MELO3C002923 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C002923
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Reticulon-like protein B2
Location	chr9 : 7767797 .. 7771565 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GGCGGTACTAAAAAATTATAGAAAAATAAAGGAGATGAAATTTAGGTGAGGAAAAGATATAGAAAATTAAAGAAAAGAAAGGTGGAAGGAAAGACTGGGCGTTATGGGTTTGACGAATCATACACTTTGATATTTGGCAATGCGTAGAGAGGGCGGACGATAATGAGTCAAATTGGGGGAAGGATCGAGGGTTTGAGAGACACACCAATGGCGAGTCGATCAATCAACTGCAAGACAGAGGTTGGCAAACCCTTTGTTGCTCTCACTTGCGGTTCTTTGGTTTATTATCATTGCGCCTTTCGAAATTCCAGTCTTCTCTCCCTTGTCGCTGATGTTTTCATCGTTCTCCTTTGCTCTCTCGCCATTCTCGGCCTTCTCTTCCGCCATATGAACGTCTCGTAAGCATTCCCTTATTTCCGCCACTTTTTTTTTTTTTTTACTAGATTGGAGAACTTCTTCCAGATTGTTTTAAATGCTTCGGATTTTATGTCAACGATCGTATTAGTCCAATGTTGTTGAAATTAGATACTCAATCTGTATGCAGATCCTTATTCTCGTAATTATCTTTAATTAACATAATCTGTAATCTAAAATTTAAATCATCTGTAGGGTTCCAGTAGATCCTCTTGAGTGGCAAATATCGCAGGATACTGCTAATAGTATGATTGCTTGGTTAGCCAATACAATTGGTGCGGCTGAGTCTGTTCTGAGGGTGGCAGCTACAGGGCATGACAAGAGGCTTTTTGTTAAGGTATTGTTCTTTGATTATCACATTAGTGGCCTCTTACACAGTTTTGGGTAGTCTTAAATTGGCTTCTTTCTTTGAGTTTTGGGTTATTATTTGTACTCGAATTGGTCCTTTTTTCTTCTGTTTTTTTAAACTTTTATTTTCTCTGTGAAACATAAATTCCTTCGTTTCAAATAATATATGAAATTACAAAAAGAGAGGTATCCTTTGTATCAAAGGAAATTACAAAAAGCGCTTACGTTGGCTATAGGAGCAGTAAGACACAATAGGTATCCAACAAGCTATCTGAGAATACACAACAAATAACAGCAAGATTAGAAAGATGTTAAGAAAAAAAACATCTTTTTCTCCTTCAGCCAAATGTATCATAGAAAGGACTTAATGAAATCGAGCCAAATAGCTTCCCTTTCTTTCTTGAATGGCGCAGATTCCAGTGATGATAAAGAGTCCCTTGGTAGAGCCATTAGTAATGATAAAGAGTCCAATTGAAAACAAAATTATGGTCTTCCAAAATCCCATTAGCAAGGAATTTAAAGTTCTCTATCTATGTTAACTCCCCTTGAAATTGAAAGATTATTGTATGTATGGAAAGTTCGAAGGTAAAATTTAATTACTAGCACCGCCCATGATTAAGCTTGCCGTCTTAATCCGCCTAAGGTTTTAAAAAATTGCAATCCAATTGTCTTGACAATCCCGTAAACTTTATTATAAATCTATTTCTTTCCTTACCCAGCTTTATGCTAAATTGAAGGCAGGATCCATATGTGTCACATTGGGAAAATATTGCAAATCCTATTCAAAATAAACTTGCAACCTCCTTTTCATGAACTTTTCCATTCTTTTCTTAAAAATTTAATTTGAAAATCTTGTGCCATTTCCAGATAATGACTTCTCATTTTTCTCCTCAAAATGACAGCAATCCATCGTTTTCTTATGTTGCCAGAAAAGCAGAATATTTAACATGTTTACCTAACGATTTGTACATTTCTCCAAACTCATTATAACCATGCTGTCCAGGGAGACATGCGTTACAGTACGTTATCTTCCTAAATCTTTTCTAAACTGACATTTTGGGACAAATGCTTCCCTAGCGCGTTCCTTGAAAAACATTTGTTCTTTGGGTTATACAACTGTATCCTTATACTTGAGTCTGAAACAAGCATTTTCCTTATCACTACCCTGACAAATTTATATAAACATGTCTAAGTGCCACATGATTTCAAACCTTTCTTACATCCCATGCATGGAGTCGAAAATGTGATATTGTAAAAATAAATAAATTGTATATCTAACAGATTTATTGCACACCCTAGGTATTTGTTCATCTAGATCAAATATCAAACATTGTGTAATTGGCATCAGCTTACATTGATACACGATGAGGTTTCAGCAGCACATATTATAGGTTAAATGGTACAAAATACTTATAAACTTTAGTGTATCTAATCATGTCCTTGACAATAGTAAATTTTCATTTTGACCTTTACACTTCGGAATTGTTCCAATAAATTCATTTGGAAATCCTCTCTTGGCATATGTGATGAGTTATTTTTGCTACTATTTATTAGGCCATATTTTGTTAGATTGGAGACCTTTATTATAGGGTGCTCCCTTCCCTTTTGAGCTTGGTTTTTTTGTATGTAGGGTTTATGGTTTAGTATTCTTTCATCTTTTTTTTCTCCCTCAACGAAGGATGATCCTTTATCAAAAAATAATAAAAAATAACAATGTACAAAACAGCTATGGTATAGATTGACAATGCAGACATGATGTCATTTACAACATTATTATGTAAATTGACTTGGCATCTGATATGTAAAATTTGATTTTGTGAATGATGTTTAAATGATGTCGATGATATCTTGCTATATTGAAATGAATAGTAACAACGATCTTATTAGTTTATATGGTTGAAATTGAGTTGTAACCAATTCTATATGTGCTTTTCAATATATACTATTCATTATTTCATTTTTACAACAAAAAGGGAGAAATGCTAAAATGAATATGTGGGAGGACCAAATGAATTCTACTTTCATTTCTCCCTATAAAGCACAAAAGGTCGAGGTTTAAAAAGGACATAAATAAAAATTATTTCAAATGTCAGAAGTACACATGATATACGTGACACCGTCCAGGAGATCTAAGTTGCTCTACCTGATAAGGCCTTTCAAAGAACCAACTCGTAAAAAGAATATGTGTATTGATCTGTCATCTTTTGCTTGTAAATTAAAAGTCAGGCAAATCTTTCTGTAGGTCGTTGTTTGCCTTTACGCCCTCTCGGTGCTTGGAAGATTGGTCTCAGGTGTTACAGTTGCCTATACTGGTATGTCTGGCCTTCCTAATTGTCTCTACTTTTTTTCTATCTTACAAGATAATAAATATGCATGATGTTTTGATAGGACATTTTTCTATGCTCTTCACTCGTCATGTGGTGAAGCATTGCAGTTGAATTTGTTTTACCAATCTGATTTGTCGCCTATTTGCAATTTTGCTAGACTTATTGTTATAATTTTAAAAGATTATGCTGAGTCTCATTTCTTTTTATATTAGGGATAGTTAA

mRNA sequence

GGCGGTACTAAAAAATTATAGAAAAATAAAGGAGATGAAATTTAGGTGAGGAAAAGATATAGAAAATTAAAGAAAAGAAAGGTGGAAGGAAAGACTGGGCGTTATGGGTTTGACGAATCATACACTTTGATATTTGGCAATGCGTAGAGAGGGCGGACGATAATGAGTCAAATTGGGGGAAGGATCGAGGGTTTGAGAGACACACCAATGGCGAGTCGATCAATCAACTGCAAGACAGAGGTTGGCAAACCCTTTGTTGCTCTCACTTGCGGTTCTTTGGTTTATTATCATTGCGCCTTTCGAAATTCCAGTCTTCTCTCCCTTGTCGCTGATGTTTTCATCGTTCTCCTTTGCTCTCTCGCCATTCTCGGCCTTCTCTTCCGCCATATGAACGTCTCGGTTCCAGTAGATCCTCTTGAGTGGCAAATATCGCAGGATACTGCTAATAGTATGATTGCTTGGTTAGCCAATACAATTGGTGCGGCTGAGTCTGTTCTGAGGGTGGCAGCTACAGGGCATGACAAGAGGCTTTTTGTTAAGGTCGTTGTTTGCCTTTACGCCCTCTCGGTGCTTGGAAGATTGGTCTCAGGTGTTACAGTTGCCTATACTGGTATGTCTGGCCTTCCTAATTGTCTCTACTTTTTTTCTATCTTACAAGATAATAAATATGCATGATGTTTTGATAGGACATTTTTCTATGCTCTTCACTCGTCATGTGGTGAAGCATTGCAGTTGAATTTGTTTTACCAATCTGATTTGTCGCCTATTTGCAATTTTGCTAGACTTATTGTTATAATTTTAAAAGATTATGCTGAGTCTCATTTCTTTTTATATTAGGGATAGTTAA

Coding sequence (CDS)

ATGAGTCAAATTGGGGGAAGGATCGAGGGTTTGAGAGACACACCAATGGCGAGTCGATCAATCAACTGCAAGACAGAGGTTGGCAAACCCTTTGTTGCTCTCACTTGCGGTTCTTTGGTTTATTATCATTGCGCCTTTCGAAATTCCAGTCTTCTCTCCCTTGTCGCTGATGTTTTCATCGTTCTCCTTTGCTCTCTCGCCATTCTCGGCCTTCTCTTCCGCCATATGAACGTCTCGGTTCCAGTAGATCCTCTTGAGTGGCAAATATCGCAGGATACTGCTAATAGTATGATTGCTTGGTTAGCCAATACAATTGGTGCGGCTGAGTCTGTTCTGAGGGTGGCAGCTACAGGGCATGACAAGAGGCTTTTTGTTAAGGTCGTTGTTTGCCTTTACGCCCTCTCGGTGCTTGGAAGATTGGTCTCAGGTGTTACAGTTGCCTATACTGGTATGTCTGGCCTTCCTAATTGTCTCTACTTTTTTTCTATCTTACAAGATAATAAATATGCATGA

Protein sequence

MSQIGGRIEGLRDTPMASRSINCKTEVGKPFVALTCGSLVYYHCAFRNSSLLSLVADVFIVLLCSLAILGLLFRHMNVSVPVDPLEWQISQDTANSMIAWLANTIGAAESVLRVAATGHDKRLFVKVVVCLYALSVLGRLVSGVTVAYTGMSGLPNCLYFFSILQDNKYA*

Homology

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BLAST of MELO3C002923 vs. Swiss-Prot
Match: RTNLT_ARATH (Reticulon-like protein B22 OS=Arabidopsis thaliana GN=RTNLB22 PE=2 SV=1)

HSP 1 Score: 199.1 bits (505), Expect = 4.1e-50
Identity = 98/125 (78.40%), Postives = 110/125 (88.00%), Query Frame = 1


Query: 26  EVGKPFVALTCGSLVYYHCAFRNSSLLSLVADVFIVLLCSLAILGLLFRHMNVSVPVDPL 85
           E+GK    L  G+LVYYHCA+RN++LLSL +DVFIVLLCSLAILGLLFR +NVSVPVDPL
Sbjct: 3   EMGKAMGLLISGTLVYYHCAYRNATLLSLFSDVFIVLLCSLAILGLLFRQLNVSVPVDPL 62

Query: 86  EWQISQDTANSMIAWLANTIGAAESVLRVAATGHDKRLFVKVVVCLYALSVLGRLVSGVT 145
           EWQISQDTA++++A LANT+GAAE VLRVAATGHDKRLFVKVV+CLY LS LGRL+SGVT
Sbjct: 63  EWQISQDTASNIVARLANTVGAAEGVLRVAATGHDKRLFVKVVICLYFLSALGRLISGVT 122

Query: 146 VAYTG 151
           VAY G
Sbjct: 123 VAYAG 127

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BLAST of MELO3C002923 vs. Swiss-Prot
Match: RTNLU_ARATH (Reticulon-like protein B23 OS=Arabidopsis thaliana GN=RTNLB23 PE=2 SV=1)

HSP 1 Score: 191.0 bits (484), Expect = 1.1e-47
Identity = 94/125 (75.20%), Postives = 109/125 (87.20%), Query Frame = 1


Query: 26  EVGKPFVALTCGSLVYYHCAFRNSSLLSLVADVFIVLLCSLAILGLLFRHMNVSVPVDPL 85
           E+GK    L  G+LVY+HCA RN++LLSL++DV IVLL SLAILGLLFRH+NVSVPVDPL
Sbjct: 3   EMGKAIGLLISGTLVYHHCANRNATLLSLISDVLIVLLSSLAILGLLFRHLNVSVPVDPL 62

Query: 86  EWQISQDTANSMIAWLANTIGAAESVLRVAATGHDKRLFVKVVVCLYALSVLGRLVSGVT 145
           EWQISQDTA +++A LANT+GAAESVLRVAATGHDKRLFVKVV+CLY L+ LGR++SGVT
Sbjct: 63  EWQISQDTACNIVARLANTVGAAESVLRVAATGHDKRLFVKVVICLYFLAALGRIISGVT 122

Query: 146 VAYTG 151
           +AY G
Sbjct: 123 IAYAG 127

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BLAST of MELO3C002923 vs. TrEMBL
Match: A0A0A0KQM7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G487710 PE=4 SV=1)

HSP 1 Score: 290.8 bits (743), Expect = 1.1e-75
Identity = 147/150 (98.00%), Postives = 148/150 (98.67%), Query Frame = 1


Query: 1   MSQIGGRIEGLRDTPMASRSINCKTEVGKPFVALTCGSLVYYHCAFRNSSLLSLVADVFI 60
           MSQIGGRIEGLRDT MASRSINCKTEVGKPFVAL CGSLVYYHCAFRNSSLLSLVADVFI
Sbjct: 2   MSQIGGRIEGLRDTQMASRSINCKTEVGKPFVALICGSLVYYHCAFRNSSLLSLVADVFI 61

Query: 61  VLLCSLAILGLLFRHMNVSVPVDPLEWQISQDTANSMIAWLANTIGAAESVLRVAATGHD 120
           VLLCSLAILGLLFRHMNVSVPVDPLEWQ+SQDTANSMIAWLANTIGAAESVLRVAATGHD
Sbjct: 62  VLLCSLAILGLLFRHMNVSVPVDPLEWQVSQDTANSMIAWLANTIGAAESVLRVAATGHD 121

Query: 121 KRLFVKVVVCLYALSVLGRLVSGVTVAYTG 151
           KRLFVKVVVCLYALSVLGRLVSGVTVAYTG
Sbjct: 122 KRLFVKVVVCLYALSVLGRLVSGVTVAYTG 151

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BLAST of MELO3C002923 vs. TrEMBL
Match: V4SPG4_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10032913mg PE=4 SV=1)

HSP 1 Score: 221.5 bits (563), Expect = 8.5e-55
Identity = 111/136 (81.62%), Postives = 122/136 (89.71%), Query Frame = 1


Query: 16  MASRSINC-KTEVGKPFVALTCGSLVYYHCAFRNSSLLSLVADVFIVLLCSLAILGLLFR 75
           M   SIN  ++EVGK    L CGSLVYYHCA+RNSSLLSL++DVFIVLLCSLAILGLLFR
Sbjct: 1   MGCSSINSSRSEVGKALGVLICGSLVYYHCAYRNSSLLSLISDVFIVLLCSLAILGLLFR 60

Query: 76  HMNVSVPVDPLEWQISQDTANSMIAWLANTIGAAESVLRVAATGHDKRLFVKVVVCLYAL 135
            MN+SVPVDPLEWQISQ+TANS++AWLANT+GAAESVLRVAATGHDKRLF KVVVCLY L
Sbjct: 61  QMNISVPVDPLEWQISQETANSIVAWLANTVGAAESVLRVAATGHDKRLFFKVVVCLYIL 120

Query: 136 SVLGRLVSGVTVAYTG 151
           SVLGR+VSGVTVAY G
Sbjct: 121 SVLGRMVSGVTVAYAG 136

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BLAST of MELO3C002923 vs. TrEMBL
Match: M5WR47_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012399mg PE=4 SV=1)

HSP 1 Score: 221.1 bits (562), Expect = 1.1e-54
Identity = 113/152 (74.34%), Postives = 127/152 (83.55%), Query Frame = 1


Query: 24  KTEVGKPFVALTCGSLVYYHCAFRNSSLLSLVADVFIVLLCSLAILGLLFRHMNVSVPVD 83
           ++EVGKP + L CGSLVYYHCA RNSSL+SLV+DV IVLLCSLAILGLLFR MN+SVPVD
Sbjct: 4   RSEVGKPVIVLICGSLVYYHCAHRNSSLVSLVSDVLIVLLCSLAILGLLFRQMNISVPVD 63

Query: 84  PLEWQISQDTANSMIAWLANTIGAAESVLRVAATGHDKRLFVKVVVCLYALSVLGRLVSG 143
           PLEWQISQDTANS++AWLANTIGAAESVLRVAATGHDKRLF KVV CLY LS LGRLVSG
Sbjct: 64  PLEWQISQDTANSIVAWLANTIGAAESVLRVAATGHDKRLFFKVVFCLYMLSALGRLVSG 123

Query: 144 VTVAYTGEEMNVLHIKMLSNLHWLLPCFSFFL 176
           +TVAY G  +  L++ +  N   +  C S FL
Sbjct: 124 LTVAYAGLCLFCLYM-LAENSQSISACLSRFL 154

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BLAST of MELO3C002923 vs. TrEMBL
Match: A0A067JYG2_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22580 PE=4 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 2.5e-54
Identity = 106/127 (83.46%), Postives = 117/127 (92.13%), Query Frame = 1


Query: 22  NCKTEVGKPFVALTCGSLVYYHCAFRNSSLLSLVADVFIVLLCSLAILGLLFRHMNVSVP 81
           N ++E+GKP + L CGSLVYYHCA+RN+SLLSLV+DV IVLLCSLAILGLLFR MN+SVP
Sbjct: 6   NKRSEIGKPMIGLICGSLVYYHCAYRNASLLSLVSDVLIVLLCSLAILGLLFRQMNISVP 65

Query: 82  VDPLEWQISQDTANSMIAWLANTIGAAESVLRVAATGHDKRLFVKVVVCLYALSVLGRLV 141
           VDPLEWQISQDTANS++AW ANTIGAAESVLRVAATGHDKRLF KVV+CLY LSVLGRLV
Sbjct: 66  VDPLEWQISQDTANSIVAWFANTIGAAESVLRVAATGHDKRLFFKVVICLYVLSVLGRLV 125

Query: 142 SGVTVAY 149
           SG TVAY
Sbjct: 126 SGFTVAY 132

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BLAST of MELO3C002923 vs. TrEMBL
Match: F6GYL8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_09s0054g00800 PE=4 SV=1)

HSP 1 Score: 216.1 bits (549), Expect = 3.6e-53
Identity = 106/158 (67.09%), Postives = 131/158 (82.91%), Query Frame = 1


Query: 18  SRSINCKTEVGKPFVALTCGSLVYYHCAFRNSSLLSLVADVFIVLLCSLAILGLLFRHMN 77
           +R ++ + E+GKP + + CG+L+YYHCA+RNS+LL+LV+DV IVLLCSLAILGLLFR +N
Sbjct: 25  NREMDYRAEIGKPVIVMICGTLIYYHCAYRNSTLLTLVSDVLIVLLCSLAILGLLFRQIN 84

Query: 78  VSVPVDPLEWQISQDTANSMIAWLANTIGAAESVLRVAATGHDKRLFVKVVVCLYALSVL 137
           +SVPVDPLEWQISQDTAN+++A +ANTIGAAESVLRVAATGHDKRLFVKVVVCLY LS L
Sbjct: 85  ISVPVDPLEWQISQDTANNIVACMANTIGAAESVLRVAATGHDKRLFVKVVVCLYVLSAL 144

Query: 138 GRLVSGVTVAYTGEEMNVLHIKMLSNLHWLLPCFSFFL 176
           GR+VSGVTVAY G  +  L++    N   +  C S F+
Sbjct: 145 GRVVSGVTVAYAGLWLFCLYM-FAENSQTICACMSRFM 181

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BLAST of MELO3C002923 vs. TAIR10
Match: AT1G78895.1 (AT1G78895.1 Reticulon family protein)

HSP 1 Score: 199.1 bits (505), Expect = 2.3e-51
Identity = 98/125 (78.40%), Postives = 110/125 (88.00%), Query Frame = 1


Query: 26  EVGKPFVALTCGSLVYYHCAFRNSSLLSLVADVFIVLLCSLAILGLLFRHMNVSVPVDPL 85
           E+GK    L  G+LVYYHCA+RN++LLSL +DVFIVLLCSLAILGLLFR +NVSVPVDPL
Sbjct: 3   EMGKAMGLLISGTLVYYHCAYRNATLLSLFSDVFIVLLCSLAILGLLFRQLNVSVPVDPL 62

Query: 86  EWQISQDTANSMIAWLANTIGAAESVLRVAATGHDKRLFVKVVVCLYALSVLGRLVSGVT 145
           EWQISQDTA++++A LANT+GAAE VLRVAATGHDKRLFVKVV+CLY LS LGRL+SGVT
Sbjct: 63  EWQISQDTASNIVARLANTVGAAEGVLRVAATGHDKRLFVKVVICLYFLSALGRLISGVT 122

Query: 146 VAYTG 151
           VAY G
Sbjct: 123 VAYAG 127

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BLAST of MELO3C002923 vs. TAIR10
Match: AT1G16825.1 (AT1G16825.1 Reticulon family protein)

HSP 1 Score: 191.0 bits (484), Expect = 6.2e-49
Identity = 94/125 (75.20%), Postives = 109/125 (87.20%), Query Frame = 1


Query: 26  EVGKPFVALTCGSLVYYHCAFRNSSLLSLVADVFIVLLCSLAILGLLFRHMNVSVPVDPL 85
           E+GK    L  G+LVY+HCA RN++LLSL++DV IVLL SLAILGLLFRH+NVSVPVDPL
Sbjct: 3   EMGKAIGLLISGTLVYHHCANRNATLLSLISDVLIVLLSSLAILGLLFRHLNVSVPVDPL 62

Query: 86  EWQISQDTANSMIAWLANTIGAAESVLRVAATGHDKRLFVKVVVCLYALSVLGRLVSGVT 145
           EWQISQDTA +++A LANT+GAAESVLRVAATGHDKRLFVKVV+CLY L+ LGR++SGVT
Sbjct: 63  EWQISQDTACNIVARLANTVGAAESVLRVAATGHDKRLFVKVVICLYFLAALGRIISGVT 122

Query: 146 VAYTG 151
           +AY G
Sbjct: 123 IAYAG 127

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BLAST of MELO3C002923 vs. NCBI nr
Match: gi|659131469|ref|XP_008465702.1| (PREDICTED: reticulon-like protein B23 isoform X1 [Cucumis melo])

HSP 1 Score: 345.9 bits (886), Expect = 4.3e-92
Identity = 173/173 (100.00%), Postives = 173/173 (100.00%), Query Frame = 1


Query: 1   MSQIGGRIEGLRDTPMASRSINCKTEVGKPFVALTCGSLVYYHCAFRNSSLLSLVADVFI 60
           MSQIGGRIEGLRDTPMASRSINCKTEVGKPFVALTCGSLVYYHCAFRNSSLLSLVADVFI
Sbjct: 1   MSQIGGRIEGLRDTPMASRSINCKTEVGKPFVALTCGSLVYYHCAFRNSSLLSLVADVFI 60

Query: 61  VLLCSLAILGLLFRHMNVSVPVDPLEWQISQDTANSMIAWLANTIGAAESVLRVAATGHD 120
           VLLCSLAILGLLFRHMNVSVPVDPLEWQISQDTANSMIAWLANTIGAAESVLRVAATGHD
Sbjct: 61  VLLCSLAILGLLFRHMNVSVPVDPLEWQISQDTANSMIAWLANTIGAAESVLRVAATGHD 120

Query: 121 KRLFVKVVVCLYALSVLGRLVSGVTVAYTGEEMNVLHIKMLSNLHWLLPCFSF 174
           KRLFVKVVVCLYALSVLGRLVSGVTVAYTGEEMNVLHIKMLSNLHWLLPCFSF
Sbjct: 121 KRLFVKVVVCLYALSVLGRLVSGVTVAYTGEEMNVLHIKMLSNLHWLLPCFSF 173

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BLAST of MELO3C002923 vs. NCBI nr
Match: gi|778703023|ref|XP_011655302.1| (PREDICTED: reticulon-like protein B23 isoform X1 [Cucumis sativus])

HSP 1 Score: 340.5 bits (872), Expect = 1.8e-90
Identity = 172/178 (96.63%), Postives = 174/178 (97.75%), Query Frame = 1


Query: 1   MSQIGGRIEGLRDTPMASRSINCKTEVGKPFVALTCGSLVYYHCAFRNSSLLSLVADVFI 60
           MSQIGGRIEGLRDT MASRSINCKTEVGKPFVAL CGSLVYYHCAFRNSSLLSLVADVFI
Sbjct: 2   MSQIGGRIEGLRDTQMASRSINCKTEVGKPFVALICGSLVYYHCAFRNSSLLSLVADVFI 61

Query: 61  VLLCSLAILGLLFRHMNVSVPVDPLEWQISQDTANSMIAWLANTIGAAESVLRVAATGHD 120
           VLLCSLAILGLLFRHMNVSVPVDPLEWQ+SQDTANSMIAWLANTIGAAESVLRVAATGHD
Sbjct: 62  VLLCSLAILGLLFRHMNVSVPVDPLEWQVSQDTANSMIAWLANTIGAAESVLRVAATGHD 121

Query: 121 KRLFVKVVVCLYALSVLGRLVSGVTVAYTGEEMNVLHIKMLSNLHWLLPCFSFFLLFF 179
           KRLFVKVVVCLYALSVLGRLVSGVTVAYTGEEMNVLHIKM+SNLHWLLPCFSF  LFF
Sbjct: 122 KRLFVKVVVCLYALSVLGRLVSGVTVAYTGEEMNVLHIKMISNLHWLLPCFSF--LFF 177

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BLAST of MELO3C002923 vs. NCBI nr
Match: gi|659131471|ref|XP_008465703.1| (PREDICTED: reticulon-like protein B22 isoform X2 [Cucumis melo])

HSP 1 Score: 297.4 bits (760), Expect = 1.8e-77
Identity = 156/175 (89.14%), Postives = 161/175 (92.00%), Query Frame = 1


Query: 1   MSQIGGRIEGLRDTPMASRSINCKTEVGKPFVALTCGSLVYYHCAFRNSSLLSLVADVFI 60
           MSQIGGRIEGLRDTPMASRSINCKTEVGKPFVALTCGSLVYYHCAFRNSSLLSLVADVFI
Sbjct: 1   MSQIGGRIEGLRDTPMASRSINCKTEVGKPFVALTCGSLVYYHCAFRNSSLLSLVADVFI 60

Query: 61  VLLCSLAILGLLFRHMNVSVPVDPLEWQISQDTANSMIAWLANTIGAAESVLRVAATGHD 120
           VLLCSLAILGLLFRHMNVSVPVDPLEWQISQDTANSMIAWLANTIGAAESVLRVAATGHD
Sbjct: 61  VLLCSLAILGLLFRHMNVSVPVDPLEWQISQDTANSMIAWLANTIGAAESVLRVAATGHD 120

Query: 121 KRLFVKVVVCLYALSVLGRLVSGVTVAYTGEEMNVLHIKMLSNLHWLLPCFSFFL 176
           KRLFVKVVVCLYALSVLGRLVSGVTVAYTG  M  +++ +L N   +    S FL
Sbjct: 121 KRLFVKVVVCLYALSVLGRLVSGVTVAYTGLCMLCIYM-VLENSESISAAISPFL 174

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BLAST of MELO3C002923 vs. NCBI nr
Match: gi|778703026|ref|XP_011655303.1| (PREDICTED: reticulon-like protein B22 isoform X2 [Cucumis sativus])

HSP 1 Score: 290.8 bits (743), Expect = 1.6e-75
Identity = 147/150 (98.00%), Postives = 148/150 (98.67%), Query Frame = 1


Query: 1   MSQIGGRIEGLRDTPMASRSINCKTEVGKPFVALTCGSLVYYHCAFRNSSLLSLVADVFI 60
           MSQIGGRIEGLRDT MASRSINCKTEVGKPFVAL CGSLVYYHCAFRNSSLLSLVADVFI
Sbjct: 2   MSQIGGRIEGLRDTQMASRSINCKTEVGKPFVALICGSLVYYHCAFRNSSLLSLVADVFI 61

Query: 61  VLLCSLAILGLLFRHMNVSVPVDPLEWQISQDTANSMIAWLANTIGAAESVLRVAATGHD 120
           VLLCSLAILGLLFRHMNVSVPVDPLEWQ+SQDTANSMIAWLANTIGAAESVLRVAATGHD
Sbjct: 62  VLLCSLAILGLLFRHMNVSVPVDPLEWQVSQDTANSMIAWLANTIGAAESVLRVAATGHD 121

Query: 121 KRLFVKVVVCLYALSVLGRLVSGVTVAYTG 151
           KRLFVKVVVCLYALSVLGRLVSGVTVAYTG
Sbjct: 122 KRLFVKVVVCLYALSVLGRLVSGVTVAYTG 151

[Close]

BLAST of MELO3C002923 vs. NCBI nr
Match: gi|694409144|ref|XP_009379216.1| (PREDICTED: reticulon-like protein B22 [Pyrus x bretschneideri])

HSP 1 Score: 226.1 bits (575), Expect = 5.0e-56
Identity = 114/157 (72.61%), Postives = 133/157 (84.71%), Query Frame = 1


Query: 19  RSINCKTEVGKPFVALTCGSLVYYHCAFRNSSLLSLVADVFIVLLCSLAILGLLFRHMNV 78
           ++++ ++EVGKP V L CGSLVYYHCA RNSSLLSL++DV IVLLCSLAILGLLFR MNV
Sbjct: 2   KNVDFRSEVGKPVVVLICGSLVYYHCAHRNSSLLSLLSDVLIVLLCSLAILGLLFRQMNV 61

Query: 79  SVPVDPLEWQISQDTANSMIAWLANTIGAAESVLRVAATGHDKRLFVKVVVCLYALSVLG 138
           SVPVDPLEWQISQDTANS++AWLANT+GAAESVLRVAATGHDKRLFVKVV+CLY LS LG
Sbjct: 62  SVPVDPLEWQISQDTANSIVAWLANTVGAAESVLRVAATGHDKRLFVKVVICLYMLSALG 121

Query: 139 RLVSGVTVAYTGEEMNVLHIKMLSNLHWLLPCFSFFL 176
           RL+SG+TVAY G  +  L++ +  N   +  C S FL
Sbjct: 122 RLISGLTVAYVGLCLFCLYM-VAENSESISACLSRFL 157

The following BLAST results are available for this feature:

BLAST of MELO3C002923 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RTNLT_ARATH	4.1e-50	78.40	Reticulon-like protein B22 OS=Arabidopsis thaliana GN=RTNLB22 PE=2 SV=1	[more]
RTNLU_ARATH	1.1e-47	75.20	Reticulon-like protein B23 OS=Arabidopsis thaliana GN=RTNLB23 PE=2 SV=1	[more]

BLAST of MELO3C002923 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KQM7_CUCSA	1.1e-75	98.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G487710 PE=4 SV=1	[more]
V4SPG4_9ROSI	8.5e-55	81.62	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10032913mg PE=4 SV=1	[more]
M5WR47_PRUPE	1.1e-54	74.34	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012399mg PE=4 SV=1	[more]
A0A067JYG2_JATCU	2.5e-54	83.46	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22580 PE=4 SV=1	[more]
F6GYL8_VITVI	3.6e-53	67.09	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_09s0054g00800 PE=4 SV=...	[more]

BLAST of MELO3C002923 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G78895.1	2.3e-51	78.40	Reticulon family protein	[more]
AT1G16825.1	6.2e-49	75.20	Reticulon family protein	[more]

BLAST of MELO3C002923 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659131469\|ref\|XP_008465702.1\|	4.3e-92	100.00	PREDICTED: reticulon-like protein B23 isoform X1 [Cucumis melo]	[more]
gi\|778703023\|ref\|XP_011655302.1\|	1.8e-90	96.63	PREDICTED: reticulon-like protein B23 isoform X1 [Cucumis sativus]	[more]
gi\|659131471\|ref\|XP_008465703.1\|	1.8e-77	89.14	PREDICTED: reticulon-like protein B22 isoform X2 [Cucumis melo]	[more]
gi\|778703026\|ref\|XP_011655303.1\|	1.6e-75	98.00	PREDICTED: reticulon-like protein B22 isoform X2 [Cucumis sativus]	[more]
gi\|694409144\|ref\|XP_009379216.1\|	5.0e-56	72.61	PREDICTED: reticulon-like protein B22 [Pyrus x bretschneideri]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR003388	Reticulon
IPR003388	Reticulon
IPR003388	Reticulon

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
MU47875	melon EST collection version 4.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C002923T3	MELO3C002923T3	mRNA
MELO3C002923T2	MELO3C002923T2	mRNA
MELO3C002923T1	MELO3C002923T1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
MU47875	MU47875	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003388	Reticulon	PFAM	PF02453	Reticulon	coord: 32..152 score: 1.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C002923	Csa5G487710	Cucumber (Chinese Long) v2	cumeB361
MELO3C002923	Cla003257	Watermelon (97103) v1	mewmB003
MELO3C002923	ClCG09G020780	Watermelon (Charleston Gray)	mewcgB002
MELO3C002923	Cla97C09G182200	Watermelon (97103) v2	mewmbB038
MELO3C002923	Bhi06G000661	Wax gourd	mewgoB023
MELO3C002923	CSPI05G16540	Wild cucumber (PI 183967)	cpimeB350
MELO3C002923	Cucsa.275360	Cucumber (Gy14) v1	cgymeB460
MELO3C002923	CmoCh12G006610	Cucurbita moschata (Rifu)	cmomeB135
MELO3C002923	Lsi02G017380	Bottle gourd (USVL1VR-Ls)	lsimeB162
MELO3C002923	Cp4.1LG07g05390	Cucurbita pepo (Zucchini)	cpemeB741
MELO3C002923	CsGy5G016370	Cucumber (Gy14) v2	cgybmeB300
MELO3C002923	CsaV3_5G025600	Cucumber (Chinese Long) v3	cucmeB359

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C002923	Cucurbita pepo (Zucchini)	cpemeB078
MELO3C002923	Silver-seed gourd	carmeB1030
MELO3C002923	Cucurbita maxima (Rimu)	cmameB716
MELO3C002923	Cucurbita moschata (Rifu)	cmomeB705