CmoCh05G012740 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh05G012740
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein isoform 1
Location	Cmo_Chr05 : 9886584 .. 9886907 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCGCCGACGGCCTCCTCCGCCCTGTCTACGAGGCTTGCATCGCCGGCTGCGACACCGAGATCGACCGCCGCCCCTACCACCGCAACTGCGGCTGTGCACTCCACAAATCCCGTCGTCAATCTCCTCGCTGCTCCCATTCCAAGTCTAAATCCATCTTCTATCCCATTCGCCGATCCTGGAGTGAAGGTTGCTTGGCACTCGCCCTCGCCTCTGCTTCATCTTCCCCTTCCTCCTCCCCTGTCATCGGTAAGACCTCTCAACCTGGTGTCGCTTTGAGCGACGATGACGACGACGCTCCTCTTCAGCTTGCGAGGAATTGA

mRNA sequence

ATGGCCGCCGACGGCCTCCTCCGCCCTGTCTACGAGGCTTGCATCGCCGGCTGCGACACCGAGATCGACCGCCGCCCCTACCACCGCAACTGCGGCTGTGCACTCCACAAATCCCGTCGTCAATCTCCTCGCTGCTCCCATTCCAAGTCTAAATCCATCTTCTATCCCATTCGCCGATCCTGGAGTGAAGGTTGCTTGGCACTCGCCCTCGCCTCTGCTTCATCTTCCCCTTCCTCCTCCCCTGTCATCGGTAAGACCTCTCAACCTGGTGTCGCTTTGAGCGACGATGACGACGACGCTCCTCTTCAGCTTGCGAGGAATTGA

Coding sequence (CDS)

ATGGCCGCCGACGGCCTCCTCCGCCCTGTCTACGAGGCTTGCATCGCCGGCTGCGACACCGAGATCGACCGCCGCCCCTACCACCGCAACTGCGGCTGTGCACTCCACAAATCCCGTCGTCAATCTCCTCGCTGCTCCCATTCCAAGTCTAAATCCATCTTCTATCCCATTCGCCGATCCTGGAGTGAAGGTTGCTTGGCACTCGCCCTCGCCTCTGCTTCATCTTCCCCTTCCTCCTCCCCTGTCATCGGTAAGACCTCTCAACCTGGTGTCGCTTTGAGCGACGATGACGACGACGCTCCTCTTCAGCTTGCGAGGAATTGA

Homology

[Close]

BLAST of CmoCh05G012740 vs. TrEMBL
Match: A0A0A0LI78_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G009330 PE=4 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 1.1e-41
Identity = 89/107 (83.18%), Postives = 95/107 (88.79%), Query Frame = 1


Query: 1   MAADGLLRPVYEACIAGCDTEIDRRPYHRNCGCALHKSRRQSPRCSHSKSKSIFYPIRRS 60
           MAADGLLRP+YEACI GCD+EI RRPYHRNCGCALHKS RQ P CSHSKSKSI YPIRRS
Sbjct: 1   MAADGLLRPIYEACI-GCDSEIHRRPYHRNCGCALHKSSRQPPHCSHSKSKSISYPIRRS 60

Query: 61  WSEGCLALALASASSSPSSSPVIGKTSQPGVALS-DDDDDAPLQLAR 107
           WSEGCL+L LASASSSPSSSPV+GKTSQPG  LS DDDDD+P+  AR
Sbjct: 61  WSEGCLSLVLASASSSPSSSPVVGKTSQPGAPLSEDDDDDSPILFAR 106

[Close]

BLAST of CmoCh05G012740 vs. TrEMBL
Match: W9SB18_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_003509 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 1.9e-22
Identity = 65/108 (60.19%), Postives = 76/108 (70.37%), Query Frame = 1


Query: 2   AADGLLRPVYEACIAGCDTEIDRRPYHRNCGCALHKSRRQSPRCSH---SKSKSIFYPIR 61
           AADG+ + VYE CIAGCDT IDRRPYHRNC CALHKSR+    CS     KSKS+ YPIR
Sbjct: 3   AADGVFKCVYEGCIAGCDTAIDRRPYHRNCTCALHKSRK--IHCSSHGLPKSKSVSYPIR 62

Query: 62  RSWSEGCLALALA-----SASSSPSSSPVI---GKTSQPGVALSDDDD 99
           +SWSEGCLALA A     SA+SSPSSSP +   GK  + G    +++D
Sbjct: 63  KSWSEGCLALAAAAGAAGSAASSPSSSPAVVAGGKIRRLGSCEEEEED 108

[Close]

BLAST of CmoCh05G012740 vs. TrEMBL
Match: A0A061GQ94_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_038276 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 8.1e-21
Identity = 52/80 (65.00%), Postives = 60/80 (75.00%), Query Frame = 1


Query: 2  AADGLLRPVYEACIAGCDTEIDRRPYHRNCGCALHKSRRQSPRCSHSKSKSIFYPIRRSW 61
          AADGL R +YE CIAGCD  I+RRPYHRNC CALH   R +   +  K K++ YPIRR+W
Sbjct: 5  AADGLFRSLYEGCIAGCDIGIERRPYHRNCSCALHDKSRGNCPHAFPKCKNVSYPIRRAW 64

Query: 62 SEGCLALALASASSSPSSSP 82
          SEGCLA+A AS  SSPSSSP
Sbjct: 65 SEGCLAMAAASCHSSPSSSP 84

[Close]

BLAST of CmoCh05G012740 vs. TrEMBL
Match: I1MI05_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_15G202600 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 6.8e-20
Identity = 53/88 (60.23%), Postives = 66/88 (75.00%), Query Frame = 1


Query: 2  AADGLLRPVYEACIAGCDTEIDRRPYHRNCGCALH-KSRRQSPRCSHS--KSKSIFYPIR 61
          AADGL RP+YE CI+  D +++RRPYH+NCGCALH KSRR S  C+H   K  ++ YP+R
Sbjct: 4  AADGLFRPIYEGCISAYDNDVERRPYHKNCGCALHSKSRRNSRACTHKLPKCNNVSYPMR 63

Query: 62 RSWSEGCLALALA--SASSSPSSSPVIG 85
          R+WSEG L++A A  SA SSPSSSP  G
Sbjct: 64 RAWSEGSLSMASATTSAHSSPSSSPAAG 91

[Close]

BLAST of CmoCh05G012740 vs. TrEMBL
Match: A0A0B2P2S5_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_050045 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 6.8e-20
Identity = 53/88 (60.23%), Postives = 66/88 (75.00%), Query Frame = 1


Query: 2  AADGLLRPVYEACIAGCDTEIDRRPYHRNCGCALH-KSRRQSPRCSHS--KSKSIFYPIR 61
          AADGL RP+YE CI+  D +++RRPYH+NCGCALH KSRR S  C+H   K  ++ YP+R
Sbjct: 4  AADGLFRPIYEGCISAYDNDVERRPYHKNCGCALHSKSRRNSRACTHKLPKCNNVSYPMR 63

Query: 62 RSWSEGCLALALA--SASSSPSSSPVIG 85
          R+WSEG L++A A  SA SSPSSSP  G
Sbjct: 64 RAWSEGSLSMASATTSAHSSPSSSPAAG 91

[Close]

BLAST of CmoCh05G012740 vs. TAIR10
Match: AT2G46490.1 (AT2G46490.1 unknown protein)

HSP 1 Score: 89.7 bits (221), Expect = 1.2e-18
Identity = 53/116 (45.69%), Postives = 75/116 (64.66%), Query Frame = 1


Query: 1   MAADGLLRPVYEACIAGCDTEIDRRPYHRNCGCALH---------KSRRQSPRC-SHSKS 60
           MAADG+ R ++E CI+G D+ I+RRPYH+NCGCALH         +++R+ P C  H  S
Sbjct: 1   MAADGIFRSIFEGCISGLDSAIERRPYHKNCGCALHDKSSGAGKNQNQRRPPSCRRHGSS 60

Query: 61  KSIFYPIRRSWSEG-CLALALASASSSPSSSPVIGKTSQPGVALSDDDDDAPLQLA 106
           +SI +PIRRSWSEG  +A+ L S+SSS S+   +  +S    +LS+   D P+  A
Sbjct: 61  ESISFPIRRSWSEGNIMAMNLFSSSSSSSNLQSLSSSS----SLSNLASDLPVDNA 112

[Close]

BLAST of CmoCh05G012740 vs. TAIR10
Match: AT5G35110.1 (AT5G35110.1 unknown protein)

HSP 1 Score: 87.4 bits (215), Expect = 5.7e-18
Identity = 49/103 (47.57%), Postives = 65/103 (63.11%), Query Frame = 1


Query: 4   DGLLRPVYEACIAGCDTEIDRRPYHRNCGCALHKSRR---QSPRCSHSKSKSIFYPIRRS 63
           DG+ R ++E CI+ CD+ I RRPYH+NCGCALH+  R    +  C H +S+ + +PI+RS
Sbjct: 7   DGIFRNIFEGCISSCDSSIQRRPYHKNCGCALHERSRGGGSATPCRHGRSEVVMFPIQRS 66

Query: 64  WSEG-CLALALASASSSP-----SSSPVIGKTSQPGVALSDDD 98
           WSEG  LAL LAS+SSS      SSS  I   +     +SD D
Sbjct: 67  WSEGNSLALHLASSSSSSNLQSLSSSSSISTLASLSSTVSDID 109

[Close]

BLAST of CmoCh05G012740 vs. NCBI nr
Match: gi|659071608|ref|XP_008460871.1| (PREDICTED: uncharacterized protein LOC103499614 [Cucumis melo])

HSP 1 Score: 186.4 bits (472), Expect = 2.6e-44
Identity = 93/107 (86.92%), Postives = 98/107 (91.59%), Query Frame = 1


Query: 1   MAADGLLRPVYEACIAGCDTEIDRRPYHRNCGCALHKSRRQSPRCSHSKSKSIFYPIRRS 60
           MAADGLLRPVYEACIAGCD+EI RRPYHRNC CALHKSRRQ P CSHSKSKSI YPIRRS
Sbjct: 1   MAADGLLRPVYEACIAGCDSEIHRRPYHRNCTCALHKSRRQPPHCSHSKSKSISYPIRRS 60

Query: 61  WSEGCLALALASASSSPSSSPVIGKTSQPGVALS-DDDDDAPLQLAR 107
           WSEGCL+LALASASSSPS+SPV+GKTSQPG ALS DDDDDAP+  AR
Sbjct: 61  WSEGCLSLALASASSSPSTSPVVGKTSQPGAALSEDDDDDAPILFAR 107

[Close]

BLAST of CmoCh05G012740 vs. NCBI nr
Match: gi|449443003|ref|XP_004139270.1| (PREDICTED: uncharacterized protein LOC101211332 [Cucumis sativus])

HSP 1 Score: 177.2 bits (448), Expect = 1.6e-41
Identity = 89/107 (83.18%), Postives = 95/107 (88.79%), Query Frame = 1


Query: 1   MAADGLLRPVYEACIAGCDTEIDRRPYHRNCGCALHKSRRQSPRCSHSKSKSIFYPIRRS 60
           MAADGLLRP+YEACI GCD+EI RRPYHRNCGCALHKS RQ P CSHSKSKSI YPIRRS
Sbjct: 1   MAADGLLRPIYEACI-GCDSEIHRRPYHRNCGCALHKSSRQPPHCSHSKSKSISYPIRRS 60

Query: 61  WSEGCLALALASASSSPSSSPVIGKTSQPGVALS-DDDDDAPLQLAR 107
           WSEGCL+L LASASSSPSSSPV+GKTSQPG  LS DDDDD+P+  AR
Sbjct: 61  WSEGCLSLVLASASSSPSSSPVVGKTSQPGAPLSEDDDDDSPILFAR 106

[Close]

BLAST of CmoCh05G012740 vs. NCBI nr
Match: gi|703149693|ref|XP_010109667.1| (hypothetical protein L484_003509 [Morus notabilis])

HSP 1 Score: 113.2 bits (282), Expect = 2.8e-22
Identity = 65/108 (60.19%), Postives = 76/108 (70.37%), Query Frame = 1


Query: 2   AADGLLRPVYEACIAGCDTEIDRRPYHRNCGCALHKSRRQSPRCSH---SKSKSIFYPIR 61
           AADG+ + VYE CIAGCDT IDRRPYHRNC CALHKSR+    CS     KSKS+ YPIR
Sbjct: 3   AADGVFKCVYEGCIAGCDTAIDRRPYHRNCTCALHKSRK--IHCSSHGLPKSKSVSYPIR 62

Query: 62  RSWSEGCLALALA-----SASSSPSSSPVI---GKTSQPGVALSDDDD 99
           +SWSEGCLALA A     SA+SSPSSSP +   GK  + G    +++D
Sbjct: 63  KSWSEGCLALAAAAGAAGSAASSPSSSPAVVAGGKIRRLGSCEEEEED 108

[Close]

BLAST of CmoCh05G012740 vs. NCBI nr
Match: gi|702290529|ref|XP_010047178.1| (PREDICTED: uncharacterized protein LOC104436145 [Eucalyptus grandis])

HSP 1 Score: 110.5 bits (275), Expect = 1.8e-21
Identity = 59/90 (65.56%), Postives = 68/90 (75.56%), Query Frame = 1


Query: 2  AADGLLRPVYEACIAGCDTEIDRRPYHRNCGCALH-KSRRQSPRCSHSKSKSIFYPIRRS 61
          AA+ LLR VYE CI+GCD+ I+RRPYHRNCGCALH KS    PR    K KS+ YPIRR+
Sbjct: 5  AAECLLRCVYEGCISGCDSGIERRPYHRNCGCALHKKSGSNCPRPPTGKGKSVSYPIRRA 64

Query: 62 WSEGCLALALASASSSPSSSPVIGKTSQPG 91
          WSEG L L +ASASSSPSSSPV+G+    G
Sbjct: 65 WSEGSLVL-MASASSSPSSSPVVGRPLAAG 93

[Close]

BLAST of CmoCh05G012740 vs. NCBI nr
Match: gi|590579133|ref|XP_007013703.1| (Uncharacterized protein TCM_038276 [Theobroma cacao])

HSP 1 Score: 107.8 bits (268), Expect = 1.2e-20
Identity = 52/80 (65.00%), Postives = 60/80 (75.00%), Query Frame = 1


Query: 2  AADGLLRPVYEACIAGCDTEIDRRPYHRNCGCALHKSRRQSPRCSHSKSKSIFYPIRRSW 61
          AADGL R +YE CIAGCD  I+RRPYHRNC CALH   R +   +  K K++ YPIRR+W
Sbjct: 5  AADGLFRSLYEGCIAGCDIGIERRPYHRNCSCALHDKSRGNCPHAFPKCKNVSYPIRRAW 64

Query: 62 SEGCLALALASASSSPSSSP 82
          SEGCLA+A AS  SSPSSSP
Sbjct: 65 SEGCLAMAAASCHSSPSSSP 84

The following BLAST results are available for this feature:

BLAST of CmoCh05G012740 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh05G012740 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LI78_CUCSA	1.1e-41	83.18	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G009330 PE=4 SV=1	[more]
W9SB18_9ROSA	1.9e-22	60.19	Uncharacterized protein OS=Morus notabilis GN=L484_003509 PE=4 SV=1	[more]
A0A061GQ94_THECC	8.1e-21	65.00	Uncharacterized protein OS=Theobroma cacao GN=TCM_038276 PE=4 SV=1	[more]
I1MI05_SOYBN	6.8e-20	60.23	Uncharacterized protein OS=Glycine max GN=GLYMA_15G202600 PE=4 SV=1	[more]
A0A0B2P2S5_GLYSO	6.8e-20	60.23	Uncharacterized protein OS=Glycine soja GN=glysoja_050045 PE=4 SV=1	[more]

BLAST of CmoCh05G012740 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G46490.1	1.2e-18	45.69	unknown protein	[more]
AT5G35110.1	5.7e-18	47.57	unknown protein	[more]

BLAST of CmoCh05G012740 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659071608\|ref\|XP_008460871.1\|	2.6e-44	86.92	PREDICTED: uncharacterized protein LOC103499614 [Cucumis melo]	[more]
gi\|449443003\|ref\|XP_004139270.1\|	1.6e-41	83.18	PREDICTED: uncharacterized protein LOC101211332 [Cucumis sativus]	[more]
gi\|703149693\|ref\|XP_010109667.1\|	2.8e-22	60.19	hypothetical protein L484_003509 [Morus notabilis]	[more]
gi\|702290529\|ref\|XP_010047178.1\|	1.8e-21	65.56	PREDICTED: uncharacterized protein LOC104436145 [Eucalyptus grandis]	[more]
gi\|590579133\|ref\|XP_007013703.1\|	1.2e-20	65.00	Uncharacterized protein TCM_038276 [Theobroma cacao]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh05G012740.1	CmoCh05G012740.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35121	FAMILY NOT NAMED	coord: 2..84 score: 2.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh05G012740	Cucsa.132680	Cucumber (Gy14) v1	cgycmoB0362
CmoCh05G012740	Cucsa.350700	Cucumber (Gy14) v1	cgycmoB0960
CmoCh05G012740	CmaCh05G012460	Cucurbita maxima (Rimu)	cmacmoB787
CmoCh05G012740	Cla018698	Watermelon (97103) v1	cmowmB768
CmoCh05G012740	Cla013599	Watermelon (97103) v1	cmowmB757
CmoCh05G012740	Csa2G009330	Cucumber (Chinese Long) v2	cmocuB783
CmoCh05G012740	Csa1G265650	Cucumber (Chinese Long) v2	cmocuB773
CmoCh05G012740	MELO3C004444	Melon (DHL92) v3.5.1	cmomeB724
CmoCh05G012740	MELO3C010261	Melon (DHL92) v3.5.1	cmomeB714
CmoCh05G012740	ClCG06G012060	Watermelon (Charleston Gray)	cmowcgB710
CmoCh05G012740	ClCG02G017270	Watermelon (Charleston Gray)	cmowcgB700
CmoCh05G012740	CSPI01G17290	Wild cucumber (PI 183967)	cmocpiB780
CmoCh05G012740	Lsi11G003830	Bottle gourd (USVL1VR-Ls)	cmolsiB706
CmoCh05G012740	Lsi06G010520	Bottle gourd (USVL1VR-Ls)	cmolsiB726
CmoCh05G012740	Cp4.1LG11g10340	Cucurbita pepo (Zucchini)	cmocpeB721
CmoCh05G012740	Cp4.1LG07g11010	Cucurbita pepo (Zucchini)	cmocpeB751
CmoCh05G012740	MELO3C010261.2	Melon (DHL92) v3.6.1	cmomedB811
CmoCh05G012740	MELO3C004444.2	Melon (DHL92) v3.6.1	cmomedB821
CmoCh05G012740	CsaV3_1G028530	Cucumber (Chinese Long) v3	cmocucB0915
CmoCh05G012740	Cla97C02G042960	Watermelon (97103) v2	cmowmbB785
CmoCh05G012740	Carg17457	Silver-seed gourd	carcmoB0357
CmoCh05G012740	Carg23022	Silver-seed gourd	carcmoB1442

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh05G012740	CmoCh11G004890	Cucurbita moschata (Rifu)	cmocmoB130
CmoCh05G012740	CmoCh12G011880	Cucurbita moschata (Rifu)	cmocmoB148

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh05G012740	Cucumber (Chinese Long) v3	cmocucB0924
CmoCh05G012740	Watermelon (97103) v2	cmowmbB791
CmoCh05G012740	Wax gourd	cmowgoB0919
CmoCh05G012740	Cucurbita maxima (Rimu)	cmacmoB095
CmoCh05G012740	Cucurbita maxima (Rimu)	cmacmoB190
CmoCh05G012740	Wild cucumber (PI 183967)	cmocpiB787
CmoCh05G012740	Watermelon (Charleston Gray)	cmowcgB705
CmoCh05G012740	Watermelon (97103) v1	cmowmB752
CmoCh05G012740	Cucurbita pepo (Zucchini)	cmocpeB730
CmoCh05G012740	Bottle gourd (USVL1VR-Ls)	cmolsiB720
CmoCh05G012740	Cucumber (Gy14) v2	cgybcmoB243