MELO3C004625 (gene) Melon (DHL92) v3.5.1

NameMELO3C004625
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionATP-dependent Clp protease proteolytic subunit
Locationchr5 : 28044151 .. 28044663 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGGAATCGCGGAACACCCATGAGTTTGTTCGGACCGAGGCGTCCACGGAGAAGAGGCAGCGACCTGCCGCCGAGGATATGGACGACGACATTCTGGCTTGGATTTCTTTGGAAGAAGAGACAGTAGGCGAACTCATGATGCTTCTGGACGATGAGGAGAAAAGCCGTCCGGTGGAGGAGAAAGTTAAGTTCATAGAGGATCCCTACTCATCGGCCGTTATTTTTCAATCCTCTTCGTCGTACGTGACTATCAACGGAAACGAAGAGAGTTGTGGTTCGTCTTTCTCTGAATCGGACTCGTCGATGATGGCGAGCGTCGACATGAACGGAGCAAGGATTAAAGTGATGGAAATCGATAGTGAAACTGTTGAGAAATGGAAGATGTGGAGCGAGGATGGGTTGATGAAGGAGGAAGAGGAAGAGGAGGTGTCGGGTGTATTGGACGGAATCATCAGTTGGGATGAAGATGATTTAGCGAGGTTCGTCGGCGATGAAGAACAGATAATCTGA

mRNA sequence

ATGGAGGAATCGCGGAACACCCATGAGTTTGTTCGGACCGAGGCGTCCACGGAGAAGAGGCAGCGACCTGCCGCCGAGGATATGGACGACGACATTCTGGCTTGGATTTCTTTGGAAGAAGAGACAGTAGGCGAACTCATGATGCTTCTGGACGATGAGGAGAAAAGCCGTCCGGTGGAGGAGAAAGTTAAGTTCATAGAGGATCCCTACTCATCGGCCGTTATTTTTCAATCCTCTTCGTCGTACGTGACTATCAACGGAAACGAAGAGAGTTGTGGTTCGTCTTTCTCTGAATCGGACTCGTCGATGATGGCGAGCGTCGACATGAACGGAGCAAGGATTAAAGTGATGGAAATCGATAGTGAAACTGTTGAGAAATGGAAGATGTGGAGCGAGGATGGGTTGATGAAGGAGGAAGAGGAAGAGGAGGTGTCGGGTGTATTGGACGGAATCATCAGTTGGGATGAAGATGATTTAGCGAGGTTCGTCGGCGATGAAGAACAGATAATCTGA

Coding sequence (CDS)

ATGGAGGAATCGCGGAACACCCATGAGTTTGTTCGGACCGAGGCGTCCACGGAGAAGAGGCAGCGACCTGCCGCCGAGGATATGGACGACGACATTCTGGCTTGGATTTCTTTGGAAGAAGAGACAGTAGGCGAACTCATGATGCTTCTGGACGATGAGGAGAAAAGCCGTCCGGTGGAGGAGAAAGTTAAGTTCATAGAGGATCCCTACTCATCGGCCGTTATTTTTCAATCCTCTTCGTCGTACGTGACTATCAACGGAAACGAAGAGAGTTGTGGTTCGTCTTTCTCTGAATCGGACTCGTCGATGATGGCGAGCGTCGACATGAACGGAGCAAGGATTAAAGTGATGGAAATCGATAGTGAAACTGTTGAGAAATGGAAGATGTGGAGCGAGGATGGGTTGATGAAGGAGGAAGAGGAAGAGGAGGTGTCGGGTGTATTGGACGGAATCATCAGTTGGGATGAAGATGATTTAGCGAGGTTCGTCGGCGATGAAGAACAGATAATCTGA

Protein sequence

MEESRNTHEFVRTEASTEKRQRPAAEDMDDDILAWISLEEETVGELMMLLDDEEKSRPVEEKVKFIEDPYSSAVIFQSSSSYVTINGNEESCGSSFSESDSSMMASVDMNGARIKVMEIDSETVEKWKMWSEDGLMKEEEEEEVSGVLDGIISWDEDDLARFVGDEEQII*
BLAST of MELO3C004625 vs. TrEMBL
Match: A0A0A0LIN0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G000450 PE=4 SV=1)

HSP 1 Score: 287.3 bits (734), Expect = 1.2e-74
Identity = 147/167 (88.02%), Postives = 155/167 (92.81%), Query Frame = 1

Query: 1   MEESRNTHEFVRTEASTEKRQRPAAEDMDDDILAWISLEEETVGELMMLLDDEEKSRPVE 60
           MEESR TH+FVRTEASTEK      EDMDDDILAWISLE+ETVGELMMLLDDEEKSRPVE
Sbjct: 1   MEESRKTHDFVRTEASTEK-----TEDMDDDILAWISLEDETVGELMMLLDDEEKSRPVE 60

Query: 61  EKVKFIEDPYSSAVIFQSSSSYVTINGNEESCGSSFSESDSSMMASVDMNGARIKVMEID 120
           EKVKFIEDPYSSAV+FQSSSSYVTINGNEESCGSSFSESDSSMMASVDMNGARIKVMEID
Sbjct: 61  EKVKFIEDPYSSAVVFQSSSSYVTINGNEESCGSSFSESDSSMMASVDMNGARIKVMEID 120

Query: 121 SETVEKWKMWSEDGLMKEEEEEEVSGVLDGIISWDEDDLARFVGDEE 168
            ETV+KWKMWSE+ LMK  EEEEVSGV +GI+SWDEDDLARF+GDEE
Sbjct: 121 CETVDKWKMWSEERLMK--EEEEVSGVSEGIMSWDEDDLARFIGDEE 160

BLAST of MELO3C004625 vs. TrEMBL
Match: A0A0D2LT56_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G011900 PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 1.1e-27
Identity = 83/186 (44.62%), Postives = 113/186 (60.75%), Query Frame = 1

Query: 1   MEESRNTHEFVRTEASTEKRQRPAAEDMD----DDILAWISLE----EETVGELMMLLDD 60
           ME+ R T E    E+   KR+R A E ++    DD+L W+S+E     + + EL  L+DD
Sbjct: 1   MEKKRATEEDTGDESPATKRRREAPETVEFNGYDDVLPWLSMEGTCKTDAMSELFKLVDD 60

Query: 61  EEKSRPVEE--------KVKFIEDPYSSAVIFQSSSSYVTINGNEESCGSSFSESDSSMM 120
             +  P           KVKF ++PYSSA+IFQSSSSYVTINGNEESCGSSFS+S+SS+M
Sbjct: 61  STELAPSSTCSPTSYCTKVKFSDNPYSSALIFQSSSSYVTINGNEESCGSSFSDSESSVM 120

Query: 121 ASVDMNGARIKVMEIDS--ETVEKWKMWSEDGLM--KEEEEEEVSGVLDGIISWDEDDLA 167
           ASVDM G     ++ D+  E +  W + +E+G    K E E   +  +D    WDE+ LA
Sbjct: 121 ASVDMRGIVSTNVKFDNGLEEIRGW-LEAEEGSAWGKSEGESRETWTVDW--EWDEEQLA 180

BLAST of MELO3C004625 vs. TrEMBL
Match: A0A061GTJ0_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_037661 PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 6.0e-26
Identity = 71/171 (41.52%), Postives = 106/171 (61.99%), Query Frame = 1

Query: 16  STEKRQRPAAEDMDDDILAWISLEE---ETVGELMMLLDDEEKSRPVEE----------- 75
           ++++ +    +++ DD+ AW+S+E+   ++V EL+ LLDD  +                 
Sbjct: 21  ASKRLRETVTDELADDVKAWLSVEDSETDSVSELLKLLDDSPEDTTSASSSTSSPTLFGM 80

Query: 76  KVKFIEDPYSSAVIFQSSSSYVTINGNEESCGSSFSESDSSMMASVDMNGARIKVMEIDS 135
           +V+F ++PYSSA+IFQSSSSY+TINGNEESCGSSFSES+SS+MASVDM G     +++ S
Sbjct: 81  RVRFSDNPYSSALIFQSSSSYITINGNEESCGSSFSESESSVMASVDMGGILNANVKVGS 140

Query: 136 --ETVEKWKMWSEDGLMKEEEEEEVSG-VLDGIISWDEDDLARFVGDEEQI 170
             E +  W      G   +  EEE  G ++D    WDE  L RF+G+EE++
Sbjct: 141 RLEGIRGWVEAEGGGGAWDRSEEEARGWMMDWEWEWDEKQLVRFLGEEEEL 191

BLAST of MELO3C004625 vs. TrEMBL
Match: A0A068U4E3_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00041663001 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 8.1e-23
Identity = 69/163 (42.33%), Postives = 98/163 (60.12%), Query Frame = 1

Query: 1   MEESRNTHEFVRTEASTE------KRQRPAAEDMDDDI--LAWISLEEETVGELMMLLDD 60
           MEE   T +   TE   +      + +    +D DD +  LAW++ +++TV EL  LLD 
Sbjct: 1   MEEEEGTGKRQTTECDYDVVRKKLRTEGDGDQDQDDVMASLAWLAFDDQTVTELSELLDS 60

Query: 61  ---EEKSRPVEE---KVKFIEDPYSSAVIFQSSSSYVTINGNEESCGSSFSESDSSMMAS 120
              E  S   ++   KV+FIEDPY + VIFQSSS+YVTINGNEESCGSS+S+SDS++MAS
Sbjct: 61  SSLEASSSSAQQFNVKVRFIEDPYMTPVIFQSSSAYVTINGNEESCGSSYSDSDSTVMAS 120

Query: 121 VDMNGARIKV----MEIDSETVEKWKMWSEDGLMKEEEEEEVS 146
           VDM   R+ +     E++ +  +    W  D   +EEEEE ++
Sbjct: 121 VDMGSFRVALRKLARELNVDETDSRGAWGSDAAAEEEEEEVIA 163

BLAST of MELO3C004625 vs. TrEMBL
Match: V4UQI5_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10010560mg PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 1.8e-22
Identity = 69/158 (43.67%), Postives = 97/158 (61.39%), Query Frame = 1

Query: 27  DMDDDILAWISLEEETVGELMMLLD----DEEKSRPVEEKVKFIEDPYSSAVIFQSSSSY 86
           D+ DDI+AW+S++++T+ +LM LLD    + + +     +VKFI++PY S VIFQSSSSY
Sbjct: 40  DLGDDIMAWLSMDDDTMSQLMNLLDTSPPNADSATARTTRVKFIDNPYKSLVIFQSSSSY 99

Query: 87  VTINGNEESCGSSFSESDSSMMASVDMNGARIKVMEIDSETVEKWKMWSEDGLMKEEEEE 146
           VTINGNEESCGSSFS+S+SS+M SVD  G         S+   +   WS +     EEE+
Sbjct: 100 VTINGNEESCGSSFSDSESSVMVSVDTAGIVKSFPTRGSQRDCEVSAWSSN-----EEEK 159

Query: 147 EVSG----------VLDGIISWDEDD--LARFVGDEEQ 169
           EV G          ++DG    D DD  L +F+  E++
Sbjct: 160 EVGGFGFFEGEGGEIMDGCDGSDLDDYVLPKFLVQEQE 192

BLAST of MELO3C004625 vs. TAIR10
Match: AT5G56880.1 (AT5G56880.1 unknown protein)

HSP 1 Score: 86.7 bits (213), Expect = 1.6e-17
Identity = 54/140 (38.57%), Postives = 74/140 (52.86%), Query Frame = 1

Query: 39  EEETVGELMMLLDDEEKSRPVEE------------KVKFIEDPYSSAVIFQSSSSYVTIN 98
           +E T  E+M L++    +    E            +V+FI+DPY+  V+ QSSS Y+TIN
Sbjct: 33  DEYTPDEIMSLVESSSPTMTTTEIEGTNFSGEGSFRVRFIDDPYAMPVVVQSSSGYITIN 92

Query: 99  GNEESCGSSFSESDSSMMASVDMNGARIKVMEIDSETVEKWKMWSEDGLMKEEEEEEVSG 158
            NEESCG SFS+SDSS+MASVD +G      E  +   EK   WS + +   E E     
Sbjct: 93  VNEESCGPSFSDSDSSVMASVDASGLFGCCFEYGN---EKGGAWSTNEVRASEYE----- 152

Query: 159 VLDGIISWDEDDLARFVGDE 167
                  W++D LARF+G++
Sbjct: 153 -------WNDDMLARFLGED 157

BLAST of MELO3C004625 vs. NCBI nr
Match: gi|659071351|ref|XP_008459356.1| (PREDICTED: uncharacterized protein LOC103498512 [Cucumis melo])

HSP 1 Score: 337.0 bits (863), Expect = 1.9e-89
Identity = 170/170 (100.00%), Postives = 170/170 (100.00%), Query Frame = 1

Query: 1   MEESRNTHEFVRTEASTEKRQRPAAEDMDDDILAWISLEEETVGELMMLLDDEEKSRPVE 60
           MEESRNTHEFVRTEASTEKRQRPAAEDMDDDILAWISLEEETVGELMMLLDDEEKSRPVE
Sbjct: 1   MEESRNTHEFVRTEASTEKRQRPAAEDMDDDILAWISLEEETVGELMMLLDDEEKSRPVE 60

Query: 61  EKVKFIEDPYSSAVIFQSSSSYVTINGNEESCGSSFSESDSSMMASVDMNGARIKVMEID 120
           EKVKFIEDPYSSAVIFQSSSSYVTINGNEESCGSSFSESDSSMMASVDMNGARIKVMEID
Sbjct: 61  EKVKFIEDPYSSAVIFQSSSSYVTINGNEESCGSSFSESDSSMMASVDMNGARIKVMEID 120

Query: 121 SETVEKWKMWSEDGLMKEEEEEEVSGVLDGIISWDEDDLARFVGDEEQII 171
           SETVEKWKMWSEDGLMKEEEEEEVSGVLDGIISWDEDDLARFVGDEEQII
Sbjct: 121 SETVEKWKMWSEDGLMKEEEEEEVSGVLDGIISWDEDDLARFVGDEEQII 170

BLAST of MELO3C004625 vs. NCBI nr
Match: gi|778665639|ref|XP_011648606.1| (PREDICTED: uncharacterized protein LOC105434536 [Cucumis sativus])

HSP 1 Score: 287.3 bits (734), Expect = 1.7e-74
Identity = 147/167 (88.02%), Postives = 155/167 (92.81%), Query Frame = 1

Query: 1   MEESRNTHEFVRTEASTEKRQRPAAEDMDDDILAWISLEEETVGELMMLLDDEEKSRPVE 60
           MEESR TH+FVRTEASTEK      EDMDDDILAWISLE+ETVGELMMLLDDEEKSRPVE
Sbjct: 1   MEESRKTHDFVRTEASTEK-----TEDMDDDILAWISLEDETVGELMMLLDDEEKSRPVE 60

Query: 61  EKVKFIEDPYSSAVIFQSSSSYVTINGNEESCGSSFSESDSSMMASVDMNGARIKVMEID 120
           EKVKFIEDPYSSAV+FQSSSSYVTINGNEESCGSSFSESDSSMMASVDMNGARIKVMEID
Sbjct: 61  EKVKFIEDPYSSAVVFQSSSSYVTINGNEESCGSSFSESDSSMMASVDMNGARIKVMEID 120

Query: 121 SETVEKWKMWSEDGLMKEEEEEEVSGVLDGIISWDEDDLARFVGDEE 168
            ETV+KWKMWSE+ LMK  EEEEVSGV +GI+SWDEDDLARF+GDEE
Sbjct: 121 CETVDKWKMWSEERLMK--EEEEVSGVSEGIMSWDEDDLARFIGDEE 160

BLAST of MELO3C004625 vs. NCBI nr
Match: gi|823129195|ref|XP_012446777.1| (PREDICTED: uncharacterized protein LOC105770223 [Gossypium raimondii])

HSP 1 Score: 131.3 bits (329), Expect = 1.6e-27
Identity = 83/186 (44.62%), Postives = 113/186 (60.75%), Query Frame = 1

Query: 1   MEESRNTHEFVRTEASTEKRQRPAAEDMD----DDILAWISLE----EETVGELMMLLDD 60
           ME+ R T E    E+   KR+R A E ++    DD+L W+S+E     + + EL  L+DD
Sbjct: 1   MEKKRATEEDTGDESPATKRRREAPETVEFNGYDDVLPWLSMEGTCKTDAMSELFKLVDD 60

Query: 61  EEKSRPVEE--------KVKFIEDPYSSAVIFQSSSSYVTINGNEESCGSSFSESDSSMM 120
             +  P           KVKF ++PYSSA+IFQSSSSYVTINGNEESCGSSFS+S+SS+M
Sbjct: 61  STELAPSSTCSPTSYCTKVKFSDNPYSSALIFQSSSSYVTINGNEESCGSSFSDSESSVM 120

Query: 121 ASVDMNGARIKVMEIDS--ETVEKWKMWSEDGLM--KEEEEEEVSGVLDGIISWDEDDLA 167
           ASVDM G     ++ D+  E +  W + +E+G    K E E   +  +D    WDE+ LA
Sbjct: 121 ASVDMRGIVSTNVKFDNGLEEIRGW-LEAEEGSAWGKSEGESRETWTVDW--EWDEEQLA 180

BLAST of MELO3C004625 vs. NCBI nr
Match: gi|590575990|ref|XP_007012840.1| (Uncharacterized protein TCM_037661 [Theobroma cacao])

HSP 1 Score: 125.6 bits (314), Expect = 8.6e-26
Identity = 71/171 (41.52%), Postives = 106/171 (61.99%), Query Frame = 1

Query: 16  STEKRQRPAAEDMDDDILAWISLEE---ETVGELMMLLDDEEKSRPVEE----------- 75
           ++++ +    +++ DD+ AW+S+E+   ++V EL+ LLDD  +                 
Sbjct: 21  ASKRLRETVTDELADDVKAWLSVEDSETDSVSELLKLLDDSPEDTTSASSSTSSPTLFGM 80

Query: 76  KVKFIEDPYSSAVIFQSSSSYVTINGNEESCGSSFSESDSSMMASVDMNGARIKVMEIDS 135
           +V+F ++PYSSA+IFQSSSSY+TINGNEESCGSSFSES+SS+MASVDM G     +++ S
Sbjct: 81  RVRFSDNPYSSALIFQSSSSYITINGNEESCGSSFSESESSVMASVDMGGILNANVKVGS 140

Query: 136 --ETVEKWKMWSEDGLMKEEEEEEVSG-VLDGIISWDEDDLARFVGDEEQI 170
             E +  W      G   +  EEE  G ++D    WDE  L RF+G+EE++
Sbjct: 141 RLEGIRGWVEAEGGGGAWDRSEEEARGWMMDWEWEWDEKQLVRFLGEEEEL 191

BLAST of MELO3C004625 vs. NCBI nr
Match: gi|731406536|ref|XP_010656195.1| (PREDICTED: uncharacterized protein LOC104880632 [Vitis vinifera])

HSP 1 Score: 124.8 bits (312), Expect = 1.5e-25
Identity = 73/149 (48.99%), Postives = 103/149 (69.13%), Query Frame = 1

Query: 27  DMDDDILAWISLEEETVGELMMLLDDEEKSRPVEEKVKFIEDPYSSAVIFQSSSSYVTIN 86
           D DDDI+AW+S++E++V ELM LL+ E  S P+  KVKFI++PY S +IFQSS+SYVTIN
Sbjct: 34  DSDDDIMAWLSIDEDSVVELMELLEPEVTS-PI--KVKFIDNPYVSTLIFQSSASYVTIN 93

Query: 87  GNEESCGSSFSESDSSMMASVDMNGARIKVM-----EIDSETVEKWKM----WSEDGLMK 146
           GNEESCGSSFS+S++S+MAS+DM G R+  +     E  + +   W +    W+E+G   
Sbjct: 94  GNEESCGSSFSDSEASIMASIDMGGVRVHPVSGWAGEFPAASGGGWGLGESAWAENG--- 153

Query: 147 EEEEEEVSGVLDGIISWDEDDLARFVGDE 167
               +  +G  DG   WD+D LARF+G++
Sbjct: 154 ----DGFNG-WDG-FEWDDDLLARFLGED 170

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0LIN0_CUCSA1.2e-7488.02Uncharacterized protein OS=Cucumis sativus GN=Csa_2G000450 PE=4 SV=1[more]
A0A0D2LT56_GOSRA1.1e-2744.62Uncharacterized protein OS=Gossypium raimondii GN=B456_001G011900 PE=4 SV=1[more]
A0A061GTJ0_THECC6.0e-2641.52Uncharacterized protein OS=Theobroma cacao GN=TCM_037661 PE=4 SV=1[more]
A0A068U4E3_COFCA8.1e-2342.33Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00041663001 PE=4 SV=1[more]
V4UQI5_9ROSI1.8e-2243.67Uncharacterized protein OS=Citrus clementina GN=CICLE_v10010560mg PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT5G56880.11.6e-1738.57 unknown protein[more]
Match NameE-valueIdentityDescription
gi|659071351|ref|XP_008459356.1|1.9e-89100.00PREDICTED: uncharacterized protein LOC103498512 [Cucumis melo][more]
gi|778665639|ref|XP_011648606.1|1.7e-7488.02PREDICTED: uncharacterized protein LOC105434536 [Cucumis sativus][more]
gi|823129195|ref|XP_012446777.1|1.6e-2744.62PREDICTED: uncharacterized protein LOC105770223 [Gossypium raimondii][more]
gi|590575990|ref|XP_007012840.1|8.6e-2641.52Uncharacterized protein TCM_037661 [Theobroma cacao][more]
gi|731406536|ref|XP_010656195.1|1.5e-2548.99PREDICTED: uncharacterized protein LOC104880632 [Vitis vinifera][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C004625T1MELO3C004625T1mRNA


Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR37265FAMILY NOT NAMEDcoord: 24..112
score: 8.8
NoneNo IPR availablePANTHERPTHR37265:SF1SUBFAMILY NOT NAMEDcoord: 24..112
score: 8.8

The following gene(s) are paralogous to this gene:

None