CmoCh12G006610 (gene) Cucurbita moschata (Rifu)

NameCmoCh12G006610
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionReticulon-like protein B2
LocationCmo_Chr12 : 4329343 .. 4338357 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AATTCACTGAGGGTTGACGATGAACCAAATTGAGGGGAGGAGCGAGAGCTTGAAGGACGCAGAAATGGCGAATCGCTCCATCAGCTGCAAGACAGAAGTAGGCAAACCCCTTGTAGCTCTGATTTGCGGTTCATTGGTTTATTACCATTGCGCTTATCGAAATTCCAGTCTCCTCTCCCTCGTCGCGGATGTTTTCATCGTTCTCCTTTGCTCTCTCGCCATTCTCGGCCTTCTCTTCCGCCATATGAATGTCTCGTAAGCATACTCCTGTTTTTCTCTATGCTTGTAGGGTATTTTCTTGATTGGAGAATTCAATGTCAGCGGAAATATTAGTCGGTTTCAATTTTTATGGATTTCTTTTAAGGAATGTTGTTGAACTTAGATCCTCCATCTTTATGCGTATCTTTATCGTCGTTGTGATCTTGAACTCTAGCCTGTAAGCCAAAATTCAATTGATTTTCAGTGTACCTGTGGATCCACTTGAGTGGCAAATTTCGCAGGATACTGCTAATAGTATGATAGCTTGGTTAGCCAATACCATAGGTGCGGCTGAGTCTGTACTGAGAGTCGCAGCAACAGGGCATGACAAGAGGCTTTTTGTGAAGGTATTCCTCTTCTCCTCAATTTGTACGTTAGCACGCTTCTACTCGGTCTTGCTCTCGTTAACTTGTACGTTAGTCCGTTTCTTCACAGTTTTGGTAAATAATAACTAGACTTCCTTTCACTGAGTTTTAGGTTGTCGTATGTATTGGAATAGGAGCATCTGAAATTGCATACTAGCAAGAAATTCATTTGTTTTTAAAATCCAATATGCCTAGGACTTTTGAACGTCTTCAGAGTAAATTATACCATAGTCAGACTTGTGGCACCCGAAAGTATTTTGGCAACTTAACATTGGGTGAACCTTTACATGAATTAAGTTAGTACCTGCATAGGAACCTTAAACCCTTTGTGCATGGCAGACTAAGAAGCATATACATGGATATGCAATACAAAAGCATATATTTAACTATACGTTTGCTTGGATCTGTTAAAGTGCTATCAGAGCTTTGCTTTTGGGCATGTCATGGGTGAGGAAAATGGATAGTTGAATTGTTGCAATGAACACAAAAAGGTTTGGATCCCCCCTCCCCCCCCCCCCAAAAAAAAATGAAGTTCTTTGGTTGGCAGGTGTTGCGTGGGATGGTGAACACCCTATATTCTATCCATGTATTTCATCCACAATTGTGTATTCTTTACTTGAGGTAGGAGGAGAACATCAATAATTTGTTTTGGGGTTACCAATTTGCTTATTCCCTTTGGAGCTAGTGCCTAAGTTCTTTTGGTCGTCACTTAGCTCGAAGTAGAGGCTGGATCTATAATCAAGGAGATCCTCCCGAATTCTCCCTTTCGCGGTAAAGGCAAAATTCTGTGGTAGACATGTTTTGTTGCAACTTTGTGGGGATTTGGCTAGAAAAGCACATCAAANGGGGGGGGGGGGGGGGGGGGGGGGTAGGCGGTTGTTAGGTTAAATTCTCCTTATGGGCACCTGTCCATCCGGTTATTTGTATTATAATTTTAGTTTTATTATCTTGGATTGGAATTCCTTCCTACAATTAGTTGTGAGTTTCTTTTCGTGGGCTTGATTTTTGTATAATCTTGTACATTCTTTCATTTTACACGATGAATGTTTGACTTCTTACAAATAAAAGAATTGTAGAAACGAATATGCAAATGGGAACCATGTTCGGGGAGTTGAAGAAACTGTTAAATGGAGAAGAACATTGTAGCACTTTTAGATGGAATGAGTGTCGTTAATGCACATGGAGTATATGGAGAGGATACCCAACAAGGCCACGGATAGTAGACATTGCAAAGGGGAAACAACTAATTGAACTAGTTGGAAAGTGTGAAAAGGGAATTGAGTGAGCTGAGTTGAGTGCCAATTAAAGTTAGAGAAGTTATGGTGTTGGAGATCAAATATCTATGTTGGAGGAGGTGTGTTTTGCATTCTTCCTTTACAGATAAAGACAAAGTGTTGTGACAGGTTAGTTCCTTTGCAGGGTTTTTGAGTATTTGGTTTGAGAAGAACAATAAGTTTCTTAGAAATAAAGAGAAGTTGGATGAGGAGGTTTGGGAGATTGTTATGTTCAATTCCTTCTTTTGGGTGTTTGCCATGAGGTCGTTTTGTATGACCTTGGTCTTGTTCTTTTGGCTTGAAGTCCCTTTTGTAATTAGTTTTGGGCTTGTATTCTTTCATTTTCTCCATGAAAGCTTGGTTTCTTATCCCCCCCCCGAAAAAAAAAAGGGTTGGAAGGAAACAATCTTGATGGTTAGATATTTCTCATAGAGTGGTGTTTATTCAGATAAGTGAATGGAAAAAAGAAATAATAATTCTGAGTATGACCCAATGTTTTAAAGGCTCAAGGCGCACTAAGGTGCTATGGCCTTCTGGGGCTTAGGCGCAAGGCTCAAGGCACACTATATATAAAAAATAAGGTATATATACACACAATTAAAAAAAAAAAAAAAAAAAAAATCCTTCATGGGAAGGAATGAAGTTTCAACCCAATAAATAAGGTTAAAGTATTAGTCTTTGAACATAGAGTCAAATAAAAAAAAAAATCCTTCATGGGAAGGAATGAAGTTTCAACCCAATAAATAAGGTTAAAGTATTAGTCTTTGAACATAGAGTCAAATAAAAAAAAAAATCCTTCATGGGAAGGAATGAAGTTTCAACCCAATAAATAAGGTTAAAGTATTAGTCTTTGAACATAGAGTCAAATATTCTTGGTCATATATGCTTTAATTTCTTCCGACGTTTTCTACATGCCGTTGCATTTCTATAGCCACCAACATGTTGTTTCATTCTATAAACCCCTCCTTTTGTTACATTTGATCAAAAGCCACAAACTAATGCATTTATATTTTCAACATTATTCAAACGAGCATATTTCCATCCAGATCTTTTCTTAGACTATCCTCAGCCATCTAACAAGTTACCAATAACCAACCTGGTCGATCAAATTAATTATCTCATATTAGAATCTTAGACTAACTAACTCTAACTTAAGAAAATAACAATAGTTAGAGAGAAAACGATACTAATTAAAAACTGAGAGTGAGATGGAGAGAGGGGAATCAAGTTAGGAGTGAAATAGAGAGCAAGAAGCATCCGATCTAGAAAAAGAGAGAGGAGAACAAAGGCCGAGAGAGAGCTGGCAGAAAGATAGAGAGAGAAGAAGAAGAAACTAGACAGAGAGGGAAAACATAGCGATGACAAACAGTGTTTACAGCAACGACAAGGAATTGGCAAGCGGTTGTGTGGTTTCGAGGCGACGTCGATTTGAAGAAGGGGGAGAAATGAAATAATTATAATAAACGTAAAATCCTAAATACAAAAGCCTTTGTGTTTAGGGTTTTAATAAATTTTTGAATAACAACTAACCTATATGTACTGTTTTACTTAAAAATTAAAAAAATAATTCAATAAGCCCTGGATGTGTGTTGAGCGTCTTAGGGGTTTCATGGAAGGCGCGTGCCTTGGTTGTGCCTTCCTACCGGCTCCTTGATTTTTTGAGGCAAGGCGCTTCACATGCAACTTGTGCCTTTTGAAACTAGTATGACCAATGATGCACCAGCCTAGTTTCATGGGATGAAGTTCAATTCTTTCGTGGATGGACTTGAAAAAACTCTTATAGCTCAATTTTGAGCCACATGATGTGCTATATGACCAATTCTTCACTTTGAACCAGGAAGGAACAAAGAATTAATTATGGCAACAATTTGAAATTCTCGCCAACCCTCTACTGAACTTAATAGAGTTAGTACTAAAGGGATCAATAATGACAGGGAATATGCTTGAGAATAAGGAAGAGATGAGAGTGGTAATACCAGTGGACCTAGAAGCTATTGATGAAGGTAGACTAGTTTGTGGATGACTAATATGAACTCCATTGTTTACGGAAGGGGTTGAAAGAGACTACATTATCTGCATCTTTATTAATTTATTAGAACTTGTAGGCATCTTTTTAAATTCTTGGTATTTTCCAAATGGCCAAGATTCATCTCCGATACAGTACAAATAGTATCCGATTCTCTTTTCATGTATTTTGATTTTTCCTCTTTTCATATTAGATTTCTTCATTTCCCCCTACGTGCCACCAGCATTGAAGAATGTTCTTGTAACCTAACTCTCCCACCTATGTGCATTATATATATTGATCTGGTTCATTTCTCTTTTTTTCCCCATTGAATTTTGTCAACGGAATTTGCATAACACAAATCTTTCCTATGGGCCAAAGTACTAGATTCTAACAAATTCTTGGACAGGGCTACCTGCCGCACAAATCATTATTGCTTGGTGGAAATTCAAGGTGTCAAGAATTTTGGAAGCTGGTCTTGTCTCTTGGAAAAAAATTTCTTTTCTAAAGGTGTTATGCTTACCCCAGACGGTCTTGAGTGGGATTCCCTGTTATTTCTTTTCGATCTTTAAGATTCACTCTTTGGTTAGAGAGAGACTTGTGAGAGTGATGAGGATTTTTTTTTGTGAGAAGGGGGTTAAGGAGGAGCTGGGTGGGTCTCATCTTGTCAGTTGGGAGGCGATGGTTAAGCCTATGGAGTTAGGAGGGCTTGGAATATGGGATTTGAGGTTAAGTAATGAGACTCTCCTGTCTAATGGTTGTGCGATTCTTAATGTAGTCGGACACTTCGTGCCATGAAATTGGACACTTTGTGGCAGTTATCCTTAGCAGATATGGCCCAGACCCTTTTGAGTGGGTTGTAGTGGTGGTACCAATAGGCCTTCTAAACATCTCTCGTTAGCTATTGCCTTTGGTCTTCCTTTCTTTTCTCTTGTTAGGTGTTCGATTGGTGATGACTTGACTGTATATTTTTGGTTGGTTGCATTGTCTAGCCTCTGATCCATCCTCATCTTTGTCTTTAAGGTTTCAGCTTTCTCAATTTGATAGGGAGGCGTTAAAGGTAGTGATCCTTCTTTCTATTCTTTGTGATCAGCATGTGGATCAAGGGAGAAGGGGCATTAGATTTTGGTTCCTTGCTATTTTGAGGGGCTTCGCTTATAGCTCATTTTTTCATTTGTTGTCTATCCCTTCCTCGCCCCATCTTGTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTTTTTTTTTTTTTGTTTTTTTTTGTTGTGTGGCTTGTTTTACATGGGGAAGTGAATACTTTGGACAGCGTTTTGAGTGCCTCCCCCTTGGTGTTGTTCGTGCAGTGGTGCATTCTCTGCAGGCACCAGCCGGGTGATCTCTTTCATTTGTTGTCCAGTTTACCTTGTCTCTTTGGGATCGTTGGTTTACTTTGTTTGGTTTATGTTTGGCTTGGAATAGAGATTGTTTGACTTTGGTGGAGGAAGTGCTTCTAGGATCGTCTTTCTGTGATAAGGGAAAAGTTTTATGGCACTCTAGTTCTTCGCTATTTTTCGGGGCATTTAGCTTGAGAAAAATAATAGGATGAGAGAGGTTGAGAGGTATTGTGATGCGGTTTGGGAGGTGGTGAAGTTTCCTGCATCGTTGTAGCATCGTTTACTAGCCCTTTTTGTAATTATGATCTTGGTTTGATTTTTTTTTTTTTTTCTGGATTAGAGGCCATTTCTGTAAGCTTGGACTCCCCTTTGTTGGTGGGGTTGTTTTTTTTCAGTTTAATCTTCTTTTTAACTTCTGACAGAGCAGTTAATCAAGTTTATAGTTTCTGAAGCACGTTAGATGCAACTCCTAAGGCTTCGAAAATCTGATTTTTTTCCTGAACCACTGAAATCTTAAATGGGCTGTTTTTCCTCTCAAATCTTTGTCACTCCAATATAACAGAGAATAACATTCTGTTTTCCAGCCAACCTATTCATATAATCCTTGGCAGATGGAATAAGCCTACCTATCCCATCACAATCCACCAATAAGGCCTAAGCAATTGCAAACCAGTCATCATTCCAATCTCTTCTAGTAATGACAAAAGTGCAATCCTGTCAATTTTCCCAAAATCTATTTCTTTTCGTACCCAAAATTCCTTTTGCAACCTCTGCTTTACACAAAAGAAGGAAGGCATCAAATATGTCATTTTGAAAATATTACAAATCCTCTCCAAAACAAGCTTGGTGCTTCCTTTTCATGAACTTTCCCCTCTTTTCTTCAATAATCTCCCAAAAAGAAGACCCCTCATTTGTTTTTTTTCCAAAAGGGATAACAATTCTTCTTTTTCTAGGTCTTTAACTAACTCACTGTCCATGGAGATTGAAGAAGCTCCACCAGAGACATTTCTAATTAAAACCTAGTTCCAGCTTAGTCTAATGTAAAAAAAGTAGAGATTCCTTCTCTCCGGCTAAAAAACAGAACCGCAAATTGCAGGGAACACCCCAATTGAAAGCTATATCTTAATTGCAAGCTATAATTTTGATCTTTTGCACATAATTACCTACTTTGCTTCACTGCATGACTTAGTCTCATCTACTTTTAATGATCCTCTGCATCGATGGTATTTTTGCATATTAGACTAATAACTACTCTGAATATTGGATCTATGACCAAAATGCATACTTGTTTCTTTTATCATTCAGATGATTGTCAATTACAACTTTTTTTTTTTTTTTAACTAATACCAATTAGAGGGTCTTTTTTATGTAATCACGTTAGGATGAGTTTGGGTTACAATTTTGTGTCTAATAGGTCTTTGACCTGTCTGATATTTTTTTTTAAATACATGAAAGTTTTGTCTACAAAAATAAAAGTTACAGTCTTATTAGACACAAAATCCAATTTTATGTCTAATAAATCTATTAATTTTTTAAAAGGTTGGATATGTCACATGCCTATTAGACACAATATTGAAAGTTAAGAACCTACTAAACACAAAATTGAAATTTCAAGAATTTATTAAACGCAAACTTGAAGATTTATGAACTTATAATTTAACCTTACTTTTATAATACAACATCTCTAGTGTGGATTATAAGAGAAGTTTGAATTTTACGTGCAATCAAACATGTTATATGAATTTGTCTAGGTTCACTAGATCCAGCATGAAAGCGCTAGCATACAAAGCTTTTTTTCATTAGAAACAAGGAAAATGTTTATTCCAAAATGTCCAGGTAAAGAAAAGGATTTAGGAAAACAATATACTCGAGATGCTTGTCCATTTAGAGAGTTGAGAAGATAATGAAAATCAAGTAATAAGTATTGTTTTTCATTGACAAACGAAGATGTTCCATCATAATCTATTTTGTTTCCATGGTATATTTACCGGTTTATATTTGACTTTGTTTGTGAGTGAAGTTGCTCTTCCTACTAAGATCTTTCCGAACCATCTTCTTAAAAGAAATAGCTGTATTCATCTCTCATTTTGTGATGGATATTGTAAACTAAAATTGCGTAAATCTTTCTCCAGGTCATTGTCAGTCTTTACGCTCTCTCAGTCCTTGGAAGACTGGTTTCAGGTGTTACGGTTGCCTACACTGGTATGTTTCCTACTACAACTTGCCCCAATTTCTGCTATCCTATGAGAAGAAATATTTCTTGACAATTTGATATGAATTTTTGGTTTAGATACTATTTTAGTACATATACTTTGTTAGTTTGCTTTGGTCCCTATTCATTTAGAATGTTCATTTTGGTCCATGTACTTTTAACTTTTGTTCATTTATTCCTTGTTCTTTCCAAAAGTCTGTTTTGGTCCTTATATTTTTAAAATGTAACCATTTTTATCCTGGTTAGCAAAATTCTCACACAAATTAAACTATTCAGCACAAAACTGTGACACAATTCAACTAATTTATTGTGTATTGTTGGGATGAAATTGTGATAAAAAAATGAGTCAAAAAAGAAAAGAACCAAAGTGAGTATAGGAACCCAAACGAATGTTTCGAGAGTACAAGGAGACTACCATGGACAATGTTGAAAGTAGAGGGACCTAATTGAATATGTTGAAGGAACAGAAACCAAAATTGACAAAAGTTGAAAGTATGATGACTACATAGTATTTTTAACCGACATTTTTCTATTATTAATATTTAATTCCTCTTCGACTCATCATGTAGGGGGCGTAGTAGCTTAATTAGCTTTACCATCTGATTTTTCTGATAGCAGAGGTCAACCTATTTGCAATTTTCTCCTTTGTGTTAAAAATTTTCAGGGCTCATTTCTGTCTAGGAATAAATTGGATTGTTTTTGTTTATTTATGGAACCAATCTGTCTTTGAAGCTAAGATATCTGAATCAACAGGTTTATGCATGTTGTGTATATACATGGTGTTGGAGAATTCTGAATCGATCAGTGCTTTTATTTCTCCTTTTCTTAGGAGAGGAAACGACCCTATTTCACACCAAGATTCCATCTAATCTTCACTGGCTGTAACCCCGTTCTGTCACTGTAGATAGATACATCTTGTGAATATTACCGTTAACAGAATCAGACAGTCATTATATGATGGTTGTTTAGGTGGAGTAATAAATTTATTTGATGGGGGAAAAAAAAAAAAAATTCCTGAGTTCATTATTGATATTGATTACTGTTCATCATTATGAGTATCGGTTGTTTTCTGTGAAGTTGAGTGGTGTGAAAAAGAAAATATTTGGCAGGATTGTCATTTGGGTTATACCTTTTTTGTACCAACTTTTAAGTTATAAGGAGATGGAAACTTGTTCAGGAGCTAGTTCTGAATTCTCCTTTTTTGTACCTTTTTTGTTTATACTTTTTTTTTAAATAATAAATGTAAACATTTAATGGATAAA

mRNA sequence

AATTCACTGAGGGTTGACGATGAACCAAATTGAGGGGAGGAGCGAGAGCTTGAAGGACGCAGAAATGGCGAATCGCTCCATCAGCTGCAAGACAGAAGTAGGCAAACCCCTTGTAGCTCTGATTTGCGGTTCATTGGTTTATTACCATTGCGCTTATCGAAATTCCAGTCTCCTCTCCCTCGTCGCGGATGTTTTCATCGTTCTCCTTTGCTCTCTCGCCATTCTCGGCCTTCTCTTCCGCCATATGAATGTCTCTGTACCTGTGGATCCACTTGAGTGGCAAATTTCGCAGGATACTGCTAATAGTATGATAGCTTGGTTAGCCAATACCATAGGTGCGGCTGAGTCTGTACTGAGAGTCGCAGCAACAGGGCATGACAAGAGGCTTTTTGTGAAGGTCATTGTCAGTCTTTACGCTCTCTCAGTCCTTGGAAGACTGGTTTCAGGTGTTACGGTTGCCTACACTGGTTTATGCATGTTGTGTATATACATGGTGTTGGAGAATTCTGAATCGATCAGTGCTTTTATTTCTCCTTTTCTTAGGAGAGGAAACGACCCTATTTCACACCAAGATTCCATCTAATCTTCACTGGCTGTAACCCCGTTCTGTCACTGTAGATAGATACATCTTGTGAATATTACCGTTAACAGAATCAGACAGTCATTATATGATGGTTGTTTAGGTGGAGTAATAAATTTATTTGATGGGGGAAAAAAAAAAAAAATTCCTGAGTTCATTATTGATATTGATTACTGTTCATCATTATGAGTATCGGTTGTTTTCTGTGAAGTTGAGTGGTGTGAAAAAGAAAATATTTGGCAGGATTGTCATTTGGGTTATACCTTTTTTGTACCAACTTTTAAGTTATAAGGAGATGGAAACTTGTTCAGGAGCTAGTTCTGAATTCTCCTTTTTTGTACCTTTTTTGTTTATACTTTTTTTTTAAATAATAAATGTAAACATTTAATGGATAAA

Coding sequence (CDS)

ATGAACCAAATTGAGGGGAGGAGCGAGAGCTTGAAGGACGCAGAAATGGCGAATCGCTCCATCAGCTGCAAGACAGAAGTAGGCAAACCCCTTGTAGCTCTGATTTGCGGTTCATTGGTTTATTACCATTGCGCTTATCGAAATTCCAGTCTCCTCTCCCTCGTCGCGGATGTTTTCATCGTTCTCCTTTGCTCTCTCGCCATTCTCGGCCTTCTCTTCCGCCATATGAATGTCTCTGTACCTGTGGATCCACTTGAGTGGCAAATTTCGCAGGATACTGCTAATAGTATGATAGCTTGGTTAGCCAATACCATAGGTGCGGCTGAGTCTGTACTGAGAGTCGCAGCAACAGGGCATGACAAGAGGCTTTTTGTGAAGGTCATTGTCAGTCTTTACGCTCTCTCAGTCCTTGGAAGACTGGTTTCAGGTGTTACGGTTGCCTACACTGGTTTATGCATGTTGTGTATATACATGGTGTTGGAGAATTCTGAATCGATCAGTGCTTTTATTTCTCCTTTTCTTAGGAGAGGAAACGACCCTATTTCACACCAAGATTCCATCTAA
BLAST of CmoCh12G006610 vs. Swiss-Prot
Match: RTNLT_ARATH (Reticulon-like protein B22 OS=Arabidopsis thaliana GN=RTNLB22 PE=2 SV=1)

HSP 1 Score: 214.2 bits (544), Expect = 1.3e-54
Identity = 110/161 (68.32%), Postives = 135/161 (83.85%), Query Frame = 1

Query: 26  EVGKPLVALICGSLVYYHCAYRNSSLLSLVADVFIVLLCSLAILGLLFRHMNVSVPVDPL 85
           E+GK +  LI G+LVYYHCAYRN++LLSL +DVFIVLLCSLAILGLLFR +NVSVPVDPL
Sbjct: 3   EMGKAMGLLISGTLVYYHCAYRNATLLSLFSDVFIVLLCSLAILGLLFRQLNVSVPVDPL 62

Query: 86  EWQISQDTANSMIAWLANTIGAAESVLRVAATGHDKRLFVKVIVSLYALSVLGRLVSGVT 145
           EWQISQDTA++++A LANT+GAAE VLRVAATGHDKRLFVKV++ LY LS LGRL+SGVT
Sbjct: 63  EWQISQDTASNIVARLANTVGAAEGVLRVAATGHDKRLFVKVVICLYFLSALGRLISGVT 122

Query: 146 VAYTGLCMLCIYMVLENSESISAFISPFLRRGNDPISHQDS 187
           VAY GLC+ C+ M+ + S+S+   +   L+RGN  I  Q++
Sbjct: 123 VAYAGLCLFCLSMLCQTSQSLGNCV---LKRGNGQILEQEA 160

BLAST of CmoCh12G006610 vs. Swiss-Prot
Match: RTNLU_ARATH (Reticulon-like protein B23 OS=Arabidopsis thaliana GN=RTNLB23 PE=2 SV=1)

HSP 1 Score: 194.9 bits (494), Expect = 7.9e-49
Identity = 98/138 (71.01%), Postives = 121/138 (87.68%), Query Frame = 1

Query: 26  EVGKPLVALICGSLVYYHCAYRNSSLLSLVADVFIVLLCSLAILGLLFRHMNVSVPVDPL 85
           E+GK +  LI G+LVY+HCA RN++LLSL++DV IVLL SLAILGLLFRH+NVSVPVDPL
Sbjct: 3   EMGKAIGLLISGTLVYHHCANRNATLLSLISDVLIVLLSSLAILGLLFRHLNVSVPVDPL 62

Query: 86  EWQISQDTANSMIAWLANTIGAAESVLRVAATGHDKRLFVKVIVSLYALSVLGRLVSGVT 145
           EWQISQDTA +++A LANT+GAAESVLRVAATGHDKRLFVKV++ LY L+ LGR++SGVT
Sbjct: 63  EWQISQDTACNIVARLANTVGAAESVLRVAATGHDKRLFVKVVICLYFLAALGRIISGVT 122

Query: 146 VAYTGLCMLCIYMVLENS 164
           +AY GLC+ C+ M+  +S
Sbjct: 123 IAYAGLCLFCLSMLFRSS 140

BLAST of CmoCh12G006610 vs. TrEMBL
Match: A0A0A0KQM7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G487710 PE=4 SV=1)

HSP 1 Score: 322.8 bits (826), Expect = 2.8e-85
Identity = 167/187 (89.30%), Postives = 176/187 (94.12%), Query Frame = 1

Query: 1   MNQIEGRSESLKDAEMANRSISCKTEVGKPLVALICGSLVYYHCAYRNSSLLSLVADVFI 60
           M+QI GR E L+D +MA+RSI+CKTEVGKP VALICGSLVYYHCA+RNSSLLSLVADVFI
Sbjct: 2   MSQIGGRIEGLRDTQMASRSINCKTEVGKPFVALICGSLVYYHCAFRNSSLLSLVADVFI 61

Query: 61  VLLCSLAILGLLFRHMNVSVPVDPLEWQISQDTANSMIAWLANTIGAAESVLRVAATGHD 120
           VLLCSLAILGLLFRHMNVSVPVDPLEWQ+SQDTANSMIAWLANTIGAAESVLRVAATGHD
Sbjct: 62  VLLCSLAILGLLFRHMNVSVPVDPLEWQVSQDTANSMIAWLANTIGAAESVLRVAATGHD 121

Query: 121 KRLFVKVIVSLYALSVLGRLVSGVTVAYTGLCMLCIYMVLENSESISAFISPFLRRGNDP 180
           KRLFVKV+V LYALSVLGRLVSGVTVAYTGLCMLCIYMVLENSESISA ISP LRRGN+ 
Sbjct: 122 KRLFVKVVVCLYALSVLGRLVSGVTVAYTGLCMLCIYMVLENSESISAAISPILRRGNER 181

Query: 181 ISHQDSI 188
            SHQD I
Sbjct: 182 TSHQDDI 188

BLAST of CmoCh12G006610 vs. TrEMBL
Match: A0A067JYG2_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22580 PE=4 SV=1)

HSP 1 Score: 251.5 bits (641), Expect = 7.9e-64
Identity = 126/164 (76.83%), Postives = 142/164 (86.59%), Query Frame = 1

Query: 24  KTEVGKPLVALICGSLVYYHCAYRNSSLLSLVADVFIVLLCSLAILGLLFRHMNVSVPVD 83
           ++E+GKP++ LICGSLVYYHCAYRN+SLLSLV+DV IVLLCSLAILGLLFR MN+SVPVD
Sbjct: 8   RSEIGKPMIGLICGSLVYYHCAYRNASLLSLVSDVLIVLLCSLAILGLLFRQMNISVPVD 67

Query: 84  PLEWQISQDTANSMIAWLANTIGAAESVLRVAATGHDKRLFVKVIVSLYALSVLGRLVSG 143
           PLEWQISQDTANS++AW ANTIGAAESVLRVAATGHDKRLF KV++ LY LSVLGRLVSG
Sbjct: 68  PLEWQISQDTANSIVAWFANTIGAAESVLRVAATGHDKRLFFKVVICLYVLSVLGRLVSG 127

Query: 144 VTVAYTGLCMLCIYMVLENSESISAFISPFLRRGNDPISHQDSI 188
            TVAY  LC+ C+YMV ENS+S S  IS FLRRGN      DS+
Sbjct: 128 FTVAYAALCLFCLYMVTENSQSSSTSISRFLRRGNSTSLELDSM 171

BLAST of CmoCh12G006610 vs. TrEMBL
Match: M5WR47_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012399mg PE=4 SV=1)

HSP 1 Score: 250.0 bits (637), Expect = 2.3e-63
Identity = 125/156 (80.13%), Postives = 142/156 (91.03%), Query Frame = 1

Query: 24  KTEVGKPLVALICGSLVYYHCAYRNSSLLSLVADVFIVLLCSLAILGLLFRHMNVSVPVD 83
           ++EVGKP++ LICGSLVYYHCA+RNSSL+SLV+DV IVLLCSLAILGLLFR MN+SVPVD
Sbjct: 4   RSEVGKPVIVLICGSLVYYHCAHRNSSLVSLVSDVLIVLLCSLAILGLLFRQMNISVPVD 63

Query: 84  PLEWQISQDTANSMIAWLANTIGAAESVLRVAATGHDKRLFVKVIVSLYALSVLGRLVSG 143
           PLEWQISQDTANS++AWLANTIGAAESVLRVAATGHDKRLF KV+  LY LS LGRLVSG
Sbjct: 64  PLEWQISQDTANSIVAWLANTIGAAESVLRVAATGHDKRLFFKVVFCLYMLSALGRLVSG 123

Query: 144 VTVAYTGLCMLCIYMVLENSESISAFISPFLRRGND 180
           +TVAY GLC+ C+YM+ ENS+SISA +S FLRR ND
Sbjct: 124 LTVAYAGLCLFCLYMLAENSQSISACLSRFLRRTND 159

BLAST of CmoCh12G006610 vs. TrEMBL
Match: V4SPG4_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10032913mg PE=4 SV=1)

HSP 1 Score: 242.7 bits (618), Expect = 3.7e-61
Identity = 124/164 (75.61%), Postives = 140/164 (85.37%), Query Frame = 1

Query: 22  SCKTEVGKPLVALICGSLVYYHCAYRNSSLLSLVADVFIVLLCSLAILGLLFRHMNVSVP 81
           S ++EVGK L  LICGSLVYYHCAYRNSSLLSL++DVFIVLLCSLAILGLLFR MN+SVP
Sbjct: 8   SSRSEVGKALGVLICGSLVYYHCAYRNSSLLSLISDVFIVLLCSLAILGLLFRQMNISVP 67

Query: 82  VDPLEWQISQDTANSMIAWLANTIGAAESVLRVAATGHDKRLFVKVIVSLYALSVLGRLV 141
           VDPLEWQISQ+TANS++AWLANT+GAAESVLRVAATGHDKRLF KV+V LY LSVLGR+V
Sbjct: 68  VDPLEWQISQETANSIVAWLANTVGAAESVLRVAATGHDKRLFFKVVVCLYILSVLGRMV 127

Query: 142 SGVTVAYTGLCMLCIYMVLENSESISAFISPFLRRGNDPISHQD 186
           SGVTVAY GLC+ C+YM  E+S+SIS     FLR  N   +  D
Sbjct: 128 SGVTVAYAGLCLFCLYMFAESSQSISTSAPWFLRGRNGSTAESD 171

BLAST of CmoCh12G006610 vs. TrEMBL
Match: A0A059AAH5_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J00350 PE=4 SV=1)

HSP 1 Score: 237.3 bits (604), Expect = 1.5e-59
Identity = 122/163 (74.85%), Postives = 139/163 (85.28%), Query Frame = 1

Query: 24  KTEVGKPLVALICGSLVYYHCAYRNSSLLSLVADVFIVLLCSLAILGLLFRHMNVSVPVD 83
           + E+GKPL+ LICGSLVYYHCAYRNSSLLSL++DV IVLLCSLAILGLLFR +N+SVPVD
Sbjct: 2   RNEIGKPLIVLICGSLVYYHCAYRNSSLLSLLSDVLIVLLCSLAILGLLFRQLNISVPVD 61

Query: 84  PLEWQISQDTANSMIAWLANTIGAAESVLRVAATGHDKRLFVKVIVSLYALSVLGRLVSG 143
           PLEWQISQDTANS++A LANT+GA ESVLRVAATGHDKRLFVKVIV LY LS LGR +SG
Sbjct: 62  PLEWQISQDTANSIVACLANTVGATESVLRVAATGHDKRLFVKVIVCLYVLSALGRFLSG 121

Query: 144 VTVAYTGLCMLCIYMVLENSESISAFISPFLRRGNDPISHQDS 187
           VTVAY GLC+ C+YM  E+S  IS FI+ F R G+   + QDS
Sbjct: 122 VTVAYVGLCLFCLYMFAESSPLISTFIARFWRSGS---AEQDS 161

BLAST of CmoCh12G006610 vs. TAIR10
Match: AT1G78895.1 (AT1G78895.1 Reticulon family protein)

HSP 1 Score: 214.2 bits (544), Expect = 7.1e-56
Identity = 110/161 (68.32%), Postives = 135/161 (83.85%), Query Frame = 1

Query: 26  EVGKPLVALICGSLVYYHCAYRNSSLLSLVADVFIVLLCSLAILGLLFRHMNVSVPVDPL 85
           E+GK +  LI G+LVYYHCAYRN++LLSL +DVFIVLLCSLAILGLLFR +NVSVPVDPL
Sbjct: 3   EMGKAMGLLISGTLVYYHCAYRNATLLSLFSDVFIVLLCSLAILGLLFRQLNVSVPVDPL 62

Query: 86  EWQISQDTANSMIAWLANTIGAAESVLRVAATGHDKRLFVKVIVSLYALSVLGRLVSGVT 145
           EWQISQDTA++++A LANT+GAAE VLRVAATGHDKRLFVKV++ LY LS LGRL+SGVT
Sbjct: 63  EWQISQDTASNIVARLANTVGAAEGVLRVAATGHDKRLFVKVVICLYFLSALGRLISGVT 122

Query: 146 VAYTGLCMLCIYMVLENSESISAFISPFLRRGNDPISHQDS 187
           VAY GLC+ C+ M+ + S+S+   +   L+RGN  I  Q++
Sbjct: 123 VAYAGLCLFCLSMLCQTSQSLGNCV---LKRGNGQILEQEA 160

BLAST of CmoCh12G006610 vs. TAIR10
Match: AT1G16825.1 (AT1G16825.1 Reticulon family protein)

HSP 1 Score: 194.9 bits (494), Expect = 4.4e-50
Identity = 98/138 (71.01%), Postives = 121/138 (87.68%), Query Frame = 1

Query: 26  EVGKPLVALICGSLVYYHCAYRNSSLLSLVADVFIVLLCSLAILGLLFRHMNVSVPVDPL 85
           E+GK +  LI G+LVY+HCA RN++LLSL++DV IVLL SLAILGLLFRH+NVSVPVDPL
Sbjct: 3   EMGKAIGLLISGTLVYHHCANRNATLLSLISDVLIVLLSSLAILGLLFRHLNVSVPVDPL 62

Query: 86  EWQISQDTANSMIAWLANTIGAAESVLRVAATGHDKRLFVKVIVSLYALSVLGRLVSGVT 145
           EWQISQDTA +++A LANT+GAAESVLRVAATGHDKRLFVKV++ LY L+ LGR++SGVT
Sbjct: 63  EWQISQDTACNIVARLANTVGAAESVLRVAATGHDKRLFVKVVICLYFLAALGRIISGVT 122

Query: 146 VAYTGLCMLCIYMVLENS 164
           +AY GLC+ C+ M+  +S
Sbjct: 123 IAYAGLCLFCLSMLFRSS 140

BLAST of CmoCh12G006610 vs. NCBI nr
Match: gi|778703026|ref|XP_011655303.1| (PREDICTED: reticulon-like protein B22 isoform X2 [Cucumis sativus])

HSP 1 Score: 322.8 bits (826), Expect = 4.0e-85
Identity = 167/187 (89.30%), Postives = 176/187 (94.12%), Query Frame = 1

Query: 1   MNQIEGRSESLKDAEMANRSISCKTEVGKPLVALICGSLVYYHCAYRNSSLLSLVADVFI 60
           M+QI GR E L+D +MA+RSI+CKTEVGKP VALICGSLVYYHCA+RNSSLLSLVADVFI
Sbjct: 2   MSQIGGRIEGLRDTQMASRSINCKTEVGKPFVALICGSLVYYHCAFRNSSLLSLVADVFI 61

Query: 61  VLLCSLAILGLLFRHMNVSVPVDPLEWQISQDTANSMIAWLANTIGAAESVLRVAATGHD 120
           VLLCSLAILGLLFRHMNVSVPVDPLEWQ+SQDTANSMIAWLANTIGAAESVLRVAATGHD
Sbjct: 62  VLLCSLAILGLLFRHMNVSVPVDPLEWQVSQDTANSMIAWLANTIGAAESVLRVAATGHD 121

Query: 121 KRLFVKVIVSLYALSVLGRLVSGVTVAYTGLCMLCIYMVLENSESISAFISPFLRRGNDP 180
           KRLFVKV+V LYALSVLGRLVSGVTVAYTGLCMLCIYMVLENSESISA ISP LRRGN+ 
Sbjct: 122 KRLFVKVVVCLYALSVLGRLVSGVTVAYTGLCMLCIYMVLENSESISAAISPILRRGNER 181

Query: 181 ISHQDSI 188
            SHQD I
Sbjct: 182 TSHQDDI 188

BLAST of CmoCh12G006610 vs. NCBI nr
Match: gi|659131471|ref|XP_008465703.1| (PREDICTED: reticulon-like protein B22 isoform X2 [Cucumis melo])

HSP 1 Score: 322.8 bits (826), Expect = 4.0e-85
Identity = 168/187 (89.84%), Postives = 176/187 (94.12%), Query Frame = 1

Query: 1   MNQIEGRSESLKDAEMANRSISCKTEVGKPLVALICGSLVYYHCAYRNSSLLSLVADVFI 60
           M+QI GR E L+D  MA+RSI+CKTEVGKP VAL CGSLVYYHCA+RNSSLLSLVADVFI
Sbjct: 1   MSQIGGRIEGLRDTPMASRSINCKTEVGKPFVALTCGSLVYYHCAFRNSSLLSLVADVFI 60

Query: 61  VLLCSLAILGLLFRHMNVSVPVDPLEWQISQDTANSMIAWLANTIGAAESVLRVAATGHD 120
           VLLCSLAILGLLFRHMNVSVPVDPLEWQISQDTANSMIAWLANTIGAAESVLRVAATGHD
Sbjct: 61  VLLCSLAILGLLFRHMNVSVPVDPLEWQISQDTANSMIAWLANTIGAAESVLRVAATGHD 120

Query: 121 KRLFVKVIVSLYALSVLGRLVSGVTVAYTGLCMLCIYMVLENSESISAFISPFLRRGNDP 180
           KRLFVKV+V LYALSVLGRLVSGVTVAYTGLCMLCIYMVLENSESISA ISPFLRRGN+ 
Sbjct: 121 KRLFVKVVVCLYALSVLGRLVSGVTVAYTGLCMLCIYMVLENSESISAAISPFLRRGNER 180

Query: 181 ISHQDSI 188
            SHQD+I
Sbjct: 181 TSHQDAI 187

BLAST of CmoCh12G006610 vs. NCBI nr
Match: gi|778703023|ref|XP_011655302.1| (PREDICTED: reticulon-like protein B23 isoform X1 [Cucumis sativus])

HSP 1 Score: 263.5 bits (672), Expect = 2.9e-67
Identity = 136/150 (90.67%), Postives = 144/150 (96.00%), Query Frame = 1

Query: 1   MNQIEGRSESLKDAEMANRSISCKTEVGKPLVALICGSLVYYHCAYRNSSLLSLVADVFI 60
           M+QI GR E L+D +MA+RSI+CKTEVGKP VALICGSLVYYHCA+RNSSLLSLVADVFI
Sbjct: 2   MSQIGGRIEGLRDTQMASRSINCKTEVGKPFVALICGSLVYYHCAFRNSSLLSLVADVFI 61

Query: 61  VLLCSLAILGLLFRHMNVSVPVDPLEWQISQDTANSMIAWLANTIGAAESVLRVAATGHD 120
           VLLCSLAILGLLFRHMNVSVPVDPLEWQ+SQDTANSMIAWLANTIGAAESVLRVAATGHD
Sbjct: 62  VLLCSLAILGLLFRHMNVSVPVDPLEWQVSQDTANSMIAWLANTIGAAESVLRVAATGHD 121

Query: 121 KRLFVKVIVSLYALSVLGRLVSGVTVAYTG 151
           KRLFVKV+V LYALSVLGRLVSGVTVAYTG
Sbjct: 122 KRLFVKVVVCLYALSVLGRLVSGVTVAYTG 151

BLAST of CmoCh12G006610 vs. NCBI nr
Match: gi|659131469|ref|XP_008465702.1| (PREDICTED: reticulon-like protein B23 isoform X1 [Cucumis melo])

HSP 1 Score: 260.8 bits (665), Expect = 1.9e-66
Identity = 136/150 (90.67%), Postives = 142/150 (94.67%), Query Frame = 1

Query: 1   MNQIEGRSESLKDAEMANRSISCKTEVGKPLVALICGSLVYYHCAYRNSSLLSLVADVFI 60
           M+QI GR E L+D  MA+RSI+CKTEVGKP VAL CGSLVYYHCA+RNSSLLSLVADVFI
Sbjct: 1   MSQIGGRIEGLRDTPMASRSINCKTEVGKPFVALTCGSLVYYHCAFRNSSLLSLVADVFI 60

Query: 61  VLLCSLAILGLLFRHMNVSVPVDPLEWQISQDTANSMIAWLANTIGAAESVLRVAATGHD 120
           VLLCSLAILGLLFRHMNVSVPVDPLEWQISQDTANSMIAWLANTIGAAESVLRVAATGHD
Sbjct: 61  VLLCSLAILGLLFRHMNVSVPVDPLEWQISQDTANSMIAWLANTIGAAESVLRVAATGHD 120

Query: 121 KRLFVKVIVSLYALSVLGRLVSGVTVAYTG 151
           KRLFVKV+V LYALSVLGRLVSGVTVAYTG
Sbjct: 121 KRLFVKVVVCLYALSVLGRLVSGVTVAYTG 150

BLAST of CmoCh12G006610 vs. NCBI nr
Match: gi|658065281|ref|XP_008368596.1| (PREDICTED: reticulon-like protein B22 [Malus domestica])

HSP 1 Score: 255.4 bits (651), Expect = 7.9e-65
Identity = 129/159 (81.13%), Postives = 144/159 (90.57%), Query Frame = 1

Query: 21  ISCKTEVGKPLVALICGSLVYYHCAYRNSSLLSLVADVFIVLLCSLAILGLLFRHMNVSV 80
           +  ++EVGKP+V LICGSLVYYHCA+RNSSLLSLV+DVFIVLLCSLAILGLLFR MNVSV
Sbjct: 5   VDYRSEVGKPVVVLICGSLVYYHCAHRNSSLLSLVSDVFIVLLCSLAILGLLFRQMNVSV 64

Query: 81  PVDPLEWQISQDTANSMIAWLANTIGAAESVLRVAATGHDKRLFVKVIVSLYALSVLGRL 140
           PVDPLEWQISQDTANS++AWLANT+GAAESVLRVAATGHDKRLF KV+ SLY LS LGRL
Sbjct: 65  PVDPLEWQISQDTANSIVAWLANTVGAAESVLRVAATGHDKRLFFKVVFSLYMLSALGRL 124

Query: 141 VSGVTVAYTGLCMLCIYMVLENSESISAFISPFLRRGND 180
           +SG+TVAY GLC+ C+YMV ENSESISA +S FLRR  D
Sbjct: 125 ISGLTVAYIGLCLFCLYMVAENSESISACLSRFLRRTTD 163

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
RTNLT_ARATH1.3e-5468.32Reticulon-like protein B22 OS=Arabidopsis thaliana GN=RTNLB22 PE=2 SV=1[more]
RTNLU_ARATH7.9e-4971.01Reticulon-like protein B23 OS=Arabidopsis thaliana GN=RTNLB23 PE=2 SV=1[more]
Match NameE-valueIdentityDescription
A0A0A0KQM7_CUCSA2.8e-8589.30Uncharacterized protein OS=Cucumis sativus GN=Csa_5G487710 PE=4 SV=1[more]
A0A067JYG2_JATCU7.9e-6476.83Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22580 PE=4 SV=1[more]
M5WR47_PRUPE2.3e-6380.13Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012399mg PE=4 SV=1[more]
V4SPG4_9ROSI3.7e-6175.61Uncharacterized protein OS=Citrus clementina GN=CICLE_v10032913mg PE=4 SV=1[more]
A0A059AAH5_EUCGR1.5e-5974.85Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J00350 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT1G78895.17.1e-5668.32 Reticulon family protein[more]
AT1G16825.14.4e-5071.01 Reticulon family protein[more]
Match NameE-valueIdentityDescription
gi|778703026|ref|XP_011655303.1|4.0e-8589.30PREDICTED: reticulon-like protein B22 isoform X2 [Cucumis sativus][more]
gi|659131471|ref|XP_008465703.1|4.0e-8589.84PREDICTED: reticulon-like protein B22 isoform X2 [Cucumis melo][more]
gi|778703023|ref|XP_011655302.1|2.9e-6790.67PREDICTED: reticulon-like protein B23 isoform X1 [Cucumis sativus][more]
gi|659131469|ref|XP_008465702.1|1.9e-6690.67PREDICTED: reticulon-like protein B23 isoform X1 [Cucumis melo][more]
gi|658065281|ref|XP_008368596.1|7.9e-6581.13PREDICTED: reticulon-like protein B22 [Malus domestica][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR003388Reticulon
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh12G006610.1CmoCh12G006610.1mRNA


Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003388ReticulonPFAMPF02453Reticuloncoord: 33..156
score: 2.9