MELO3C003272 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C003272
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	50S ribosomal protein L10
Location	chr8 : 31959554 .. 31959838 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGAAACTGTGTGGGAGTTCACATCTGAGTCCGCTGGAGCGTAGACTCGCCAGAAGAAAGGGAGAAGAAGCTACACACGCCACCATTCAAGGCAAACGCCGGAATTCGCCGGAAATTGAAGTTGCCGACGCTCGTGGGTGCGATGCCGTCGTAACGCCGTCGAAGAAGAAAGGAACCTCCTTCGTGCGTGGGTTACGCCGGCGATGGTTGAGCAGCACCATCCAGTTCATTGAAGAACTCGCACCGCTGCCGAAACTGTTCCGCTTGGGTGTCGAATCGTAA

mRNA sequence

ATGTTGAAACTGTGTGGGAGTTCACATCTGAGTCCGCTGGAGCGTAGACTCGCCAGAAGAAAGGGAGAAGAAGCTACACACGCCACCATTCAAGGCAAACGCCGGAATTCGCCGGAAATTGAAGTTGCCGACGCTCGTGGGTGCGATGCCGTCGTAACGCCGTCGAAGAAGAAAGGAACCTCCTTCGTGCGTGGGTTACGCCGGCGATGGTTGAGCAGCACCATCCAGTTCATTGAAGAACTCGCACCGCTGCCGAAACTGTTCCGCTTGGGTGTCGAATCGTAA

Coding sequence (CDS)

ATGTTGAAACTGTGTGGGAGTTCACATCTGAGTCCGCTGGAGCGTAGACTCGCCAGAAGAAAGGGAGAAGAAGCTACACACGCCACCATTCAAGGCAAACGCCGGAATTCGCCGGAAATTGAAGTTGCCGACGCTCGTGGGTGCGATGCCGTCGTAACGCCGTCGAAGAAGAAAGGAACCTCCTTCGTGCGTGGGTTACGCCGGCGATGGTTGAGCAGCACCATCCAGTTCATTGAAGAACTCGCACCGCTGCCGAAACTGTTCCGCTTGGGTGTCGAATCGTAA

Protein sequence

MLKLCGSSHLSPLERRLARRKGEEATHATIQGKRRNSPEIEVADARGCDAVVTPSKKKGTSFVRGLRRRWLSSTIQFIEELAPLPKLFRLGVES*

Homology

[Close]

BLAST of MELO3C003272 vs. TrEMBL
Match: A0A0A0KYI6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G439070 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 4.2e-13
Identity = 49/94 (52.13%), Postives = 58/94 (61.70%), Query Frame = 1


Query: 1  MLKLCGSSHLSPLERRLARRKGEEATHATIQGKRRNSPEIEVADARGCDAVVTPSKKKGT 60
          MLK CGSSHLSPLERRLARR+ EEAT ATIQGKR NSPEIEV DAR C       ++   
Sbjct: 1  MLKPCGSSHLSPLERRLARREEEEATQATIQGKRWNSPEIEVTDARECGYCRNAVEEDTN 60

Query: 61 SFVRGLRRRWLSSTIQFIEELAPLPKLFRLGVES 95
           F     R W+  T   +E+  P+ +  R   E+
Sbjct: 61 LF-----RAWV--TRAMVEQRHPVHRRARTAAET 87

[Close]

BLAST of MELO3C003272 vs. NCBI nr
Match: gi|700199582|gb|KGN54740.1| (hypothetical protein Csa_4G439070 [Cucumis sativus])

HSP 1 Score: 82.0 bits (201), Expect = 6.0e-13
Identity = 49/94 (52.13%), Postives = 58/94 (61.70%), Query Frame = 1


Query: 1  MLKLCGSSHLSPLERRLARRKGEEATHATIQGKRRNSPEIEVADARGCDAVVTPSKKKGT 60
          MLK CGSSHLSPLERRLARR+ EEAT ATIQGKR NSPEIEV DAR C       ++   
Sbjct: 1  MLKPCGSSHLSPLERRLARREEEEATQATIQGKRWNSPEIEVTDARECGYCRNAVEEDTN 60

Query: 61 SFVRGLRRRWLSSTIQFIEELAPLPKLFRLGVES 95
           F     R W+  T   +E+  P+ +  R   E+
Sbjct: 61 LF-----RAWV--TRAMVEQRHPVHRRARTAAET 87

The following BLAST results are available for this feature:

BLAST of MELO3C003272 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KYI6_CUCSA	4.2e-13	52.13	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G439070 PE=4 SV=1	[more]

BLAST of MELO3C003272 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700199582\|gb\|KGN54740.1\|	6.0e-13	52.13	hypothetical protein Csa_4G439070 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C003272T1	MELO3C003272T1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C003272	CSPI04G19520	Wild cucumber (PI 183967)	cpimeB325
MELO3C003272	CsaV3_4G029890	Cucumber (Chinese Long) v3	cucmeB329

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C003272	Cucumber (Gy14) v2	cgybmeB281
MELO3C003272	Silver-seed gourd	carmeB0480
MELO3C003272	Silver-seed gourd	carmeB0521
MELO3C003272	Watermelon (97103) v2	mewmbB543
MELO3C003272	Cucumber (Gy14) v1	cgymeB303
MELO3C003272	Cucurbita maxima (Rimu)	cmameB616
MELO3C003272	Cucurbita maxima (Rimu)	cmameB812
MELO3C003272	Cucurbita moschata (Rifu)	cmomeB611
MELO3C003272	Cucurbita moschata (Rifu)	cmomeB796
MELO3C003272	Cucumber (Chinese Long) v2	cumeB328
MELO3C003272	Watermelon (Charleston Gray)	mewcgB535
MELO3C003272	Cucurbita pepo (Zucchini)	cpemeB066
MELO3C003272	Cucurbita pepo (Zucchini)	cpemeB453
MELO3C003272	Bottle gourd (USVL1VR-Ls)	lsimeB153