CsaV3_4G029890 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_4G029890
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr4 : 19606859 .. 19607155 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGAAACCGTGTGGAAGTTCACATCTGAGTCCGCTGGAGCGTAGACTCGCCAGAAGAGAGGAAGAAGAAGCCACACAGGCTACCATTCAAGGCAAACGCTGGAATTCGCCGGAAATTGAAGTTACCGATGCTCGTGAGTGCGGATACTGTCGTAACGCCGTCGAAGAAGACACGAACCTCTTTCGTGCGTGGGTTACGCGGGCGATGGTGGAGCAGCGGCATCCAGTTCATCGAAGGGCTCGCACCGCTGCCGAAACTGTTCCGCTTGGGTGTCGAATTGTAATTCGAACCTAA

mRNA sequence

ATGTTGAAACCGTGTGGAAGTTCACATCTGAGTCCGCTGGAGCGTAGACTCGCCAGAAGAGAGGAAGAAGAAGCCACACAGGCTACCATTCAAGGCAAACGCTGGAATTCGCCGGAAATTGAAGTTACCGATGCTCGTGAGTGCGGATACTGTCGTAACGCCGTCGAAGAAGACACGAACCTCTTTCGTGCGTGGGTTACGCGGGCGATGGTGGAGCAGCGGCATCCAGTTCATCGAAGGGCTCGCACCGCTGCCGAAACTGTTCCGCTTGGGTGTCGAATTGTAATTCGAACCTAA

Coding sequence (CDS)

ATGTTGAAACCGTGTGGAAGTTCACATCTGAGTCCGCTGGAGCGTAGACTCGCCAGAAGAGAGGAAGAAGAAGCCACACAGGCTACCATTCAAGGCAAACGCTGGAATTCGCCGGAAATTGAAGTTACCGATGCTCGTGAGTGCGGATACTGTCGTAACGCCGTCGAAGAAGACACGAACCTCTTTCGTGCGTGGGTTACGCGGGCGATGGTGGAGCAGCGGCATCCAGTTCATCGAAGGGCTCGCACCGCTGCCGAAACTGTTCCGCTTGGGTGTCGAATTGTAATTCGAACCTAA

Protein sequence

MLKPCGSSHLSPLERRLARREEEEATQATIQGKRWNSPEIEVTDARECGYCRNAVEEDTNLFRAWVTRAMVEQRHPVHRRARTAAETVPLGCRIVIRT
Homology
[Close]
BLAST of CsaV3_4G029890 vs. NCBI nr
Match: KGN54740.1 (hypothetical protein Csa_4G439070 [Cucumis sativus])

HSP 1 Score: 201.8 bits (512), Expect = 1.1e-48
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0 

Query: 1  MLKPCGSSHLSPLERRLARREEEEATQATIQGKRWNSPEIEVTDARECGYCRNAVEEDTN 60
          MLKPCGSSHLSPLERRLARREEEEATQATIQGKRWNSPEIEVTDARECGYCRNAVEEDTN
Sbjct: 1  MLKPCGSSHLSPLERRLARREEEEATQATIQGKRWNSPEIEVTDARECGYCRNAVEEDTN 60

Query: 61 LFRAWVTRAMVEQRHPVHRRARTAAETVPLGCRIVIRT 99
          LFRAWVTRAMVEQRHPVHRRARTAAETVPLGCRIVIRT
Sbjct: 61 LFRAWVTRAMVEQRHPVHRRARTAAETVPLGCRIVIRT 98

[Close]
BLAST of CsaV3_4G029890 vs. TrEMBL
Match: tr|A0A0A0KYI6|A0A0A0KYI6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G439070 PE=4 SV=1)

HSP 1 Score: 201.8 bits (512), Expect = 7.0e-49
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0 

Query: 1  MLKPCGSSHLSPLERRLARREEEEATQATIQGKRWNSPEIEVTDARECGYCRNAVEEDTN 60
          MLKPCGSSHLSPLERRLARREEEEATQATIQGKRWNSPEIEVTDARECGYCRNAVEEDTN
Sbjct: 1  MLKPCGSSHLSPLERRLARREEEEATQATIQGKRWNSPEIEVTDARECGYCRNAVEEDTN 60

Query: 61 LFRAWVTRAMVEQRHPVHRRARTAAETVPLGCRIVIRT 99
          LFRAWVTRAMVEQRHPVHRRARTAAETVPLGCRIVIRT
Sbjct: 61 LFRAWVTRAMVEQRHPVHRRARTAAETVPLGCRIVIRT 98

The following BLAST results are available for this feature:
BLAST of CsaV3_4G029890 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN54740.11.1e-48100.00hypothetical protein Csa_4G439070 [Cucumis sativus][more]
BLAST of CsaV3_4G029890 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G029890 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G029890 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KYI6|A0A0A0KYI6_CUCSA7.0e-49100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G439070 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_4G029890.1CsaV3_4G029890.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_4G029890CSPI04G19520Wild cucumber (PI 183967)cpicucB212
CsaV3_4G029890CsGy4G018410Cucumber (Gy14) v2cgybcucB171
CsaV3_4G029890MELO3C003272Melon (DHL92) v3.5.1cucmeB329
CsaV3_4G029890MELO3C003272.2Melon (DHL92) v3.6.1cucmedB323
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_4G029890Cucurbita moschata (Rifu)cmocucB1007
CsaV3_4G029890Cucurbita pepo (Zucchini)cpecucB0077
CsaV3_4G029890Cucurbita pepo (Zucchini)cpecucB0078
CsaV3_4G029890Cucurbita pepo (Zucchini)cpecucB0603
CsaV3_4G029890Bottle gourd (USVL1VR-Ls)cuclsiB274
CsaV3_4G029890Watermelon (Charleston Gray)cucwcgB319
CsaV3_4G029890Watermelon (97103) v2cucwmbB308
CsaV3_4G029890Wax gourdcucwgoB398
CsaV3_4G029890Silver-seed gourdcarcucB0510
CsaV3_4G029890Silver-seed gourdcarcucB0551
CsaV3_4G029890Cucumber (Gy14) v1cgycucB271
CsaV3_4G029890Cucurbita maxima (Rimu)cmacucB0793
CsaV3_4G029890Cucurbita maxima (Rimu)cmacucB0798
CsaV3_4G029890Cucurbita maxima (Rimu)cmacucB1023
CsaV3_4G029890Cucurbita moschata (Rifu)cmocucB0784