MELO3C004351 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C004351
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Methionyl-tRNA formyltransferase
Location	chr5 : 25788954 .. 25789932 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ACAAGATCTCTAAGGCATAAAGAGTGAACATATCACACACTCATTTAGGCTATGGCTGATTTTCGATACGGTTTCTTCGTTCGCCCGGACAACAAGAAGATCGAATCAAATCCTGAAGAAAAGAGCAGAGCAGGCCATATCTCTAACCCCAAATCCAAGCCACCTAATCTTGATGTCGGAGGAAGGCAACGACCTACTGCCATTCTTCCCCGAACGAGGTATGTTACGCCGATCGAGAAACATACTGAAGAAGTTCATACTAAGAAGTATGAACCAATGAAGAATTCTGATAAAGGGACTTTGGATTCAAACCTTGCTATAAACCAGCGTATAGAATTCAATAAACTCTTAGCCAAAGCACAAGAGGAAGTAAGGCTGCCAAAGTATGAAATGAGATTATTAAGTGAACCAATGAATGATATTGGGAAGGCTATAGAGTGTTTGAAAGAAGCTGTGAATCTTGACTGTAGCAAAAATAATGCTTGTTCTGCATCATATCATCATAAAGATAGTTGCACAAAAACTATTGACAGCAAAGAAGCAGCAAGGCGATACGGGACATTCGGGGCACTGGGTCGGGTATCGAGTGCGAATGAAGCAACCATTAACTGCAAAGAGGCTGCTAGGAAGTATAATGGTGCAGAAGTGTGAAACTAAGTGAAAGAGGTTGTACTTTTGTCATGGATGTTTGTGATGATATACTAAGTTTGCAACTGAGTCAAGTCAAAGGTGATATCTTGCTTTTGTTTTATGCAAGTGAAAGGTGAAATGGTACACTCTTTGGAGTTTATAATTACACCCTTTTATATATAATAAAGGAAACTAAAAGTTACCATAGCCAATTGGGGATGGAAGTTGAGGATTAAGAAGGTACTGAAGAAGAGAGAAAAAAATAGATATAAAATAAATGTAAATAAATGGTTTTCATTTATATTTAAGGGTTAGAATACTAAATACAAATTTGAGACTTCAAAGGTGT

mRNA sequence

ACAAGATCTCTAAGGCATAAAGAGTGAACATATCACACACTCATTTAGGCTATGGCTGATTTTCGATACGGTTTCTTCGTTCGCCCGGACAACAAGAAGATCGAATCAAATCCTGAAGAAAAGAGCAGAGCAGGCCATATCTCTAACCCCAAATCCAAGCCACCTAATCTTGATGTCGGAGGAAGGCAACGACCTACTGCCATTCTTCCCCGAACGAGGTATGTTACGCCGATCGAGAAACATACTGAAGAAGTTCATACTAAGAAGTATGAACCAATGAAGAATTCTGATAAAGGGACTTTGGATTCAAACCTTGCTATAAACCAGCGTATAGAATTCAATAAACTCTTAGCCAAAGCACAAGAGGAAGTAAGGCTGCCAAAGTATGAAATGAGATTATTAAGTGAACCAATGAATGATATTGGGAAGGCTATAGAGTGTTTGAAAGAAGCTGTGAATCTTGACTGTAGCAAAAATAATGCTTGTTCTGCATCATATCATCATAAAGATAGTTGCACAAAAACTATTGACAGCAAAGAAGCAGCAAGGCGATACGGGACATTCGGGGCACTGGGTCGGGTATCGAGTGCGAATGAAGCAACCATTAACTGCAAAGAGGCTGCTAGGAAGTATAATGGTGCAGAAGTGTGAAACTAAGTGAAAGAGGTTGTACTTTTGTCATGGATGTTTGTGATGATATACTAAGTTTGCAACTGAGTCAAGTCAAAGGTGATATCTTGCTTTTGTTTTATGCAAGTGAAAGGTGAAATGGTACACTCTTTGGAGTTTATAATTACACCCTTTTATATATAATAAAGGAAACTAAAAGTTACCATAGCCAATTGGGGATGGAAGTTGAGGATTAAGAAGGTACTGAAGAAGAGAGAAAAAAATAGATATAAAATAAATGTAAATAAATGGTTTTCATTTATATTTAAGGGTTAGAATACTAAATACAAATTTGAGACTTCAAAGGTGT

Coding sequence (CDS)

ATGGCTGATTTTCGATACGGTTTCTTCGTTCGCCCGGACAACAAGAAGATCGAATCAAATCCTGAAGAAAAGAGCAGAGCAGGCCATATCTCTAACCCCAAATCCAAGCCACCTAATCTTGATGTCGGAGGAAGGCAACGACCTACTGCCATTCTTCCCCGAACGAGGTATGTTACGCCGATCGAGAAACATACTGAAGAAGTTCATACTAAGAAGTATGAACCAATGAAGAATTCTGATAAAGGGACTTTGGATTCAAACCTTGCTATAAACCAGCGTATAGAATTCAATAAACTCTTAGCCAAAGCACAAGAGGAAGTAAGGCTGCCAAAGTATGAAATGAGATTATTAAGTGAACCAATGAATGATATTGGGAAGGCTATAGAGTGTTTGAAAGAAGCTGTGAATCTTGACTGTAGCAAAAATAATGCTTGTTCTGCATCATATCATCATAAAGATAGTTGCACAAAAACTATTGACAGCAAAGAAGCAGCAAGGCGATACGGGACATTCGGGGCACTGGGTCGGGTATCGAGTGCGAATGAAGCAACCATTAACTGCAAAGAGGCTGCTAGGAAGTATAATGGTGCAGAAGTGTGA

Protein sequence

MADFRYGFFVRPDNKKIESNPEEKSRAGHISNPKSKPPNLDVGGRQRPTAILPRTRYVTPIEKHTEEVHTKKYEPMKNSDKGTLDSNLAINQRIEFNKLLAKAQEEVRLPKYEMRLLSEPMNDIGKAIECLKEAVNLDCSKNNACSASYHHKDSCTKTIDSKEAARRYGTFGALGRVSSANEATINCKEAARKYNGAEV*

Homology

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BLAST of MELO3C004351 vs. TrEMBL
Match: E5GBR2_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 406.4 bits (1043), Expect = 2.1e-110
Identity = 199/199 (100.00%), Postives = 199/199 (100.00%), Query Frame = 1


Query: 1   MADFRYGFFVRPDNKKIESNPEEKSRAGHISNPKSKPPNLDVGGRQRPTAILPRTRYVTP 60
           MADFRYGFFVRPDNKKIESNPEEKSRAGHISNPKSKPPNLDVGGRQRPTAILPRTRYVTP
Sbjct: 1   MADFRYGFFVRPDNKKIESNPEEKSRAGHISNPKSKPPNLDVGGRQRPTAILPRTRYVTP 60

Query: 61  IEKHTEEVHTKKYEPMKNSDKGTLDSNLAINQRIEFNKLLAKAQEEVRLPKYEMRLLSEP 120
           IEKHTEEVHTKKYEPMKNSDKGTLDSNLAINQRIEFNKLLAKAQEEVRLPKYEMRLLSEP
Sbjct: 61  IEKHTEEVHTKKYEPMKNSDKGTLDSNLAINQRIEFNKLLAKAQEEVRLPKYEMRLLSEP 120

Query: 121 MNDIGKAIECLKEAVNLDCSKNNACSASYHHKDSCTKTIDSKEAARRYGTFGALGRVSSA 180
           MNDIGKAIECLKEAVNLDCSKNNACSASYHHKDSCTKTIDSKEAARRYGTFGALGRVSSA
Sbjct: 121 MNDIGKAIECLKEAVNLDCSKNNACSASYHHKDSCTKTIDSKEAARRYGTFGALGRVSSA 180

Query: 181 NEATINCKEAARKYNGAEV 200
           NEATINCKEAARKYNGAEV
Sbjct: 181 NEATINCKEAARKYNGAEV 199

[Close]

BLAST of MELO3C004351 vs. TrEMBL
Match: A0A0A0LG87_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G012700 PE=4 SV=1)

HSP 1 Score: 339.7 bits (870), Expect = 2.4e-90
Identity = 170/200 (85.00%), Postives = 181/200 (90.50%), Query Frame = 1


Query: 1   MADFRYGFFVRPDNKKIESNPEE-KSRAGHISNPKSKPPNLDVGGRQRPTAILPRTRYVT 60
           MADFRYGFFVRPDNKKIESNP E KS+AGHIS+PKSKPP LD GGRQ+P AILPRTRYVT
Sbjct: 1   MADFRYGFFVRPDNKKIESNPAELKSKAGHISDPKSKPPYLDAGGRQQPIAILPRTRYVT 60

Query: 61  PIEKHTEEVHTKKYEPMKNSDKGTLDSNLAINQRIEFNKLLAKAQEEVRLPKYEMRLLSE 120
           PIEK+TEEVHTKKYEP+KNSDKGTL+S+LAINQRIEFNKLLA  Q+E RLPKYEMRLLSE
Sbjct: 61  PIEKYTEEVHTKKYEPVKNSDKGTLNSHLAINQRIEFNKLLANVQKEARLPKYEMRLLSE 120

Query: 121 PMNDIGKAIECLKEAVNLDCSKNNACSASYHHKDSCTKTIDSKEAARRYGTFGALGRVSS 180
           PM DIGKAIECLKE VNLDCSKNNAC+AS   KDSCTKTIDSKEAARRYG FGA   VS+
Sbjct: 121 PMTDIGKAIECLKEVVNLDCSKNNACAASARRKDSCTKTIDSKEAARRYGKFGAPVPVSN 180

Query: 181 ANEATINCKEAARKYNGAEV 200
           AN ATI+CKEAARKYNGA V
Sbjct: 181 ANVATIDCKEAARKYNGAAV 200

[Close]

BLAST of MELO3C004351 vs. NCBI nr
Match: gi|307136053|gb|ADN33904.1| (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 406.4 bits (1043), Expect = 2.9e-110
Identity = 199/199 (100.00%), Postives = 199/199 (100.00%), Query Frame = 1


Query: 1   MADFRYGFFVRPDNKKIESNPEEKSRAGHISNPKSKPPNLDVGGRQRPTAILPRTRYVTP 60
           MADFRYGFFVRPDNKKIESNPEEKSRAGHISNPKSKPPNLDVGGRQRPTAILPRTRYVTP
Sbjct: 1   MADFRYGFFVRPDNKKIESNPEEKSRAGHISNPKSKPPNLDVGGRQRPTAILPRTRYVTP 60

Query: 61  IEKHTEEVHTKKYEPMKNSDKGTLDSNLAINQRIEFNKLLAKAQEEVRLPKYEMRLLSEP 120
           IEKHTEEVHTKKYEPMKNSDKGTLDSNLAINQRIEFNKLLAKAQEEVRLPKYEMRLLSEP
Sbjct: 61  IEKHTEEVHTKKYEPMKNSDKGTLDSNLAINQRIEFNKLLAKAQEEVRLPKYEMRLLSEP 120

Query: 121 MNDIGKAIECLKEAVNLDCSKNNACSASYHHKDSCTKTIDSKEAARRYGTFGALGRVSSA 180
           MNDIGKAIECLKEAVNLDCSKNNACSASYHHKDSCTKTIDSKEAARRYGTFGALGRVSSA
Sbjct: 121 MNDIGKAIECLKEAVNLDCSKNNACSASYHHKDSCTKTIDSKEAARRYGTFGALGRVSSA 180

Query: 181 NEATINCKEAARKYNGAEV 200
           NEATINCKEAARKYNGAEV
Sbjct: 181 NEATINCKEAARKYNGAEV 199

[Close]

BLAST of MELO3C004351 vs. NCBI nr
Match: gi|700205719|gb|KGN60838.1| (hypothetical protein Csa_2G012700 [Cucumis sativus])

HSP 1 Score: 339.7 bits (870), Expect = 3.4e-90
Identity = 170/200 (85.00%), Postives = 181/200 (90.50%), Query Frame = 1


Query: 1   MADFRYGFFVRPDNKKIESNPEE-KSRAGHISNPKSKPPNLDVGGRQRPTAILPRTRYVT 60
           MADFRYGFFVRPDNKKIESNP E KS+AGHIS+PKSKPP LD GGRQ+P AILPRTRYVT
Sbjct: 1   MADFRYGFFVRPDNKKIESNPAELKSKAGHISDPKSKPPYLDAGGRQQPIAILPRTRYVT 60

Query: 61  PIEKHTEEVHTKKYEPMKNSDKGTLDSNLAINQRIEFNKLLAKAQEEVRLPKYEMRLLSE 120
           PIEK+TEEVHTKKYEP+KNSDKGTL+S+LAINQRIEFNKLLA  Q+E RLPKYEMRLLSE
Sbjct: 61  PIEKYTEEVHTKKYEPVKNSDKGTLNSHLAINQRIEFNKLLANVQKEARLPKYEMRLLSE 120

Query: 121 PMNDIGKAIECLKEAVNLDCSKNNACSASYHHKDSCTKTIDSKEAARRYGTFGALGRVSS 180
           PM DIGKAIECLKE VNLDCSKNNAC+AS   KDSCTKTIDSKEAARRYG FGA   VS+
Sbjct: 121 PMTDIGKAIECLKEVVNLDCSKNNACAASARRKDSCTKTIDSKEAARRYGKFGAPVPVSN 180

Query: 181 ANEATINCKEAARKYNGAEV 200
           AN ATI+CKEAARKYNGA V
Sbjct: 181 ANVATIDCKEAARKYNGAAV 200

The following BLAST results are available for this feature:

BLAST of MELO3C004351 vs. TrEMBL


Match Name	E-value	Identity	Description
E5GBR2_CUCME	2.1e-110	100.00	Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
A0A0A0LG87_CUCSA	2.4e-90	85.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G012700 PE=4 SV=1	[more]

BLAST of MELO3C004351 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|307136053\|gb\|ADN33904.1\|	2.9e-110	100.00	hypothetical protein [Cucumis melo subsp. melo]	[more]
gi\|700205719\|gb\|KGN60838.1\|	3.4e-90	85.00	hypothetical protein Csa_2G012700 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
MU62228	melon EST collection version 4.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C004351T1	MELO3C004351T1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
MU62228	MU62228	transcribed_cluster

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C004351	Csa2G012700	Cucumber (Chinese Long) v2	cumeB139
MELO3C004351	Cla019835	Watermelon (97103) v1	mewmB418
MELO3C004351	ClCG02G016310	Watermelon (Charleston Gray)	mewcgB375
MELO3C004351	Cla97C02G042150	Watermelon (97103) v2	mewmbB376
MELO3C004351	Bhi06G001489	Wax gourd	mewgoB454
MELO3C004351	CSPI02G03280	Wild cucumber (PI 183967)	cpimeB139
MELO3C004351	CmaCh05G011760	Cucurbita maxima (Rimu)	cmameB735
MELO3C004351	CmoCh05G012010	Cucurbita moschata (Rifu)	cmomeB724
MELO3C004351	Lsi11G004770	Bottle gourd (USVL1VR-Ls)	lsimeB115
MELO3C004351	Cp4.1LG11g09640	Cucurbita pepo (Zucchini)	cpemeB099
MELO3C004351	CsGy2G003390	Cucumber (Gy14) v2	cgybmeB120
MELO3C004351	CsaV3_2G004430	Cucumber (Chinese Long) v3	cucmeB141

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C004351	Cucurbita pepo (Zucchini)	cpemeB771
MELO3C004351	Silver-seed gourd	carmeB0298
MELO3C004351	Silver-seed gourd	carmeB0711
MELO3C004351	Cucumber (Chinese Long) v3	cucmeB078
MELO3C004351	Cucumber (Gy14) v1	cgymeB216
MELO3C004351	Cucurbita maxima (Rimu)	cmameB172
MELO3C004351	Cucurbita moschata (Rifu)	cmomeB161
MELO3C004351	Watermelon (Charleston Gray)	mewcgB382