFFLKHPDKDVRLLVACCLADIFRIYAPEAPYTSPDKLKDIFMFITRQLKGLEDTKS 122

Query: 72  RSYVKCASILETVPRVRLYVAMLDLE 97
             + +   +LE +  V+ Y    +LE
Sbjct: 123 PQFNRYFYLLENIAWVKSYNICFELE 148

[Close]

BLAST of MELO3C004787T2 vs. Swiss-Prot
Match: PDS5B_CHICK (Sister chromatid cohesion protein PDS5 homolog B OS=Gallus gallus GN=PDS5B PE=2 SV=3)

HSP 1 Score: 55.8 bits (133), Expect = 3.4e-07
Identity = 30/86 (34.88%), Postives = 46/86 (53.49%), Query Frame = 1


Query: 12  LVSDRLLRHSNINVKVAVAACVSEITRIIAPNAPY-SDGNMKEVFHLIVSSFENLSDKSS 71
           L SD  L+H + +V++ VA C+++I RI AP APY S   +K++F  I    + L D  S
Sbjct: 63  LASDFFLKHPDKDVRLLVACCLADIFRIYAPEAPYTSPDKLKDIFMFITRQLKGLEDTKS 122

Query: 72  RSYVKCASILETVPRVRLYVAMLDLE 97
             + +   +LE +  V+ Y    +LE
Sbjct: 123 PQFNRYFYLLENIAWVKSYNICFELE 148

[Close]

BLAST of MELO3C004787T2 vs. Swiss-Prot
Match: PDS5B_HUMAN (Sister chromatid cohesion protein PDS5 homolog B OS=Homo sapiens GN=PDS5B PE=1 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 3.4e-07
Identity = 30/86 (34.88%), Postives = 46/86 (53.49%), Query Frame = 1


Query: 12  LVSDRLLRHSNINVKVAVAACVSEITRIIAPNAPY-SDGNMKEVFHLIVSSFENLSDKSS 71
           L SD  L+H + +V++ VA C+++I RI AP APY S   +K++F  I    + L D  S
Sbjct: 63  LASDFFLKHPDKDVRLLVACCLADIFRIYAPEAPYTSPDKLKDIFMFITRQLKGLEDTKS 122

Query: 72  RSYVKCASILETVPRVRLYVAMLDLE 97
             + +   +LE +  V+ Y    +LE
Sbjct: 123 PQFNRYFYLLENIAWVKSYNICFELE 148

[Close]

BLAST of MELO3C004787T2 vs. Swiss-Prot
Match: PDS5B_MOUSE (Sister chromatid cohesion protein PDS5 homolog B OS=Mus musculus GN=Pds5b PE=1 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 3.4e-07
Identity = 30/86 (34.88%), Postives = 46/86 (53.49%), Query Frame = 1


Query: 12  LVSDRLLRHSNINVKVAVAACVSEITRIIAPNAPY-SDGNMKEVFHLIVSSFENLSDKSS 71
           L SD  L+H + +V++ VA C+++I RI AP APY S   +K++F  I    + L D  S
Sbjct: 63  LASDFFLKHPDKDVRLLVACCLADIFRIYAPEAPYTSPDKLKDIFMFITRQLKGLEDTKS 122

Query: 72  RSYVKCASILETVPRVRLYVAMLDLE 97
             + +   +LE +  V+ Y    +LE
Sbjct: 123 PQFNRYFYLLENIAWVKSYNICFELE 148

[Close]

BLAST of MELO3C004787T2 vs. TrEMBL
Match: A0A0A0LM52_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G382630 PE=4 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 1.0e-34
Identity = 81/101 (80.20%), Postives = 88/101 (87.13%), Query Frame = 1


Query: 1   MLIALTPSQNALVSDRLLRHSNINVKVAVAACVSEITRIIAPNAPYSDGNMKEVFHLIVS 60
           M IALTPS  ALVSD+LLRHSNI+VKV+VAAC+SEITRI AP+APYSD  MKEVFHLIVS
Sbjct: 51  MQIALTPSLKALVSDQLLRHSNIDVKVSVAACISEITRITAPDAPYSDDQMKEVFHLIVS 110

Query: 61  SFENLSDKSSRSYVKCASILETVPRVRLYVAMLDLECDALI 102
           SFE+LSDKSSRSY K ASILETV +VR  V MLDLECD LI
Sbjct: 111 SFEDLSDKSSRSYAKRASILETVAKVRSCVVMLDLECDGLI 151

[Close]

BLAST of MELO3C004787T2 vs. TrEMBL
Match: B9IL45_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0018s02410g PE=4 SV=2)

HSP 1 Score: 151.0 bits (380), Expect = 8.5e-34
Identity = 78/98 (79.59%), Postives = 86/98 (87.76%), Query Frame = 1


Query: 4   ALTPSQNALVSDRLLRHSNINVKVAVAACVSEITRIIAPNAPYSDGNMKEVFHLIVSSFE 63
           AL+PSQNALV+D+L RHSNI+VKVAVA+C+SEITRI AP+APY D  MKEVF LIVSSFE
Sbjct: 4   ALSPSQNALVTDQLFRHSNIDVKVAVASCISEITRITAPDAPYDDDQMKEVFQLIVSSFE 63

Query: 64  NLSDKSSRSYVKCASILETVPRVRLYVAMLDLECDALI 102
           NL DKSSRSYVK ASILETV +VR  V MLDLECDALI
Sbjct: 64  NLDDKSSRSYVKRASILETVAKVRSCVVMLDLECDALI 101

[Close]

BLAST of MELO3C004787T2 vs. TrEMBL
Match: U5GCA6_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s27920g PE=4 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 2.5e-33
Identity = 77/98 (78.57%), Postives = 86/98 (87.76%), Query Frame = 1


Query: 4   ALTPSQNALVSDRLLRHSNINVKVAVAACVSEITRIIAPNAPYSDGNMKEVFHLIVSSFE 63
           AL+PSQNALV+D+L RHSNI+VKVAVA+C+SEITRI AP+APY D  MKEVF LIVSSFE
Sbjct: 56  ALSPSQNALVTDQLFRHSNIDVKVAVASCISEITRITAPDAPYDDDRMKEVFQLIVSSFE 115

Query: 64  NLSDKSSRSYVKCASILETVPRVRLYVAMLDLECDALI 102
           NL DKSS+SYVK ASILETV +VR  V MLDLECDALI
Sbjct: 116 NLDDKSSQSYVKRASILETVAKVRSCVVMLDLECDALI 153

[Close]

BLAST of MELO3C004787T2 vs. TrEMBL
Match: U5GEP3_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s27920g PE=4 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 2.5e-33
Identity = 77/98 (78.57%), Postives = 86/98 (87.76%), Query Frame = 1


Query: 4   ALTPSQNALVSDRLLRHSNINVKVAVAACVSEITRIIAPNAPYSDGNMKEVFHLIVSSFE 63
           AL+PSQNALV+D+L RHSNI+VKVAVA+C+SEITRI AP+APY D  MKEVF LIVSSFE
Sbjct: 56  ALSPSQNALVTDQLFRHSNIDVKVAVASCISEITRITAPDAPYDDDRMKEVFQLIVSSFE 115

Query: 64  NLSDKSSRSYVKCASILETVPRVRLYVAMLDLECDALI 102
           NL DKSS+SYVK ASILETV +VR  V MLDLECDALI
Sbjct: 116 NLDDKSSQSYVKRASILETVAKVRSCVVMLDLECDALI 153

[Close]

BLAST of MELO3C004787T2 vs. TrEMBL
Match: U5GCB0_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s27920g PE=4 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 2.5e-33
Identity = 77/98 (78.57%), Postives = 86/98 (87.76%), Query Frame = 1


Query: 4   ALTPSQNALVSDRLLRHSNINVKVAVAACVSEITRIIAPNAPYSDGNMKEVFHLIVSSFE 63
           AL+PSQNALV+D+L RHSNI+VKVAVA+C+SEITRI AP+APY D  MKEVF LIVSSFE
Sbjct: 56  ALSPSQNALVTDQLFRHSNIDVKVAVASCISEITRITAPDAPYDDDRMKEVFQLIVSSFE 115

Query: 64  NLSDKSSRSYVKCASILETVPRVRLYVAMLDLECDALI 102
           NL DKSS+SYVK ASILETV +VR  V MLDLECDALI
Sbjct: 116 NLDDKSSQSYVKRASILETVAKVRSCVVMLDLECDALI 153

[Close]

BLAST of MELO3C004787T2 vs. TAIR10
Match: AT4G31880.1 (AT4G31880.1 LOCATED IN: cytosol, chloroplast)

HSP 1 Score: 132.1 bits (331), Expect = 2.1e-31
Identity = 68/98 (69.39%), Postives = 76/98 (77.55%), Query Frame = 1


Query: 4   ALTPSQNALVSDRLLRHSNINVKVAVAACVSEITRIIAPNAPYSDGNMKEVFHLIVSSFE 63
           ALTP    LV  +L +HS+++VKVAVAAC+SEITRI AP+APY D  MKEVF LIVSSFE
Sbjct: 54  ALTPLMKGLVGGKLFKHSDVDVKVAVAACISEITRITAPDAPYDDDQMKEVFKLIVSSFE 113

Query: 64  NLSDKSSRSYVKCASILETVPRVRLYVAMLDLECDALI 102
           +L DKSSRSY K  SILETV +VR  V MLDLECDAL+
Sbjct: 114 DLVDKSSRSYAKRISILETVAKVRSCVVMLDLECDALL 151

[Close]

BLAST of MELO3C004787T2 vs. TAIR10
Match: AT1G15940.1 (AT1G15940.1 Tudor/PWWP/MBT superfamily protein)

HSP 1 Score: 103.2 bits (256), Expect = 1.0e-22
Identity = 52/98 (53.06%), Postives = 68/98 (69.39%), Query Frame = 1


Query: 4   ALTPSQNALVSDRLLRHSNINVKVAVAACVSEITRIIAPNAPYSDGNMKEVFHLIVSSFE 63
           AL P   ALVS  LLR+ + +V+V+V +C++EI RI AP APY+D  MK++F + + +FE
Sbjct: 58  ALHPPMRALVSADLLRNPDSDVRVSVVSCLTEIMRITAPEAPYNDEQMKDIFQVTIEAFE 117

Query: 64  NLSDKSSRSYVKCASILETVPRVRLYVAMLDLECDALI 102
            L+D SSRSY K   ILETV +VR  + MLDLECD L+
Sbjct: 118 KLADASSRSYRKAEVILETVAKVRSSLVMLDLECDDLV 155

[Close]

BLAST of MELO3C004787T2 vs. TAIR10
Match: AT1G80810.2 (AT1G80810.2 Tudor/PWWP/MBT superfamily protein)

HSP 1 Score: 102.8 bits (255), Expect = 1.4e-22
Identity = 53/101 (52.48%), Postives = 68/101 (67.33%), Query Frame = 1


Query: 1   MLIALTPSQNALVSDRLLRHSNINVKVAVAACVSEITRIIAPNAPYSDGNMKEVFHLIVS 60
           M  AL PS+NALVS  LL H + +V+V+V +C++EI RI AP  PYSD  MKE+F L + 
Sbjct: 1   MQSALIPSRNALVSVDLLSHPDSDVRVSVVSCLTEIVRITAPETPYSDDLMKEIFRLTIE 60

Query: 61  SFENLSDKSSRSYVKCASILETVPRVRLYVAMLDLECDALI 102
           +FE L+D SSRSY K   +L+ V +V+  + MLDLEC  LI
Sbjct: 61  AFEKLADASSRSYKKAEFVLDNVAKVKSCLVMLDLECYDLI 101

[Close]

BLAST of MELO3C004787T2 vs. TAIR10
Match: AT5G47690.3 (AT5G47690.3 binding)

HSP 1 Score: 99.8 bits (247), Expect = 1.1e-21
Identity = 51/101 (50.50%), Postives = 68/101 (67.33%), Query Frame = 1


Query: 1   MLIALTPSQNALVSDRLLRHSNINVKVAVAACVSEITRIIAPNAPYSDGNMKEVFHLIVS 60
           +L ++ P  +A++   +L H + +VK+ VA+CVSEITRI AP APYSD  MK++F LIVS
Sbjct: 48  VLKSIQPFLDAVIKPEILNHQDKDVKLLVASCVSEITRITAPEAPYSDNIMKDIFQLIVS 107

Query: 61  SFENLSDKSSRSYVKCASILETVPRVRLYVAMLDLECDALI 102
           +F  L+D S  S+ +   ILETV + R  V MLDLECD L+
Sbjct: 108 AFAGLNDVSGPSFGRRVLILETVAKYRSCVVMLDLECDDLV 148

[Close]

BLAST of MELO3C004787T2 vs. TAIR10
Match: AT1G77600.3 (AT1G77600.3 ARM repeat superfamily protein)

HSP 1 Score: 76.3 bits (186), Expect = 1.4e-14
Identity = 36/97 (37.11%), Postives = 59/97 (60.82%), Query Frame = 1


Query: 5   LTPSQNALVSDRLLRHSNINVKVAVAACVSEITRIIAPNAPYSDGNMKEVFHLIVSSFEN 64
           L P + +++   LL++ + +V + V  CVSE+ RI+AP+ P+ D  ++++F L ++ F  
Sbjct: 60  LRPLKKSIIKHALLKNRDNDVSLLVTVCVSELFRILAPHLPFEDEYLRDIFTLFIAEFSE 119

Query: 65  LSDKSSRSYVKCASILETVPRVRLYVAMLDLECDALI 102
           LSD  S  + K A ILETV R++  + MLD +C  L+
Sbjct: 120 LSDTVSPYFSKRAKILETVSRLKFCLLMLDEDCQDLV 156

[Close]

BLAST of MELO3C004787T2 vs. NCBI nr
Match: gi|778672647|ref|XP_011649845.1| (PREDICTED: muscle M-line assembly protein unc-89 [Cucumis sativus])

HSP 1 Score: 154.1 bits (388), Expect = 1.4e-34
Identity = 81/101 (80.20%), Postives = 88/101 (87.13%), Query Frame = 1


Query: 1   MLIALTPSQNALVSDRLLRHSNINVKVAVAACVSEITRIIAPNAPYSDGNMKEVFHLIVS 60
           M IALTPS  ALVSD+LLRHSNI+VKV+VAAC+SEITRI AP+APYSD  MKEVFHLIVS
Sbjct: 51  MQIALTPSLKALVSDQLLRHSNIDVKVSVAACISEITRITAPDAPYSDDQMKEVFHLIVS 110

Query: 61  SFENLSDKSSRSYVKCASILETVPRVRLYVAMLDLECDALI 102
           SFE+LSDKSSRSY K ASILETV +VR  V MLDLECD LI
Sbjct: 111 SFEDLSDKSSRSYAKRASILETVAKVRSCVVMLDLECDGLI 151

[Close]

BLAST of MELO3C004787T2 vs. NCBI nr
Match: gi|743882153|ref|XP_011036667.1| (PREDICTED: nucleolar and coiled-body phosphoprotein 1 isoform X2 [Populus euphratica])

HSP 1 Score: 151.0 bits (380), Expect = 1.2e-33
Identity = 78/98 (79.59%), Postives = 86/98 (87.76%), Query Frame = 1


Query: 4   ALTPSQNALVSDRLLRHSNINVKVAVAACVSEITRIIAPNAPYSDGNMKEVFHLIVSSFE 63
           AL+PSQNALV+D+L RHSNI+VKVAVA+C+SEITRI AP+APY D  MKEVF LIVSSFE
Sbjct: 56  ALSPSQNALVTDQLFRHSNIDVKVAVASCISEITRITAPDAPYDDDQMKEVFQLIVSSFE 115

Query: 64  NLSDKSSRSYVKCASILETVPRVRLYVAMLDLECDALI 102
           NL DKSSRSYVK ASILETV +VR  V MLDLECDALI
Sbjct: 116 NLDDKSSRSYVKRASILETVAKVRSCVVMLDLECDALI 153

[Close]

BLAST of MELO3C004787T2 vs. NCBI nr
Match: gi|566213840|ref|XP_002324323.2| (hypothetical protein POPTR_0018s02410g [Populus trichocarpa])

HSP 1 Score: 151.0 bits (380), Expect = 1.2e-33
Identity = 78/98 (79.59%), Postives = 86/98 (87.76%), Query Frame = 1


Query: 4   ALTPSQNALVSDRLLRHSNINVKVAVAACVSEITRIIAPNAPYSDGNMKEVFHLIVSSFE 63
           AL+PSQNALV+D+L RHSNI+VKVAVA+C+SEITRI AP+APY D  MKEVF LIVSSFE
Sbjct: 4   ALSPSQNALVTDQLFRHSNIDVKVAVASCISEITRITAPDAPYDDDQMKEVFQLIVSSFE 63

Query: 64  NLSDKSSRSYVKCASILETVPRVRLYVAMLDLECDALI 102
           NL DKSSRSYVK ASILETV +VR  V MLDLECDALI
Sbjct: 64  NLDDKSSRSYVKRASILETVAKVRSCVVMLDLECDALI 101

[Close]

BLAST of MELO3C004787T2 vs. NCBI nr
Match: gi|743882149|ref|XP_011036666.1| (PREDICTED: nucleolar and coiled-body phosphoprotein 1 isoform X1 [Populus euphratica])

HSP 1 Score: 151.0 bits (380), Expect = 1.2e-33
Identity = 78/98 (79.59%), Postives = 86/98 (87.76%), Query Frame = 1


Query: 4   ALTPSQNALVSDRLLRHSNINVKVAVAACVSEITRIIAPNAPYSDGNMKEVFHLIVSSFE 63
           AL+PSQNALV+D+L RHSNI+VKVAVA+C+SEITRI AP+APY D  MKEVF LIVSSFE
Sbjct: 56  ALSPSQNALVTDQLFRHSNIDVKVAVASCISEITRITAPDAPYDDDQMKEVFQLIVSSFE 115

Query: 64  NLSDKSSRSYVKCASILETVPRVRLYVAMLDLECDALI 102
           NL DKSSRSYVK ASILETV +VR  V MLDLECDALI
Sbjct: 116 NLDDKSSRSYVKRASILETVAKVRSCVVMLDLECDALI 153

[Close]

BLAST of MELO3C004787T2 vs. NCBI nr
Match: gi|659088976|ref|XP_008445261.1| (PREDICTED: dentin sialophosphoprotein [Cucumis melo])

HSP 1 Score: 150.6 bits (379), Expect = 1.6e-33
Identity = 78/101 (77.23%), Postives = 88/101 (87.13%), Query Frame = 1


Query: 1   MLIALTPSQNALVSDRLLRHSNINVKVAVAACVSEITRIIAPNAPYSDGNMKEVFHLIVS 60
           M +ALTPS  ALVSD+LLRHS+I+VKV+VAAC+SEITRI AP+APY+D  MKEVFHLIVS
Sbjct: 51  MQVALTPSLKALVSDQLLRHSDIDVKVSVAACISEITRITAPDAPYNDEQMKEVFHLIVS 110

Query: 61  SFENLSDKSSRSYVKCASILETVPRVRLYVAMLDLECDALI 102
           SFENLS+KSSRSY K ASILETV +VR  V MLDLECD LI
Sbjct: 111 SFENLSEKSSRSYAKRASILETVAKVRSCVVMLDLECDGLI 151

The following BLAST results are available for this feature:

BLAST of MELO3C004787T2 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PDS5_YEAST	1.7e-11	32.98	Sister chromatid cohesion protein PDS5 OS=Saccharomyces cerevisiae (strain ATCC ...	[more]
PD5BB_XENLA	3.4e-07	34.88	Sister chromatid cohesion protein PDS5 homolog B-B OS=Xenopus laevis GN=pds5b-b ...	[more]
PDS5B_CHICK	3.4e-07	34.88	Sister chromatid cohesion protein PDS5 homolog B OS=Gallus gallus GN=PDS5B PE=2 ...	[more]
PDS5B_HUMAN	3.4e-07	34.88	Sister chromatid cohesion protein PDS5 homolog B OS=Homo sapiens GN=PDS5B PE=1 S...	[more]
PDS5B_MOUSE	3.4e-07	34.88	Sister chromatid cohesion protein PDS5 homolog B OS=Mus musculus GN=Pds5b PE=1 S...	[more]

BLAST of MELO3C004787T2 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LM52_CUCSA	1.0e-34	80.20	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G382630 PE=4 SV=1	[more]
B9IL45_POPTR	8.5e-34	79.59	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0018s02410g PE=4 SV=2	[more]
U5GCA6_POPTR	2.5e-33	78.57	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s27920g PE=4 SV=1	[more]
U5GEP3_POPTR	2.5e-33	78.57	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s27920g PE=4 SV=1	[more]
U5GCB0_POPTR	2.5e-33	78.57	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s27920g PE=4 SV=1	[more]

BLAST of MELO3C004787T2 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G31880.1	2.1e-31	69.39	LOCATED IN: cytosol, chloroplast	[more]
AT1G15940.1	1.0e-22	53.06	Tudor/PWWP/MBT superfamily protein	[more]
AT1G80810.2	1.4e-22	52.48	Tudor/PWWP/MBT superfamily protein	[more]
AT5G47690.3	1.1e-21	50.50	binding	[more]
AT1G77600.3	1.4e-14	37.11	ARM repeat superfamily protein	[more]

BLAST of MELO3C004787T2 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778672647\|ref\|XP_011649845.1\|	1.4e-34	80.20	PREDICTED: muscle M-line assembly protein unc-89 [Cucumis sativus]	[more]
gi\|743882153\|ref\|XP_011036667.1\|	1.2e-33	79.59	PREDICTED: nucleolar and coiled-body phosphoprotein 1 isoform X2 [Populus euphra...	[more]
gi\|566213840\|ref\|XP_002324323.2\|	1.2e-33	79.59	hypothetical protein POPTR_0018s02410g [Populus trichocarpa]	[more]
gi\|743882149\|ref\|XP_011036666.1\|	1.2e-33	79.59	PREDICTED: nucleolar and coiled-body phosphoprotein 1 isoform X1 [Populus euphra...	[more]
gi\|659088976\|ref\|XP_008445261.1\|	1.6e-33	77.23	PREDICTED: dentin sialophosphoprotein [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032447	protein urmylation
biological_process	GO:0034227	tRNA thio-modification
biological_process	GO:0002098	tRNA wobble uridine modification
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005829	cytosol
molecular_function	GO:0016779	nucleotidyltransferase activity
molecular_function	GO:0000049	tRNA binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C004787	MELO3C004787	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MELO3C004787T2	MELO3C004787T2-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C004787T2.cds2	MELO3C004787T2.cds2	CDS
MELO3C004787T2.cds1	MELO3C004787T2.cds1	CDS

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR12663	ANDROGEN INDUCED INHIBITOR OF PROLIFERATION AS3 / PDS5-RELATED	coord: 1..101 score: 1.7
None	No IPR available	PANTHER	PTHR12663:SF3	ASPARTYL BETA-HYDROXYLASE N-TERMINAL REGION DOMAIN-CONTAINING PROTEIN-RELATED	coord: 1..101 score: 1.7