Cp4.1LG11g09640 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG11g09640
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Unknown protein
Location	Cp4.1LG11 : 8166766 .. 8167413 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCGATTTTCGATATGGTTTCTTTTGTCGCCCCGACAACAAGAACTTAGAACCACAACAGGAAGAAAAGAACACAACAAGCCATATCCCTGATCCCAAATACAAACCAGCTCATGTCGATGCCGGAGGAAGACGACTTCCGACCGTCGTTCTGCCCAGACCAAGGTATGTTACTACAACTGAGACATATACTGAAGAATTTTACTCAAATTCAAGGGATGGCTTTCAATATAGCCATACCAAGAACTCTGAACCAGTGAAGTCTTATGGACTTCACCATGATAAAGGGATTCGGCATCCAAGTCGCCCCGCTCTTAATCGCCCAACTGAGTTCAATAGACTCTTAGTCAAAGTCGAAATGGAAGAAGACCAGGTAAAACATGAAATGAGGATAAGTAAACCAATGAATGATATTGAGAAGGCTATAGAGTTCTTTAAAGAAGCTGTAAACCTTCCCTATTGCAAAAACAATGCTTGTCACGCACCAGATCATCCTAAGAAAGATGGCTACACAAAAACTATTGACAGCAACGAAGCAGCACGTCGGTTCGGGAACTTCGGCATACCACCTCCGGTGCCGAGTGCCAACGGAGCAACCATTAACTGCAAAGAGGCTGCAAGGAAGTATAAAGGTGTAACAGTGTGA

mRNA sequence

ATGGCCGATTTTCGATATGGTTTCTTTTGTCGCCCCGACAACAAGAACTTAGAACCACAACAGGAAGAAAAGAACACAACAAGCCATATCCCTGATCCCAAATACAAACCAGCTCATGTCGATGCCGGAGGAAGACGACTTCCGACCGTCGTTCTGCCCAGACCAAGGTATGTTACTACAACTGAGACATATACTGAAGAATTTTACTCAAATTCAAGGGATGGCTTTCAATATAGCCATACCAAGAACTCTGAACCAGTGAAGTCTTATGGACTTCACCATGATAAAGGGATTCGGCATCCAAGTCGCCCCGCTCTTAATCGCCCAACTGAGTTCAATAGACTCTTAGTCAAAGTCGAAATGGAAGAAGACCAGGTAAAACATGAAATGAGGATAAGTAAACCAATGAATGATATTGAGAAGGCTATAGAGTTCTTTAAAGAAGCTGTAAACCTTCCCTATTGCAAAAACAATGCTTGTCACGCACCAGATCATCCTAAGAAAGATGGCTACACAAAAACTATTGACAGCAACGAAGCAGCACGTCGGTTCGGGAACTTCGGCATACCACCTCCGGTGCCGAGTGCCAACGGAGCAACCATTAACTGCAAAGAGGCTGCAAGGAAGTATAAAGGTGTAACAGTGTGA

Coding sequence (CDS)

ATGGCCGATTTTCGATATGGTTTCTTTTGTCGCCCCGACAACAAGAACTTAGAACCACAACAGGAAGAAAAGAACACAACAAGCCATATCCCTGATCCCAAATACAAACCAGCTCATGTCGATGCCGGAGGAAGACGACTTCCGACCGTCGTTCTGCCCAGACCAAGGTATGTTACTACAACTGAGACATATACTGAAGAATTTTACTCAAATTCAAGGGATGGCTTTCAATATAGCCATACCAAGAACTCTGAACCAGTGAAGTCTTATGGACTTCACCATGATAAAGGGATTCGGCATCCAAGTCGCCCCGCTCTTAATCGCCCAACTGAGTTCAATAGACTCTTAGTCAAAGTCGAAATGGAAGAAGACCAGGTAAAACATGAAATGAGGATAAGTAAACCAATGAATGATATTGAGAAGGCTATAGAGTTCTTTAAAGAAGCTGTAAACCTTCCCTATTGCAAAAACAATGCTTGTCACGCACCAGATCATCCTAAGAAAGATGGCTACACAAAAACTATTGACAGCAACGAAGCAGCACGTCGGTTCGGGAACTTCGGCATACCACCTCCGGTGCCGAGTGCCAACGGAGCAACCATTAACTGCAAAGAGGCTGCAAGGAAGTATAAAGGTGTAACAGTGTGA

Protein sequence

MADFRYGFFCRPDNKNLEPQQEEKNTTSHIPDPKYKPAHVDAGGRRLPTVVLPRPRYVTTTETYTEEFYSNSRDGFQYSHTKNSEPVKSYGLHHDKGIRHPSRPALNRPTEFNRLLVKVEMEEDQVKHEMRISKPMNDIEKAIEFFKEAVNLPYCKNNACHAPDHPKKDGYTKTIDSNEAARRFGNFGIPPPVPSANGATINCKEAARKYKGVTV

Homology

[Close]

BLAST of Cp4.1LG11g09640 vs. TrEMBL
Match: E5GBR2_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 205.7 bits (522), Expect = 5.7e-50
Identity = 121/216 (56.02%), Postives = 139/216 (64.35%), Query Frame = 1


Query: 1   MADFRYGFFCRPDNKNLEPQQEEKNTTSHIPDPKYKPAHVDAGGRRLPTVVLPRPRYVTT 60
           MADFRYGFF RPDNK +E   EEK+   HI +PK KP ++D GGR+ PT +LPR RYVT 
Sbjct: 1   MADFRYGFFVRPDNKKIESNPEEKSRAGHISNPKSKPPNLDVGGRQRPTAILPRTRYVTP 60

Query: 61  TETYTEEFYSNSRDGFQYSHTKNSEPVKSYGLHHDKGIRHPSRPALNRPTEFNRLLVKVE 120
            E +TEE            HTK  EP+K    + DKG    S  A+N+  EFN+LL K +
Sbjct: 61  IEKHTEEV-----------HTKKYEPMK----NSDKGTL-DSNLAINQRIEFNKLLAKAQ 120

Query: 121 MEEDQVKHEMR-ISKPMNDIEKAIEFFKEAVNLPYCKNNACHAPDHPKKDGYTKTIDSNE 180
            E    K+EMR +S+PMNDI KAIE  KEAVNL   KNNAC A  H  KD  TKTIDS E
Sbjct: 121 EEVRLPKYEMRLLSEPMNDIGKAIECLKEAVNLDCSKNNACSASYH-HKDSCTKTIDSKE 180

Query: 181 AARRFGNFGIPPPVPSANGATINCKEAARKYKGVTV 216
           AARR+G FG    V SAN ATINCKEAARKY G  V
Sbjct: 181 AARRYGTFGALGRVSSANEATINCKEAARKYNGAEV 199

[Close]

BLAST of Cp4.1LG11g09640 vs. TrEMBL
Match: A0A0A0LG87_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G012700 PE=4 SV=1)

HSP 1 Score: 203.0 bits (515), Expect = 3.7e-49
Identity = 120/217 (55.30%), Postives = 139/217 (64.06%), Query Frame = 1


Query: 1   MADFRYGFFCRPDNKNLEPQQEE-KNTTSHIPDPKYKPAHVDAGGRRLPTVVLPRPRYVT 60
           MADFRYGFF RPDNK +E    E K+   HI DPK KP ++DAGGR+ P  +LPR RYVT
Sbjct: 1   MADFRYGFFVRPDNKKIESNPAELKSKAGHISDPKSKPPYLDAGGRQQPIAILPRTRYVT 60

Query: 61  TTETYTEEFYSNSRDGFQYSHTKNSEPVKSYGLHHDKGIRHPSRPALNRPTEFNRLLVKV 120
             E YTEE            HTK  EPVK+     DKG  + S  A+N+  EFN+LL  V
Sbjct: 61  PIEKYTEEV-----------HTKKYEPVKN----SDKGTLN-SHLAINQRIEFNKLLANV 120

Query: 121 EMEEDQVKHEMRI-SKPMNDIEKAIEFFKEAVNLPYCKNNACHAPDHPKKDGYTKTIDSN 180
           + E    K+EMR+ S+PM DI KAIE  KE VNL   KNNAC A    +KD  TKTIDS 
Sbjct: 121 QKEARLPKYEMRLLSEPMTDIGKAIECLKEVVNLDCSKNNACAASAR-RKDSCTKTIDSK 180

Query: 181 EAARRFGNFGIPPPVPSANGATINCKEAARKYKGVTV 216
           EAARR+G FG P PV +AN ATI+CKEAARKY G  V
Sbjct: 181 EAARRYGKFGAPVPVSNANVATIDCKEAARKYNGAAV 200

[Close]

BLAST of Cp4.1LG11g09640 vs. TrEMBL
Match: A0A0D2W7V1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G202300 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 2.2e-09
Identity = 36/88 (40.91%), Postives = 50/88 (56.82%), Query Frame = 1


Query: 128 HEMRISKPMNDIEKAIEFFKEAVNLPYCKNNACHAPDHPKKDGYTKTIDSNEAARRFGNF 187
           HE  +S+P ++I  A+E+ KEAV            P  P+ DGY  TIDS EA R++G  
Sbjct: 253 HEANLSQPTSNINTAVEYLKEAVK-----------PPAPRYDGYPNTIDSREAERKYGGL 312

Query: 188 GIPPPVPSANGATINCKEAARKYKGVTV 216
            +  P   + G TI+ +EAARKY+G  V
Sbjct: 313 AVGTPPIGSYGRTIDSREAARKYRGTAV 329

[Close]

BLAST of Cp4.1LG11g09640 vs. TrEMBL
Match: A0A067EDT6_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g043550mg PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 4.6e-07
Identity = 37/99 (37.37%), Postives = 50/99 (50.51%), Query Frame = 1


Query: 126 VKHEMRISKPMNDIEKAIEFFKEAVNLPYCKNNACHAPDH---------PKKDGYTKTID 185
           V  +  +S P NDI  A+ + +E         +   AP           P++D Y +TID
Sbjct: 269 VPPDASLSSPTNDINTAVRYLQEGAR----PTSVTTAPQSRVTVPITTGPRRDDYGQTID 328

Query: 186 SNEAARRFGNFGIPPPVPSANGATINCKEAARKYKGVTV 216
           S EAARR+GN G  P        TI+ +EAARKY+G TV
Sbjct: 329 SREAARRYGNLGSSPVPEERYTGTIDSREAARKYRGTTV 363

[Close]

BLAST of Cp4.1LG11g09640 vs. TrEMBL
Match: V4T4K4_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10001604mg PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 4.6e-07
Identity = 37/99 (37.37%), Postives = 50/99 (50.51%), Query Frame = 1


Query: 126 VKHEMRISKPMNDIEKAIEFFKEAVNLPYCKNNACHAPDH---------PKKDGYTKTID 185
           V  +  +S P NDI  A+ + +E         +   AP           P++D Y +TID
Sbjct: 269 VPPDASLSSPTNDINTAVRYLQEGAR----PTSVTTAPQSRVTVPITTGPRRDDYGQTID 328

Query: 186 SNEAARRFGNFGIPPPVPSANGATINCKEAARKYKGVTV 216
           S EAARR+GN G  P        TI+ +EAARKY+G TV
Sbjct: 329 SREAARRYGNLGSSPVPEERYTGTIDSREAARKYRGTTV 363

[Close]

BLAST of Cp4.1LG11g09640 vs. NCBI nr
Match: gi|307136053|gb|ADN33904.1| (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 205.7 bits (522), Expect = 8.2e-50
Identity = 121/216 (56.02%), Postives = 139/216 (64.35%), Query Frame = 1


Query: 1   MADFRYGFFCRPDNKNLEPQQEEKNTTSHIPDPKYKPAHVDAGGRRLPTVVLPRPRYVTT 60
           MADFRYGFF RPDNK +E   EEK+   HI +PK KP ++D GGR+ PT +LPR RYVT 
Sbjct: 1   MADFRYGFFVRPDNKKIESNPEEKSRAGHISNPKSKPPNLDVGGRQRPTAILPRTRYVTP 60

Query: 61  TETYTEEFYSNSRDGFQYSHTKNSEPVKSYGLHHDKGIRHPSRPALNRPTEFNRLLVKVE 120
            E +TEE            HTK  EP+K    + DKG    S  A+N+  EFN+LL K +
Sbjct: 61  IEKHTEEV-----------HTKKYEPMK----NSDKGTL-DSNLAINQRIEFNKLLAKAQ 120

Query: 121 MEEDQVKHEMR-ISKPMNDIEKAIEFFKEAVNLPYCKNNACHAPDHPKKDGYTKTIDSNE 180
            E    K+EMR +S+PMNDI KAIE  KEAVNL   KNNAC A  H  KD  TKTIDS E
Sbjct: 121 EEVRLPKYEMRLLSEPMNDIGKAIECLKEAVNLDCSKNNACSASYH-HKDSCTKTIDSKE 180

Query: 181 AARRFGNFGIPPPVPSANGATINCKEAARKYKGVTV 216
           AARR+G FG    V SAN ATINCKEAARKY G  V
Sbjct: 181 AARRYGTFGALGRVSSANEATINCKEAARKYNGAEV 199

[Close]

BLAST of Cp4.1LG11g09640 vs. NCBI nr
Match: gi|700205719|gb|KGN60838.1| (hypothetical protein Csa_2G012700 [Cucumis sativus])

HSP 1 Score: 203.0 bits (515), Expect = 5.3e-49
Identity = 120/217 (55.30%), Postives = 139/217 (64.06%), Query Frame = 1


Query: 1   MADFRYGFFCRPDNKNLEPQQEE-KNTTSHIPDPKYKPAHVDAGGRRLPTVVLPRPRYVT 60
           MADFRYGFF RPDNK +E    E K+   HI DPK KP ++DAGGR+ P  +LPR RYVT
Sbjct: 1   MADFRYGFFVRPDNKKIESNPAELKSKAGHISDPKSKPPYLDAGGRQQPIAILPRTRYVT 60

Query: 61  TTETYTEEFYSNSRDGFQYSHTKNSEPVKSYGLHHDKGIRHPSRPALNRPTEFNRLLVKV 120
             E YTEE            HTK  EPVK+     DKG  + S  A+N+  EFN+LL  V
Sbjct: 61  PIEKYTEEV-----------HTKKYEPVKN----SDKGTLN-SHLAINQRIEFNKLLANV 120

Query: 121 EMEEDQVKHEMRI-SKPMNDIEKAIEFFKEAVNLPYCKNNACHAPDHPKKDGYTKTIDSN 180
           + E    K+EMR+ S+PM DI KAIE  KE VNL   KNNAC A    +KD  TKTIDS 
Sbjct: 121 QKEARLPKYEMRLLSEPMTDIGKAIECLKEVVNLDCSKNNACAASAR-RKDSCTKTIDSK 180

Query: 181 EAARRFGNFGIPPPVPSANGATINCKEAARKYKGVTV 216
           EAARR+G FG P PV +AN ATI+CKEAARKY G  V
Sbjct: 181 EAARRYGKFGAPVPVSNANVATIDCKEAARKYNGAAV 200

[Close]

BLAST of Cp4.1LG11g09640 vs. NCBI nr
Match: gi|823264460|ref|XP_012464974.1| (PREDICTED: uncharacterized protein LOC105783841 isoform X2 [Gossypium raimondii])

HSP 1 Score: 70.9 bits (172), Expect = 3.2e-09
Identity = 36/88 (40.91%), Postives = 50/88 (56.82%), Query Frame = 1


Query: 128 HEMRISKPMNDIEKAIEFFKEAVNLPYCKNNACHAPDHPKKDGYTKTIDSNEAARRFGNF 187
           HE  +S+P ++I  A+E+ KEAV            P  P+ DGY  TIDS EA R++G  
Sbjct: 253 HEANLSQPTSNINTAVEYLKEAVK-----------PPAPRYDGYPNTIDSREAERKYGGL 312

Query: 188 GIPPPVPSANGATINCKEAARKYKGVTV 216
            +  P   + G TI+ +EAARKY+G  V
Sbjct: 313 AVGTPPIGSYGRTIDSREAARKYRGTAV 329

[Close]

BLAST of Cp4.1LG11g09640 vs. NCBI nr
Match: gi|763815703|gb|KJB82555.1| (hypothetical protein B456_013G202300 [Gossypium raimondii])

HSP 1 Score: 70.9 bits (172), Expect = 3.2e-09
Identity = 36/88 (40.91%), Postives = 50/88 (56.82%), Query Frame = 1


Query: 128 HEMRISKPMNDIEKAIEFFKEAVNLPYCKNNACHAPDHPKKDGYTKTIDSNEAARRFGNF 187
           HE  +S+P ++I  A+E+ KEAV            P  P+ DGY  TIDS EA R++G  
Sbjct: 253 HEANLSQPTSNINTAVEYLKEAVK-----------PPAPRYDGYPNTIDSREAERKYGGL 312

Query: 188 GIPPPVPSANGATINCKEAARKYKGVTV 216
            +  P   + G TI+ +EAARKY+G  V
Sbjct: 313 AVGTPPIGSYGRTIDSREAARKYRGTAV 329

[Close]

BLAST of Cp4.1LG11g09640 vs. NCBI nr
Match: gi|823264458|ref|XP_012464973.1| (PREDICTED: uncharacterized protein LOC105783841 isoform X1 [Gossypium raimondii])

HSP 1 Score: 70.9 bits (172), Expect = 3.2e-09
Identity = 36/88 (40.91%), Postives = 50/88 (56.82%), Query Frame = 1


Query: 128 HEMRISKPMNDIEKAIEFFKEAVNLPYCKNNACHAPDHPKKDGYTKTIDSNEAARRFGNF 187
           HE  +S+P ++I  A+E+ KEAV            P  P+ DGY  TIDS EA R++G  
Sbjct: 268 HEANLSQPTSNINTAVEYLKEAVK-----------PPAPRYDGYPNTIDSREAERKYGGL 327

Query: 188 GIPPPVPSANGATINCKEAARKYKGVTV 216
            +  P   + G TI+ +EAARKY+G  V
Sbjct: 328 AVGTPPIGSYGRTIDSREAARKYRGTAV 344

The following BLAST results are available for this feature:

BLAST of Cp4.1LG11g09640 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG11g09640 vs. TrEMBL


Match Name	E-value	Identity	Description
E5GBR2_CUCME	5.7e-50	56.02	Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
A0A0A0LG87_CUCSA	3.7e-49	55.30	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G012700 PE=4 SV=1	[more]
A0A0D2W7V1_GOSRA	2.2e-09	40.91	Uncharacterized protein OS=Gossypium raimondii GN=B456_013G202300 PE=4 SV=1	[more]
A0A067EDT6_CITSI	4.6e-07	37.37	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g043550mg PE=4 SV=1	[more]
V4T4K4_9ROSI	4.6e-07	37.37	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10001604mg PE=4 SV=1	[more]

BLAST of Cp4.1LG11g09640 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG11g09640 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|307136053\|gb\|ADN33904.1\|	8.2e-50	56.02	hypothetical protein [Cucumis melo subsp. melo]	[more]
gi\|700205719\|gb\|KGN60838.1\|	5.3e-49	55.30	hypothetical protein Csa_2G012700 [Cucumis sativus]	[more]
gi\|823264460\|ref\|XP_012464974.1\|	3.2e-09	40.91	PREDICTED: uncharacterized protein LOC105783841 isoform X2 [Gossypium raimondii]	[more]
gi\|763815703\|gb\|KJB82555.1\|	3.2e-09	40.91	hypothetical protein B456_013G202300 [Gossypium raimondii]	[more]
gi\|823264458\|ref\|XP_012464973.1\|	3.2e-09	40.91	PREDICTED: uncharacterized protein LOC105783841 isoform X1 [Gossypium raimondii]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG11g09640.1	Cp4.1LG11g09640.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG11g09640	CmaCh05G011760	Cucurbita maxima (Rimu)	cmacpeB767
Cp4.1LG11g09640	CmoCh05G012010	Cucurbita moschata (Rifu)	cmocpeB721
Cp4.1LG11g09640	Cla019835	Watermelon (97103) v1	cpewmB113
Cp4.1LG11g09640	Csa2G012700	Cucumber (Chinese Long) v2	cpecuB103
Cp4.1LG11g09640	MELO3C004351	Melon (DHL92) v3.5.1	cpemeB099
Cp4.1LG11g09640	ClCG02G016310	Watermelon (Charleston Gray)	cpewcgB104
Cp4.1LG11g09640	CSPI02G03280	Wild cucumber (PI 183967)	cpecpiB100
Cp4.1LG11g09640	Lsi11G004770	Bottle gourd (USVL1VR-Ls)	cpelsiB074
Cp4.1LG11g09640	MELO3C004351.2	Melon (DHL92) v3.6.1	cpemedB123
Cp4.1LG11g09640	CsaV3_2G004430	Cucumber (Chinese Long) v3	cpecucB0114
Cp4.1LG11g09640	Bhi06G001489	Wax gourd	cpewgoB0114
Cp4.1LG11g09640	CsGy2G003390	Cucumber (Gy14) v2	cgybcpeB168

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG11g09640	Silver-seed gourd	carcpeB0410
Cp4.1LG11g09640	Silver-seed gourd	carcpeB1005
Cp4.1LG11g09640	Cucurbita pepo (Zucchini)	cpecpeB001
Cp4.1LG11g09640	Cucurbita pepo (Zucchini)	cpecpeB139
Cp4.1LG11g09640	Cucumber (Gy14) v1	cgycpeB0351
Cp4.1LG11g09640	Cucurbita maxima (Rimu)	cmacpeB171
Cp4.1LG11g09640	Cucurbita moschata (Rifu)	cmocpeB051
Cp4.1LG11g09640	Cucurbita moschata (Rifu)	cmocpeB147