MELO3C004444.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C004444.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionZinc finger, SWIM-type
Locationchr05 : 27533040 .. 27533369 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCGCCGACGGCCTCCTCCGCCCCGTCTATGAGGCCTGCATCGCCGGCTGCGACTCCGAAATCCACCGCCGTCCTTACCACCGCAACTGCACCTGCGCTCTCCACAAGTCTCGCCGTCAACCTCCTCATTGTTCCCATTCCAAATCCAAATCCATCTCCTATCCCATTCGTCGATCCTGGAGCGAAGGCTGCTTGTCTCTCGCCCTTGCCTCTGCTTCCTCTTCCCCTTCCACCTCCCCTGTCGTCGGTAAGACCTCTCAGCCTGGTGCTGCTTTGAGCGAGGACGATGACGACGACGCTCCTATTCTCTTTGCCAGGCCGAATTGA

mRNA sequence

ATGGCCGCCGACGGCCTCCTCCGCCCCGTCTATGAGGCCTGCATCGCCGGCTGCGACTCCGAAATCCACCGCCGTCCTTACCACCGCAACTGCACCTGCGCTCTCCACAAGTCTCGCCGTCAACCTCCTCATTGTTCCCATTCCAAATCCAAATCCATCTCCTATCCCATTCGTCGATCCTGGAGCGAAGGCTGCTTGTCTCTCGCCCTTGCCTCTGCTTCCTCTTCCCCTTCCACCTCCCCTGTCGTCGGTAAGACCTCTCAGCCTGGTGCTGCTTTGAGCGAGGACGATGACGACGACGCTCCTATTCTCTTTGCCAGGCCGAATTGA

Coding sequence (CDS)

ATGGCCGCCGACGGCCTCCTCCGCCCCGTCTATGAGGCCTGCATCGCCGGCTGCGACTCCGAAATCCACCGCCGTCCTTACCACCGCAACTGCACCTGCGCTCTCCACAAGTCTCGCCGTCAACCTCCTCATTGTTCCCATTCCAAATCCAAATCCATCTCCTATCCCATTCGTCGATCCTGGAGCGAAGGCTGCTTGTCTCTCGCCCTTGCCTCTGCTTCCTCTTCCCCTTCCACCTCCCCTGTCGTCGGTAAGACCTCTCAGCCTGGTGCTGCTTTGAGCGAGGACGATGACGACGACGCTCCTATTCTCTTTGCCAGGCCGAATTGA

Protein sequence

MAADGLLRPVYEACIAGCDSEIHRRPYHRNCTCALHKSRRQPPHCSHSKSKSISYPIRRSWSEGCLSLALASASSSPSTSPVVGKTSQPGAALSEDDDDDAPILFARPN
Homology
[Close]
BLAST of MELO3C004444.2 vs. NCBI nr
Match: XP_016901708.1 (PREDICTED: uncharacterized protein LOC103499614 [Cucumis melo])

HSP 1 Score: 207.6 bits (527), Expect = 2.1e-50
Identity = 109/109 (100.00%), Postives = 109/109 (100.00%), Query Frame = 0 

Query: 1   MAADGLLRPVYEACIAGCDSEIHRRPYHRNCTCALHKSRRQPPHCSHSKSKSISYPIRRS 60
           MAADGLLRPVYEACIAGCDSEIHRRPYHRNCTCALHKSRRQPPHCSHSKSKSISYPIRRS
Sbjct: 1   MAADGLLRPVYEACIAGCDSEIHRRPYHRNCTCALHKSRRQPPHCSHSKSKSISYPIRRS 60

Query: 61  WSEGCLSLALASAXXXXXTSPVVGKTSQPGAALSEDXXXDAPILFARPN 110
           WSEGCLSLALASAXXXXXTSPVVGKTSQPGAALSEDXXXDAPILFARPN
Sbjct: 61  WSEGCLSLALASAXXXXXTSPVVGKTSQPGAALSEDXXXDAPILFARPN 109

[Close]
BLAST of MELO3C004444.2 vs. NCBI nr
Match: XP_004139270.1 (PREDICTED: uncharacterized protein LOC101211332 [Cucumis sativus] >KGN60744.1 hypothetical protein Csa_2G009330 [Cucumis sativus])

HSP 1 Score: 189.9 bits (481), Expect = 4.6e-45
Identity = 96/109 (88.07%), Postives = 99/109 (90.83%), Query Frame = 0 

Query: 1   MAADGLLRPVYEACIAGCDSEIHRRPYHRNCTCALHKSRRQPPHCSHSKSKSISYPIRRS 60
           MAADGLLRP+YEACI GCDSEIHRRPYHRNC CALHKS RQPPHCSHSKSKSISYPIRRS
Sbjct: 1   MAADGLLRPIYEACI-GCDSEIHRRPYHRNCGCALHKSSRQPPHCSHSKSKSISYPIRRS 60

Query: 61  WSEGCLSLALASAXXXXXTSPVVGKTSQPGAALSEDXXXDAPILFARPN 110
           WSEGCLSL LASA     +SPVVGKTSQPGA LSEDXXXD+PILFARPN
Sbjct: 61  WSEGCLSLVLASASSSPSSSPVVGKTSQPGAPLSEDXXXDSPILFARPN 108

[Close]
BLAST of MELO3C004444.2 vs. NCBI nr
Match: XP_022965412.1 (uncharacterized protein LOC111465326 [Cucurbita maxima])

HSP 1 Score: 163.7 bits (413), Expect = 3.5e-37
Identity = 82/107 (76.64%), Postives = 90/107 (84.11%), Query Frame = 0 

Query: 1   MAADGLLRPVYEACIAGCDSEIHRRPYHRNCTCALHKSRRQPPHCSHSKSKSISYPIRRS 60
           MAADG+LRPVYEACIAGCDSEIHRRPYHRNC CALH+SRRQ  HC HSK KS+ YPIRRS
Sbjct: 1   MAADGVLRPVYEACIAGCDSEIHRRPYHRNCGCALHESRRQLSHCYHSKYKSVCYPIRRS 60

Query: 61  WSEGCLSLALASAXXXXXTSPVVGKTSQPGAALSEDXXXDAPILFAR 108
           WSEGCL+LALAS      +SPVVGK+SQPGAALS+D   DAP+ F R
Sbjct: 61  WSEGCLTLALAS----PSSSPVVGKSSQPGAALSDD-DDDAPVQFTR 102

[Close]
BLAST of MELO3C004444.2 vs. NCBI nr
Match: XP_022946869.1 (uncharacterized protein LOC111450804 [Cucurbita moschata])

HSP 1 Score: 159.1 bits (401), Expect = 8.7e-36
Identity = 84/107 (78.50%), Postives = 89/107 (83.18%), Query Frame = 0 

Query: 1   MAADGLLRPVYEACIAGCDSEIHRRPYHRNCTCALHKSRRQPPHCSHSKSKSISYPIRRS 60
           MAADGLLRPVYEACIAGCD+EI RRPYHRNC CALHKSRRQ P CSHSKSKSI YPIRRS
Sbjct: 1   MAADGLLRPVYEACIAGCDTEIDRRPYHRNCGCALHKSRRQSPRCSHSKSKSIFYPIRRS 60

Query: 61  WSEGCLSLALASAXXXXXTSPVVGKTSQPGAALSEDXXXDAPILFAR 108
           WSEGCL+L     XXXXX  PV+GKTSQPG ALS+D   DAP+  AR
Sbjct: 61  WSEGCLALXXXXXXXXXXXXPVIGKTSQPGVALSDD-DDDAPLQLAR 106

[Close]
BLAST of MELO3C004444.2 vs. NCBI nr
Match: XP_023546835.1 (uncharacterized protein LOC111805826 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 157.9 bits (398), Expect = 1.9e-35
Identity = 85/107 (79.44%), Postives = 90/107 (84.11%), Query Frame = 0 

Query: 1   MAADGLLRPVYEACIAGCDSEIHRRPYHRNCTCALHKSRRQPPHCSHSKSKSISYPIRRS 60
           MAADGLLRPVYEACIAGCD+EI RRPYHRNC CALHKSRRQ P CSHSKSKSI YPIRRS
Sbjct: 1   MAADGLLRPVYEACIAGCDTEIDRRPYHRNCGCALHKSRRQSPRCSHSKSKSIFYPIRRS 60

Query: 61  WSEGCLSLALASAXXXXXTSPVVGKTSQPGAALSEDXXXDAPILFAR 108
           WSEGCL+L     XXXXX  PV+GKTSQPG ALS+ XXX AP+  AR
Sbjct: 61  WSEGCLALXXXXXXXXXXXXPVIGKTSQPGVALSDXXXXXAPLQLAR 107

[Close]
BLAST of MELO3C004444.2 vs. TAIR10
Match: AT2G46490.1 (unknown protein)

HSP 1 Score: 87.8 bits (216), Expect = 4.5e-18
Identity = 42/74 (56.76%), Postives = 53/74 (71.62%), Query Frame = 0 

Query: 1  MAADGLLRPVYEACIAGCDSEIHRRPYHRNCTCALH---------KSRRQPPHC-SHSKS 60
          MAADG+ R ++E CI+G DS I RRPYH+NC CALH         +++R+PP C  H  S
Sbjct: 1  MAADGIFRSIFEGCISGLDSAIERRPYHKNCGCALHDKSSGAGKNQNQRRPPSCRRHGSS 60

Query: 61 KSISYPIRRSWSEG 65
          +SIS+PIRRSWSEG
Sbjct: 61 ESISFPIRRSWSEG 74

[Close]
BLAST of MELO3C004444.2 vs. TAIR10
Match: AT5G35110.1 (unknown protein)

HSP 1 Score: 79.3 bits (194), Expect = 1.6e-15
Identity = 38/73 (52.05%), Postives = 50/73 (68.49%), Query Frame = 0 

Query: 4  DGLLRPVYEACIAGCDSEIHRRPYHRNCTCALHKSRR---QPPHCSHSKSKSISYPIRRS 63
          DG+ R ++E CI+ CDS I RRPYH+NC CALH+  R       C H +S+ + +PI+RS
Sbjct: 7  DGIFRNIFEGCISSCDSSIQRRPYHKNCGCALHERSRGGGSATPCRHGRSEVVMFPIQRS 66

Query: 64 WSEG-CLSLALAS 73
          WSEG  L+L LAS
Sbjct: 67 WSEGNSLALHLAS 79

[Close]
BLAST of MELO3C004444.2 vs. TrEMBL
Match: tr|A0A1S4E0F4|A0A1S4E0F4_CUCME (uncharacterized protein LOC103499614 OS=Cucumis melo OX=3656 GN=LOC103499614 PE=4 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 1.4e-50
Identity = 109/109 (100.00%), Postives = 109/109 (100.00%), Query Frame = 0 

Query: 1   MAADGLLRPVYEACIAGCDSEIHRRPYHRNCTCALHKSRRQPPHCSHSKSKSISYPIRRS 60
           MAADGLLRPVYEACIAGCDSEIHRRPYHRNCTCALHKSRRQPPHCSHSKSKSISYPIRRS
Sbjct: 1   MAADGLLRPVYEACIAGCDSEIHRRPYHRNCTCALHKSRRQPPHCSHSKSKSISYPIRRS 60

Query: 61  WSEGCLSLALASAXXXXXTSPVVGKTSQPGAALSEDXXXDAPILFARPN 110
           WSEGCLSLALASAXXXXXTSPVVGKTSQPGAALSEDXXXDAPILFARPN
Sbjct: 61  WSEGCLSLALASAXXXXXTSPVVGKTSQPGAALSEDXXXDAPILFARPN 109

[Close]
BLAST of MELO3C004444.2 vs. TrEMBL
Match: tr|A0A0A0LI78|A0A0A0LI78_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G009330 PE=4 SV=1)

HSP 1 Score: 189.9 bits (481), Expect = 3.0e-45
Identity = 96/109 (88.07%), Postives = 99/109 (90.83%), Query Frame = 0 

Query: 1   MAADGLLRPVYEACIAGCDSEIHRRPYHRNCTCALHKSRRQPPHCSHSKSKSISYPIRRS 60
           MAADGLLRP+YEACI GCDSEIHRRPYHRNC CALHKS RQPPHCSHSKSKSISYPIRRS
Sbjct: 1   MAADGLLRPIYEACI-GCDSEIHRRPYHRNCGCALHKSSRQPPHCSHSKSKSISYPIRRS 60

Query: 61  WSEGCLSLALASAXXXXXTSPVVGKTSQPGAALSEDXXXDAPILFARPN 110
           WSEGCLSL LASA     +SPVVGKTSQPGA LSEDXXXD+PILFARPN
Sbjct: 61  WSEGCLSLVLASASSSPSSSPVVGKTSQPGAPLSEDXXXDSPILFARPN 108

[Close]
BLAST of MELO3C004444.2 vs. TrEMBL
Match: tr|W9SB18|W9SB18_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_003509 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 6.4e-19
Identity = 50/70 (71.43%), Postives = 57/70 (81.43%), Query Frame = 0 

Query: 2  AADGLLRPVYEACIAGCDSEIHRRPYHRNCTCALHKSRRQPPHCSH---SKSKSISYPIR 61
          AADG+ + VYE CIAGCD+ I RRPYHRNCTCALHKSR+   HCS     KSKS+SYPIR
Sbjct: 3  AADGVFKCVYEGCIAGCDTAIDRRPYHRNCTCALHKSRK--IHCSSHGLPKSKSVSYPIR 62

Query: 62 RSWSEGCLSL 69
          +SWSEGCL+L
Sbjct: 63 KSWSEGCLAL 70

[Close]
BLAST of MELO3C004444.2 vs. TrEMBL
Match: tr|A0A061GQ94|A0A061GQ94_THECC (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_038276 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 8.3e-19
Identity = 51/81 (62.96%), Postives = 60/81 (74.07%), Query Frame = 0 

Query: 2  AADGLLRPVYEACIAGCDSEIHRRPYHRNCTCALH-KSRRQPPHCSHSKSKSISYPIRRS 61
          AADGL R +YE CIAGCD  I RRPYHRNC+CALH KSR   PH +  K K++SYPIRR+
Sbjct: 5  AADGLFRSLYEGCIAGCDIGIERRPYHRNCSCALHDKSRGNCPH-AFPKCKNVSYPIRRA 64

Query: 62 WSEGCLSLALASAXXXXXTSP 82
          WSEGCL++A AS      +SP
Sbjct: 65 WSEGCLAMAAASCHSSPSSSP 84

[Close]
BLAST of MELO3C004444.2 vs. TrEMBL
Match: tr|A0A2C9UL65|A0A2C9UL65_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_14G139400 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 2.1e-17
Identity = 50/95 (52.63%), Postives = 64/95 (67.37%), Query Frame = 0 

Query: 2  AADGLLRPVYEACIAGCDSEIHRRPYHRNCTCALH-KSRRQPPHCSHSKSKSISYPIRRS 61
          AA+G  R +Y+ C++G D+ I RRPYHRNC CALH KS+   PH    KSK++SYPIRRS
Sbjct: 5  AAEGFFRYLYDGCLSGADTGIERRPYHRNCRCALHNKSKESCPH-GMPKSKNVSYPIRRS 64

Query: 62 WSEGCLSLALASAXXXXXTSPVVGKTSQPGAALSE 96
          WSEGCL+LAL SA     +SP    + Q G +  +
Sbjct: 65 WSEGCLALALGSAPASCQSSPSSSPSLQIGRSTQQ 98

The following BLAST results are available for this feature:
BLAST of MELO3C004444.2 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_016901708.12.1e-50100.00PREDICTED: uncharacterized protein LOC103499614 [Cucumis melo][more]
XP_004139270.14.6e-4588.07PREDICTED: uncharacterized protein LOC101211332 [Cucumis sativus] >KGN60744.1 hy... [more]
XP_022965412.13.5e-3776.64uncharacterized protein LOC111465326 [Cucurbita maxima][more]
XP_022946869.18.7e-3678.50uncharacterized protein LOC111450804 [Cucurbita moschata][more]
XP_023546835.11.9e-3579.44uncharacterized protein LOC111805826 [Cucurbita pepo subsp. pepo][more]
BLAST of MELO3C004444.2 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G46490.14.5e-1856.76unknown protein[more]
AT5G35110.11.6e-1552.05unknown protein[more]
BLAST of MELO3C004444.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of MELO3C004444.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S4E0F4|A0A1S4E0F4_CUCME1.4e-50100.00uncharacterized protein LOC103499614 OS=Cucumis melo OX=3656 GN=LOC103499614 PE=... [more]
tr|A0A0A0LI78|A0A0A0LI78_CUCSA3.0e-4588.07Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G009330 PE=4 SV=1[more]
tr|W9SB18|W9SB18_9ROSA6.4e-1971.43Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_003509 PE=4 SV=1[more]
tr|A0A061GQ94|A0A061GQ94_THECC8.3e-1962.96Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_038276 PE=4 SV=1[more]
tr|A0A2C9UL65|A0A2C9UL65_MANES2.1e-1752.63Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_14G139400 PE=4 SV=... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C004444.2.1MELO3C004444.2.1mRNA


InterPro
Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 73..109
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 73..87
NoneNo IPR availablePANTHERPTHR35121FAMILY NOT NAMEDcoord: 2..92
NoneNo IPR availablePANTHERPTHR35121:SF2GB|AAD20160.1coord: 2..92

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
MELO3C004444.2Csa2G009330Cucumber (Chinese Long) v2cumedB132
MELO3C004444.2Csa1G265650Cucumber (Chinese Long) v2cumedB066
MELO3C004444.2CSPI01G17290Wild cucumber (PI 183967)cpimedB065
MELO3C004444.2Cucsa.350700Cucumber (Gy14) v1cgymedB567
MELO3C004444.2Cucsa.132680Cucumber (Gy14) v1cgymedB213
MELO3C004444.2CmaCh05G012460Cucurbita maxima (Rimu)cmamedB829
MELO3C004444.2CmaCh11G004880Cucurbita maxima (Rimu)cmamedB146
MELO3C004444.2CmoCh12G011880Cucurbita moschata (Rifu)cmomedB177
MELO3C004444.2CmoCh11G004890Cucurbita moschata (Rifu)cmomedB135
MELO3C004444.2CmoCh05G012740Cucurbita moschata (Rifu)cmomedB821
MELO3C004444.2Lsi11G003830Bottle gourd (USVL1VR-Ls)lsimedB123
MELO3C004444.2Lsi06G010520Bottle gourd (USVL1VR-Ls)lsimedB442
MELO3C004444.2Cp4.1LG04g08920Cucurbita pepo (Zucchini)cpemedB755
MELO3C004444.2Cp4.1LG11g10340Cucurbita pepo (Zucchini)cpemedB123
MELO3C004444.2Cp4.1LG07g11010Cucurbita pepo (Zucchini)cpemedB914
MELO3C004444.2CsGy1G017480Cucumber (Gy14) v2cgybmedB061
MELO3C004444.2Cla013599Watermelon (97103) v1medwmB407
MELO3C004444.2Cla018698Watermelon (97103) v1medwmB422
MELO3C004444.2ClCG02G017270Watermelon (Charleston Gray)medwcgB369
MELO3C004444.2ClCG06G012060Watermelon (Charleston Gray)medwcgB383
MELO3C004444.2Cla97C06G121240Watermelon (97103) v2medwmbB383
MELO3C004444.2Cla97C02G042960Watermelon (97103) v2medwmbB367
MELO3C004444.2Carg17457Silver-seed gourdcarmedB0268
MELO3C004444.2Carg23022Silver-seed gourdcarmedB1056
MELO3C004444.2CsaV3_1G028530Cucumber (Chinese Long) v3cucmedB069
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
MELO3C004444.2MELO3C010261.2Melon (DHL92) v3.6.1medmedB111
The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C004444.2Wax gourdmedwgoB457
MELO3C004444.2Cucumber (Gy14) v2cgybmedB118
MELO3C004444.2Cucurbita maxima (Rimu)cmamedB187
MELO3C004444.2Cucurbita pepo (Zucchini)cpemedB401
MELO3C004444.2Wild cucumber (PI 183967)cpimedB132
MELO3C004444.2Cucumber (Chinese Long) v3cucmedB134