ClCG02G017270 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG02G017270
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Gb\|AAD20160.1
Location	CG_Chr02 : 31805841 .. 31806368 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCGCCGACGGCCTCCTCCGCCCTGTTTACGAGGCCTGCATCGCCGGCTGCGACTCCGAAATCCACCGCCGCCCCTACCACCGCAACTGCGGTTGCGCTCTCCACAAATCCCGCCGTCAACCTCCTCACTGCTCCCATTCCAAGTCCAAATCCGTCTCCTATCCCATCCGTCGATCCTGGAGCGAAGGCTGCTTGGCGCTCGTCCTTGCCTCTGCTTCCTCTTCTCCTTCCTCCTCCCCTGTCGTCGGTAAGACCTCTCAACCTGGTGCGGCTTTGAGCGACGACGATGATGACGACACTCCTATTCTGTTTGCCAGGAATTGAATTCGATCCTTCCTTCTTCTTCTTTTTCTTTAATGTTTTCGACAATTTTCCAGCCCTAGGTGTTGAATAATTGTGAACCAGATGAGATGATTTATTACTGTGATTTTTATTTTTATTTTTTTGAGTTTCTGTGATCTGAAAAACAATATTGGATCCGTTCTTGTTTCTGAGTCATGTTACTTTCATCTTGCCATCAAATAG

mRNA sequence

ATGGCCGCCGACGGCCTCCTCCGCCCTGTTTACGAGGCCTGCATCGCCGGCTGCGACTCCGAAATCCACCGCCGCCCCTACCACCGCAACTGCGGTTGCGCTCTCCACAAATCCCGCCGTCAACCTCCTCACTGCTCCCATTCCAAGTCCAAATCCGTCTCCTATCCCATCCGTCGATCCTGGAGCGAAGGCTGCTTGGCGCTCGTCCTTGCCTCTGCTTCCTCTTCTCCTTCCTCCTCCCCTGTCGTCGGTAAGACCTCTCAACCTGGTGCGGCTTTGAGCGACGACGATGATGACGACACTCCTATTCTTTTCTGTGATCTGAAAAACAATATTGGATCCGTTCTTGTTTCTGAGTCATGTTACTTTCATCTTGCCATCAAATAG

Coding sequence (CDS)

ATGGCCGCCGACGGCCTCCTCCGCCCTGTTTACGAGGCCTGCATCGCCGGCTGCGACTCCGAAATCCACCGCCGCCCCTACCACCGCAACTGCGGTTGCGCTCTCCACAAATCCCGCCGTCAACCTCCTCACTGCTCCCATTCCAAGTCCAAATCCGTCTCCTATCCCATCCGTCGATCCTGGAGCGAAGGCTGCTTGGCGCTCGTCCTTGCCTCTGCTTCCTCTTCTCCTTCCTCCTCCCCTGTCGTCGGTAAGACCTCTCAACCTGGTGCGGCTTTGAGCGACGACGATGATGACGACACTCCTATTCTTTTCTGTGATCTGAAAAACAATATTGGATCCGTTCTTGTTTCTGAGTCATGTTACTTTCATCTTGCCATCAAATAG

Protein sequence

MAADGLLRPVYEACIAGCDSEIHRRPYHRNCGCALHKSRRQPPHCSHSKSKSVSYPIRRSWSEGCLALVLASASSSPSSSPVVGKTSQPGAALSDDDDDDTPILFCDLKNNIGSVLVSESCYFHLAIK

Homology

[Close]

BLAST of ClCG02G017270 vs. TrEMBL
Match: A0A0A0LI78_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G009330 PE=4 SV=1)

HSP 1 Score: 206.8 bits (525), Expect = 1.5e-50
Identity = 97/105 (92.38%), Postives = 102/105 (97.14%), Query Frame = 1


Query: 1   MAADGLLRPVYEACIAGCDSEIHRRPYHRNCGCALHKSRRQPPHCSHSKSKSVSYPIRRS 60
           MAADGLLRP+YEACI GCDSEIHRRPYHRNCGCALHKS RQPPHCSHSKSKS+SYPIRRS
Sbjct: 1   MAADGLLRPIYEACI-GCDSEIHRRPYHRNCGCALHKSSRQPPHCSHSKSKSISYPIRRS 60

Query: 61  WSEGCLALVLASASSSPSSSPVVGKTSQPGAALSDDDDDDTPILF 106
           WSEGCL+LVLASASSSPSSSPVVGKTSQPGA LS+DDDDD+PILF
Sbjct: 61  WSEGCLSLVLASASSSPSSSPVVGKTSQPGAPLSEDDDDDSPILF 104

[Close]

BLAST of ClCG02G017270 vs. TrEMBL
Match: W9SB18_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_003509 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 1.1e-24
Identity = 66/108 (61.11%), Postives = 77/108 (71.30%), Query Frame = 1


Query: 2   AADGLLRPVYEACIAGCDSEIHRRPYHRNCGCALHKSRRQPPHCSH---SKSKSVSYPIR 61
           AADG+ + VYE CIAGCD+ I RRPYHRNC CALHKSR+   HCS     KSKSVSYPIR
Sbjct: 3   AADGVFKCVYEGCIAGCDTAIDRRPYHRNCTCALHKSRK--IHCSSHGLPKSKSVSYPIR 62

Query: 62  RSWSEGCLALVLA-----SASSSPSSSPVV---GKTSQPGAALSDDDD 99
           +SWSEGCLAL  A     SA+SSPSSSP V   GK  + G+   +++D
Sbjct: 63  KSWSEGCLALAAAAGAAGSAASSPSSSPAVVAGGKIRRLGSCEEEEED 108

[Close]

BLAST of ClCG02G017270 vs. TrEMBL
Match: A0A061GQ94_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_038276 PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 1.2e-23
Identity = 60/106 (56.60%), Postives = 71/106 (66.98%), Query Frame = 1


Query: 2   AADGLLRPVYEACIAGCDSEIHRRPYHRNCGCALH-KSRRQPPHCSHSKSKSVSYPIRRS 61
           AADGL R +YE CIAGCD  I RRPYHRNC CALH KSR   PH +  K K+VSYPIRR+
Sbjct: 5   AADGLFRSLYEGCIAGCDIGIERRPYHRNCSCALHDKSRGNCPH-AFPKCKNVSYPIRRA 64

Query: 62  WSEGCLALVLASASSSPSSSPVVGKTSQPG----AALSDDDDDDTP 103
           WSEGCLA+  AS  SSPSSSP        G     +  +++++D P
Sbjct: 65  WSEGCLAMAAASCHSSPSSSPAFSGVHGAGKHRLVSYKEEEEEDKP 109

[Close]

BLAST of ClCG02G017270 vs. TrEMBL
Match: A0A0B2P2S5_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_050045 PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 7.4e-21
Identity = 53/88 (60.23%), Postives = 65/88 (73.86%), Query Frame = 1


Query: 2  AADGLLRPVYEACIAGCDSEIHRRPYHRNCGCALH-KSRRQPPHCSHS--KSKSVSYPIR 61
          AADGL RP+YE CI+  D+++ RRPYH+NCGCALH KSRR    C+H   K  +VSYP+R
Sbjct: 4  AADGLFRPIYEGCISAYDNDVERRPYHKNCGCALHSKSRRNSRACTHKLPKCNNVSYPMR 63

Query: 62 RSWSEGCLALVLA--SASSSPSSSPVVG 85
          R+WSEG L++  A  SA SSPSSSP  G
Sbjct: 64 RAWSEGSLSMASATTSAHSSPSSSPAAG 91

[Close]

BLAST of ClCG02G017270 vs. TrEMBL
Match: I1MI05_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_15G202600 PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 7.4e-21
Identity = 53/88 (60.23%), Postives = 65/88 (73.86%), Query Frame = 1


Query: 2  AADGLLRPVYEACIAGCDSEIHRRPYHRNCGCALH-KSRRQPPHCSHS--KSKSVSYPIR 61
          AADGL RP+YE CI+  D+++ RRPYH+NCGCALH KSRR    C+H   K  +VSYP+R
Sbjct: 4  AADGLFRPIYEGCISAYDNDVERRPYHKNCGCALHSKSRRNSRACTHKLPKCNNVSYPMR 63

Query: 62 RSWSEGCLALVLA--SASSSPSSSPVVG 85
          R+WSEG L++  A  SA SSPSSSP  G
Sbjct: 64 RAWSEGSLSMASATTSAHSSPSSSPAAG 91

[Close]

BLAST of ClCG02G017270 vs. TAIR10
Match: AT2G46490.1 (AT2G46490.1 unknown protein)

HSP 1 Score: 100.5 bits (249), Expect = 7.8e-22
Identity = 52/106 (49.06%), Postives = 68/106 (64.15%), Query Frame = 1


Query: 1   MAADGLLRPVYEACIAGCDSEIHRRPYHRNCGCALH---------KSRRQPPHC-SHSKS 60
           MAADG+ R ++E CI+G DS I RRPYH+NCGCALH         +++R+PP C  H  S
Sbjct: 1   MAADGIFRSIFEGCISGLDSAIERRPYHKNCGCALHDKSSGAGKNQNQRRPPSCRRHGSS 60

Query: 61  KSVSYPIRRSWSEG-CLALVLASASSSPSSSPVVGKTSQPGAALSD 96
           +S+S+PIRRSWSEG  +A+ L S+SSS S+   +  +S      SD
Sbjct: 61  ESISFPIRRSWSEGNIMAMNLFSSSSSSSNLQSLSSSSSLSNLASD 106

[Close]

BLAST of ClCG02G017270 vs. TAIR10
Match: AT5G35110.1 (AT5G35110.1 unknown protein)

HSP 1 Score: 94.0 bits (232), Expect = 7.3e-20
Identity = 50/103 (48.54%), Postives = 63/103 (61.17%), Query Frame = 1


Query: 4   DGLLRPVYEACIAGCDSEIHRRPYHRNCGCALHKSRR---QPPHCSHSKSKSVSYPIRRS 63
           DG+ R ++E CI+ CDS I RRPYH+NCGCALH+  R       C H +S+ V +PI+RS
Sbjct: 7   DGIFRNIFEGCISSCDSSIQRRPYHKNCGCALHERSRGGGSATPCRHGRSEVVMFPIQRS 66

Query: 64  WSEG-CLALVLASASSSP-----SSSPVVGKTSQPGAALSDDD 98
           WSEG  LAL LAS+SSS      SSS  +   +   + +SD D
Sbjct: 67  WSEGNSLALHLASSSSSSNLQSLSSSSSISTLASLSSTVSDID 109

[Close]

BLAST of ClCG02G017270 vs. NCBI nr
Match: gi|659071608|ref|XP_008460871.1| (PREDICTED: uncharacterized protein LOC103499614 [Cucumis melo])

HSP 1 Score: 211.5 bits (537), Expect = 8.9e-52
Identity = 98/105 (93.33%), Postives = 102/105 (97.14%), Query Frame = 1


Query: 1   MAADGLLRPVYEACIAGCDSEIHRRPYHRNCGCALHKSRRQPPHCSHSKSKSVSYPIRRS 60
           MAADGLLRPVYEACIAGCDSEIHRRPYHRNC CALHKSRRQPPHCSHSKSKS+SYPIRRS
Sbjct: 1   MAADGLLRPVYEACIAGCDSEIHRRPYHRNCTCALHKSRRQPPHCSHSKSKSISYPIRRS 60

Query: 61  WSEGCLALVLASASSSPSSSPVVGKTSQPGAALSDDDDDDTPILF 106
           WSEGCL+L LASASSSPS+SPVVGKTSQPGAALS+DDDDD PILF
Sbjct: 61  WSEGCLSLALASASSSPSTSPVVGKTSQPGAALSEDDDDDAPILF 105

[Close]

BLAST of ClCG02G017270 vs. NCBI nr
Match: gi|449443003|ref|XP_004139270.1| (PREDICTED: uncharacterized protein LOC101211332 [Cucumis sativus])

HSP 1 Score: 206.8 bits (525), Expect = 2.2e-50
Identity = 97/105 (92.38%), Postives = 102/105 (97.14%), Query Frame = 1


Query: 1   MAADGLLRPVYEACIAGCDSEIHRRPYHRNCGCALHKSRRQPPHCSHSKSKSVSYPIRRS 60
           MAADGLLRP+YEACI GCDSEIHRRPYHRNCGCALHKS RQPPHCSHSKSKS+SYPIRRS
Sbjct: 1   MAADGLLRPIYEACI-GCDSEIHRRPYHRNCGCALHKSSRQPPHCSHSKSKSISYPIRRS 60

Query: 61  WSEGCLALVLASASSSPSSSPVVGKTSQPGAALSDDDDDDTPILF 106
           WSEGCL+LVLASASSSPSSSPVVGKTSQPGA LS+DDDDD+PILF
Sbjct: 61  WSEGCLSLVLASASSSPSSSPVVGKTSQPGAPLSEDDDDDSPILF 104

[Close]

BLAST of ClCG02G017270 vs. NCBI nr
Match: gi|703149693|ref|XP_010109667.1| (hypothetical protein L484_003509 [Morus notabilis])

HSP 1 Score: 120.9 bits (302), Expect = 1.6e-24
Identity = 66/108 (61.11%), Postives = 77/108 (71.30%), Query Frame = 1


Query: 2   AADGLLRPVYEACIAGCDSEIHRRPYHRNCGCALHKSRRQPPHCSH---SKSKSVSYPIR 61
           AADG+ + VYE CIAGCD+ I RRPYHRNC CALHKSR+   HCS     KSKSVSYPIR
Sbjct: 3   AADGVFKCVYEGCIAGCDTAIDRRPYHRNCTCALHKSRK--IHCSSHGLPKSKSVSYPIR 62

Query: 62  RSWSEGCLALVLA-----SASSSPSSSPVV---GKTSQPGAALSDDDD 99
           +SWSEGCLAL  A     SA+SSPSSSP V   GK  + G+   +++D
Sbjct: 63  KSWSEGCLALAAAAGAAGSAASSPSSSPAVVAGGKIRRLGSCEEEEED 108

[Close]

BLAST of ClCG02G017270 vs. NCBI nr
Match: gi|702290529|ref|XP_010047178.1| (PREDICTED: uncharacterized protein LOC104436145 [Eucalyptus grandis])

HSP 1 Score: 117.9 bits (294), Expect = 1.3e-23
Identity = 65/100 (65.00%), Postives = 70/100 (70.00%), Query Frame = 1


Query: 2   AADGLLRPVYEACIAGCDSEIHRRPYHRNCGCALH-KSRRQPPHCSHSKSKSVSYPIRRS 61
           AA+ LLR VYE CI+GCDS I RRPYHRNCGCALH KS    P     K KSVSYPIRR+
Sbjct: 5   AAECLLRCVYEGCISGCDSGIERRPYHRNCGCALHKKSGSNCPRPPTGKGKSVSYPIRRA 64

Query: 62  WSEGCLALVLASASSSPSSSPVVGKTSQPGAALSDDDDDD 101
           WSEG L L +ASASSSPSSSPVVG+    G    D   DD
Sbjct: 65  WSEGSLVL-MASASSSPSSSPVVGRPLAAGPCDLDRAMDD 103

[Close]

BLAST of ClCG02G017270 vs. NCBI nr
Match: gi|590579133|ref|XP_007013703.1| (Uncharacterized protein TCM_038276 [Theobroma cacao])

HSP 1 Score: 117.5 bits (293), Expect = 1.7e-23
Identity = 60/106 (56.60%), Postives = 71/106 (66.98%), Query Frame = 1


Query: 2   AADGLLRPVYEACIAGCDSEIHRRPYHRNCGCALH-KSRRQPPHCSHSKSKSVSYPIRRS 61
           AADGL R +YE CIAGCD  I RRPYHRNC CALH KSR   PH +  K K+VSYPIRR+
Sbjct: 5   AADGLFRSLYEGCIAGCDIGIERRPYHRNCSCALHDKSRGNCPH-AFPKCKNVSYPIRRA 64

Query: 62  WSEGCLALVLASASSSPSSSPVVGKTSQPG----AALSDDDDDDTP 103
           WSEGCLA+  AS  SSPSSSP        G     +  +++++D P
Sbjct: 65  WSEGCLAMAAASCHSSPSSSPAFSGVHGAGKHRLVSYKEEEEEDKP 109

The following BLAST results are available for this feature:

BLAST of ClCG02G017270 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LI78_CUCSA	1.5e-50	92.38	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G009330 PE=4 SV=1	[more]
W9SB18_9ROSA	1.1e-24	61.11	Uncharacterized protein OS=Morus notabilis GN=L484_003509 PE=4 SV=1	[more]
A0A061GQ94_THECC	1.2e-23	56.60	Uncharacterized protein OS=Theobroma cacao GN=TCM_038276 PE=4 SV=1	[more]
A0A0B2P2S5_GLYSO	7.4e-21	60.23	Uncharacterized protein OS=Glycine soja GN=glysoja_050045 PE=4 SV=1	[more]
I1MI05_SOYBN	7.4e-21	60.23	Uncharacterized protein OS=Glycine max GN=GLYMA_15G202600 PE=4 SV=1	[more]

BLAST of ClCG02G017270 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G46490.1	7.8e-22	49.06	unknown protein	[more]
AT5G35110.1	7.3e-20	48.54	unknown protein	[more]

BLAST of ClCG02G017270 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659071608\|ref\|XP_008460871.1\|	8.9e-52	93.33	PREDICTED: uncharacterized protein LOC103499614 [Cucumis melo]	[more]
gi\|449443003\|ref\|XP_004139270.1\|	2.2e-50	92.38	PREDICTED: uncharacterized protein LOC101211332 [Cucumis sativus]	[more]
gi\|703149693\|ref\|XP_010109667.1\|	1.6e-24	61.11	hypothetical protein L484_003509 [Morus notabilis]	[more]
gi\|702290529\|ref\|XP_010047178.1\|	1.3e-23	65.00	PREDICTED: uncharacterized protein LOC104436145 [Eucalyptus grandis]	[more]
gi\|590579133\|ref\|XP_007013703.1\|	1.7e-23	56.60	Uncharacterized protein TCM_038276 [Theobroma cacao]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0008270	zinc ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG02G017270.1	ClCG02G017270.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35121	FAMILY NOT NAMED	coord: 2..118 score: 1.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG02G017270	Csa2G009330	Cucumber (Chinese Long) v2	cuwcgB122
ClCG02G017270	MELO3C004444	Melon (DHL92) v3.5.1	mewcgB375
ClCG02G017270	Cla013599	Watermelon (97103) v1	wcgwmB197
ClCG02G017270	Cla97C02G042960	Watermelon (97103) v2	wcgwmbB138
ClCG02G017270	Cucsa.132680	Cucumber (Gy14) v1	cgywcgB218
ClCG02G017270	CmaCh05G012460	Cucurbita maxima (Rimu)	cmawcgB695
ClCG02G017270	CmoCh12G011880	Cucurbita moschata (Rifu)	cmowcgB144
ClCG02G017270	CmoCh05G012740	Cucurbita moschata (Rifu)	cmowcgB700
ClCG02G017270	Lsi11G003830	Bottle gourd (USVL1VR-Ls)	lsiwcgB098
ClCG02G017270	Cp4.1LG07g11010	Cucurbita pepo (Zucchini)	cpewcgB736
ClCG02G017270	Cp4.1LG11g10340	Cucurbita pepo (Zucchini)	cpewcgB104
ClCG02G017270	MELO3C004444.2	Melon (DHL92) v3.6.1	medwcgB369
ClCG02G017270	Carg17457	Silver-seed gourd	carwcgB0245
ClCG02G017270	Carg23022	Silver-seed gourd	carwcgB1042

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None