Cla003257 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla003257
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Reticulon-like protein B22 (AHRD V1 ***- RTNLT_ARATH); contains Interpro domain(s) IPR003388 Reticulon
Location	Chr9 : 32800099 .. 32803474 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGAATCGCACGATCAACTCCAAGACAGAAGTAGGCAAACCCTTTGTAGCTTTGATTTGCGGTTCATTGGTTTATTACCATTGCGCTTATCGAAATTCCAGTCTCCTCTCCCTTGTCGCTGACGTTTTCATCGTTCTCCTTTGCTCTCTCGCCATTCTCGGCCTTCTCTTCCGCCATATGAATGTCTCGTAAGCTTTCCCTTCTTTTTCCTCTTTCTTTTATCTGTCTTTCCGCCAAATTATGTGCTTTCTTTGAATCTTTTGTTGGATAAACAGATTATCCTGTTCCTTTGAATCCTATGTGCTTCTAGGGTATTTACTAGATTTGAGAACTTCTTGGAGGTTGTCTTGAATGGTTGGAATTTTGATAATAGTCGGTTTCACTTTTTTAGAAATGCGATGTTGTTGAACTTAGATTCTCCATCTGTATGCATATCCTTATCCTCGTTGTGATCTTGAATTTATATTATTTGAATGCTAAAATTTAAATGATCTGTAGGGTACCAGTGGACCCTCTTGAGTGGCAAATATCGCAGGATACTGCTAATAGTATGATTGCTTGGTTAGCGAATACCATAGGTGCGGCTGAGTCTGTTCTGAGGGTGGCAGCAACAGGGCATGATAAGAGGCTTTTTGTTAAGGTATTGCTCTTTGATTATCATTAATTTGTACATTAGTGGCCTACACAGTTTTGATTAGTATTATTAACTAAGCTTCTTTCAGTGAGTTTTGGGTTATTGTATGAACTCGAACAGGATTTTTTCTTCTTCTTTTTCTTAACTTTTATTTTCTCTGTGAAACATAAATTCCAAAGGAAATTACAAAGAACACTCACACTGGGCTATAAGAGTAGTAAGGCTATAGGTACCCAACAAGTGGCGAGAATATACACCAAGTAACAGCAAGATTAGAAAGATGTTAAAAAAGCAATGGAAGTCCTTTTCCTTTTCCTCAGAAGTACAATGTTCTCTTTCAGTCCAAATGTACCTAATGAGATGTCATTTTTTCTTGAATAGATGGCCGATTAGCCAGTAATGATAAAGAATCCCTCGATAGAGCCATGGACCAATTGAAACAAACGGGTGGTCTCCAAAAGCCCATTAGCGAGACTTTAAAGTTTTCTATCTATCTTACCCCCTCCTTGAAATTGAAAGATTTATGTATGGAAAATTTGAAGGTAGAATTTTGTTTCTCCCCTTGAAATTATTATAACACCGCCCCTGATTAAGCCTGCCTATCTCATCAAAATCCGCCTAAGCCTTTAAACAATTGCAATCCAGTTGTCATGTCAATCCCGTAAACTCTATTATAAATCTATCTCTTTCCTTACCCAGCTTTATTATAAATTGAAGGCAGGCTCCATATATGTCATATTGTGAAAATATTGCAAATCCTCTTCAAAATAAACTTGCTGCGTTCTTTTCATGAACTTTTCCATTCTTTTCTTCAAAAATTTAATTTGAAAATTTCGTACCATTTCCAAAAAATGACATCTCATTTTTCTCACCAAAAGGACAACAATCCTTCTTTTTCTTCCGTTGCCAGAAAAAGTAGAATATTTAACATATTTACCTAACGATTTGCACATTTCAACAAACTCATTATAAACATGCAGTCCATGGAGTCATTCCTAATTAACGCACATGGTTCTAGCTTAATTATCTGCTGTTTTGATGGTATTTTGGCATATTAGACTAACAATTACTCATAATGTTGGACCTATGAAAAAATCGTGTGCATGTTTCTGTTGCCATCCAAATTCTTTCTCAATTATAGCTTATGTTTTAATTATGGTCAATTGGAGGGCTTTTGTGTTATCACTTTGGCCGGAGTTTGGGTTCCTAAATCTTTTCTTGTAAACTAACATTTTGGAACAAGTGTTTTCCTACCACCTTCCTTGAACGAGATTTGTTCTTTGGGTTACACAACTGTATCCTTATCCTTGAGTTCTGGAACAAGCATTTCCCTTCTCTTATAAGAGAAAACTTGGTGTGCTAGCATTTCTGTACCATTACTTATAGTGAATCTAGACAAATTTATATAAACATGTCTGAGTGCCATGTGAATTCAAACCGTTCTTACAACCCATGGAAGGAGTCTAAAATGCTATATTGTAAAAATAAATAAATATGTATATATGTATCAGACAAATTGCACAACCGAGGTGTTTGTTCATTTAGATCAAATAATAAACATCGTGTAATTGGTATCAAGTTACATTGATAAACTATGAGGTTTCAGCGGCACATATTATAGGTTAAATGGTACAAAATACTTTTGTTCTTCAGCATATCCCTAAGCTTTGAAATTTTTCGTTTTAATTTTTAAACTTCGAAATTATTCCAATAAATACATTTGGAAATTCCCTCTGGGCTTCTATGATGAGTTCTTTTTGTAATTATTTATTAGATCATATTTTGTTAGATTGGAGACCCTTCTTCTAGGGTGCTCCCTTTTGTGGGCTTGGCTTTTTTGTATGTCCTTATATTCTTATAGAATATAGAATTAGTTGCCGCATCAATTTTAATGTCCTTCATTTTAACAATAGAAAGGAGAAACCGCTATAAAAAGATTGAACATGTGAGAGGATCCAAACAAATTTTGCTTACATTTTCCCCTATAGAGCACAAAATGTTCCAAAGTTAAAAATGAAACTTTTCAAAGTTTAATGATATAATTAAAACTTACTCCAAAGTTCACGAGTATTATACACCTAGTATATGCAACCATTTGCGAGAGCTAAGTTGCTCTACCTAATAAGGTCTTTCAGAGAACCATCCCTTAACAAGAATAGCTGTATAACTGTACTGATCTTTCATCTTGTGCTTGTAAACTAAAGTTATGCAAATGTTTCTATAGGTCGTTGTTTGCCTTTATGCTCTCTCGGTGCTTGGAAGATTGGTTTCAGGTGTTACAGTTGCCTACACTGGTATGTCTGGCCTTTCTACTTGTTTATATTTCTTCTATCTCACAAGAAAATAAATATGCATGACGATTTGATTGGAGAATTTTCTATGCTCTTCATATTTAATTCCTCTACATCTCGTCATCTGGTGGGCATTGCAGTCTAATTTGTTATACGATCTGATTTAGTCGCATGGCAGTTACACATACCCTATTCACAATTTCACTACACTTTTGTTATAATTTTTAAGATTATTCCGAGACTCATTTCTGTTTATATTAGAGATAATTAGATCCTTGTTGCATATTTATGGAACTAATCTGTCATTGATGCTAGTTGCTCTGAATTGACAGGTTTATGCATGTTGTGTATATACATGGTGTTGGAGAATTCTGAGTCAATAAGTGCTTCTATTTCTCCTTTCCTTAGGAGAGGAAACGACCCTACTCCACATCAAGATGCCATCTAA

mRNA sequence

ATGGCGAATCGCACGATCAACTCCAAGACAGAAGTAGGCAAACCCTTTGTAGCTTTGATTTGCGGTTCATTGGTTTATTACCATTGCGCTTATCGAAATTCCAGTCTCCTCTCCCTTGTCGCTGACGTTTTCATCGTTCTCCTTTGCTCTCTCGCCATTCTCGGCCTTCTCTTCCGCCATATGAATGTCTCGGTACCAGTGGACCCTCTTGAGTGGCAAATATCGCAGGATACTGCTAATAGTATGATTGCTTGGTTAGCGAATACCATAGGTGCGGCTGAGTCTGTTCTGAGGGTGGCAGCAACAGGGCATGATAAGAGGCTTTTTGTTAAGGTCGTTGTTTGCCTTTATGCTCTCTCGGTGCTTGGAAGATTGGTTTCAGGTGTTACAGTTGCCTACACTGGTTTATGCATGTTGTGTATATACATGGTGTTGGAGAATTCTGAGTCAATAAGTGCTTCTATTTCTCCTTTCCTTAGGAGAGGAAACGACCCTACTCCACATCAAGATGCCATCTAA

Coding sequence (CDS)

ATGGCGAATCGCACGATCAACTCCAAGACAGAAGTAGGCAAACCCTTTGTAGCTTTGATTTGCGGTTCATTGGTTTATTACCATTGCGCTTATCGAAATTCCAGTCTCCTCTCCCTTGTCGCTGACGTTTTCATCGTTCTCCTTTGCTCTCTCGCCATTCTCGGCCTTCTCTTCCGCCATATGAATGTCTCGGTACCAGTGGACCCTCTTGAGTGGCAAATATCGCAGGATACTGCTAATAGTATGATTGCTTGGTTAGCGAATACCATAGGTGCGGCTGAGTCTGTTCTGAGGGTGGCAGCAACAGGGCATGATAAGAGGCTTTTTGTTAAGGTCGTTGTTTGCCTTTATGCTCTCTCGGTGCTTGGAAGATTGGTTTCAGGTGTTACAGTTGCCTACACTGGTTTATGCATGTTGTGTATATACATGGTGTTGGAGAATTCTGAGTCAATAAGTGCTTCTATTTCTCCTTTCCTTAGGAGAGGAAACGACCCTACTCCACATCAAGATGCCATCTAA

Protein sequence

MANRTINSKTEVGKPFVALICGSLVYYHCAYRNSSLLSLVADVFIVLLCSLAILGLLFRHMNVSVPVDPLEWQISQDTANSMIAWLANTIGAAESVLRVAATGHDKRLFVKVVVCLYALSVLGRLVSGVTVAYTGLCMLCIYMVLENSESISASISPFLRRGNDPTPHQDAI

Homology

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BLAST of Cla003257 vs. Swiss-Prot
Match: RTNLT_ARATH (Reticulon-like protein B22 OS=Arabidopsis thaliana GN=RTNLB22 PE=2 SV=1)

HSP 1 Score: 224.6 bits (571), Expect = 8.5e-58
Identity = 112/161 (69.57%), Postives = 132/161 (81.99%), Query Frame = 1


Query: 11  EVGKPFVALICGSLVYYHCAYRNSSLLSLVADVFIVLLCSLAILGLLFRHMNVSVPVDPL 70
           E+GK    LI G+LVYYHCAYRN++LLSL +DVFIVLLCSLAILGLLFR +NVSVPVDPL
Sbjct: 3   EMGKAMGLLISGTLVYYHCAYRNATLLSLFSDVFIVLLCSLAILGLLFRQLNVSVPVDPL 62

Query: 71  EWQISQDTANSMIAWLANTIGAAESVLRVAATGHDKRLFVKVVVCLYALSVLGRLVSGVT 130
           EWQISQDTA++++A LANT+GAAE VLRVAATGHDKRLFVKVV+CLY LS LGRL+SGVT
Sbjct: 63  EWQISQDTASNIVARLANTVGAAEGVLRVAATGHDKRLFVKVVICLYFLSALGRLISGVT 122

Query: 131 VAYTGLCMLCIYMVLENSESISASISPFLRRGNDPTPHQDA 172
           VAY GLC+ C+ M+ + S+S+   +   L+RGN     Q+A
Sbjct: 123 VAYAGLCLFCLSMLCQTSQSLGNCV---LKRGNGQILEQEA 160

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BLAST of Cla003257 vs. Swiss-Prot
Match: RTNLU_ARATH (Reticulon-like protein B23 OS=Arabidopsis thaliana GN=RTNLB23 PE=2 SV=1)

HSP 1 Score: 206.8 bits (525), Expect = 1.8e-52
Identity = 100/138 (72.46%), Postives = 119/138 (86.23%), Query Frame = 1


Query: 11  EVGKPFVALICGSLVYYHCAYRNSSLLSLVADVFIVLLCSLAILGLLFRHMNVSVPVDPL 70
           E+GK    LI G+LVY+HCA RN++LLSL++DV IVLL SLAILGLLFRH+NVSVPVDPL
Sbjct: 3   EMGKAIGLLISGTLVYHHCANRNATLLSLISDVLIVLLSSLAILGLLFRHLNVSVPVDPL 62

Query: 71  EWQISQDTANSMIAWLANTIGAAESVLRVAATGHDKRLFVKVVVCLYALSVLGRLVSGVT 130
           EWQISQDTA +++A LANT+GAAESVLRVAATGHDKRLFVKVV+CLY L+ LGR++SGVT
Sbjct: 63  EWQISQDTACNIVARLANTVGAAESVLRVAATGHDKRLFVKVVICLYFLAALGRIISGVT 122

Query: 131 VAYTGLCMLCIYMVLENS 149
           +AY GLC+ C+ M+  +S
Sbjct: 123 IAYAGLCLFCLSMLFRSS 140

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BLAST of Cla003257 vs. TrEMBL
Match: A0A0A0KQM7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G487710 PE=4 SV=1)

HSP 1 Score: 319.7 bits (818), Expect = 2.2e-84
Identity = 161/172 (93.60%), Postives = 167/172 (97.09%), Query Frame = 1


Query: 1   MANRTINSKTEVGKPFVALICGSLVYYHCAYRNSSLLSLVADVFIVLLCSLAILGLLFRH 60
           MA+R+IN KTEVGKPFVALICGSLVYYHCA+RNSSLLSLVADVFIVLLCSLAILGLLFRH
Sbjct: 17  MASRSINCKTEVGKPFVALICGSLVYYHCAFRNSSLLSLVADVFIVLLCSLAILGLLFRH 76

Query: 61  MNVSVPVDPLEWQISQDTANSMIAWLANTIGAAESVLRVAATGHDKRLFVKVVVCLYALS 120
           MNVSVPVDPLEWQ+SQDTANSMIAWLANTIGAAESVLRVAATGHDKRLFVKVVVCLYALS
Sbjct: 77  MNVSVPVDPLEWQVSQDTANSMIAWLANTIGAAESVLRVAATGHDKRLFVKVVVCLYALS 136

Query: 121 VLGRLVSGVTVAYTGLCMLCIYMVLENSESISASISPFLRRGNDPTPHQDAI 173
           VLGRLVSGVTVAYTGLCMLCIYMVLENSESISA+ISP LRRGN+ T HQD I
Sbjct: 137 VLGRLVSGVTVAYTGLCMLCIYMVLENSESISAAISPILRRGNERTSHQDDI 188

[Close]

BLAST of Cla003257 vs. TrEMBL
Match: A0A067JYG2_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22580 PE=4 SV=1)

HSP 1 Score: 266.5 bits (680), Expect = 2.2e-68
Identity = 129/166 (77.71%), Postives = 145/166 (87.35%), Query Frame = 1


Query: 7   NSKTEVGKPFVALICGSLVYYHCAYRNSSLLSLVADVFIVLLCSLAILGLLFRHMNVSVP 66
           N ++E+GKP + LICGSLVYYHCAYRN+SLLSLV+DV IVLLCSLAILGLLFR MN+SVP
Sbjct: 6   NKRSEIGKPMIGLICGSLVYYHCAYRNASLLSLVSDVLIVLLCSLAILGLLFRQMNISVP 65

Query: 67  VDPLEWQISQDTANSMIAWLANTIGAAESVLRVAATGHDKRLFVKVVVCLYALSVLGRLV 126
           VDPLEWQISQDTANS++AW ANTIGAAESVLRVAATGHDKRLF KVV+CLY LSVLGRLV
Sbjct: 66  VDPLEWQISQDTANSIVAWFANTIGAAESVLRVAATGHDKRLFFKVVICLYVLSVLGRLV 125

Query: 127 SGVTVAYTGLCMLCIYMVLENSESISASISPFLRRGNDPTPHQDAI 173
           SG TVAY  LC+ C+YMV ENS+S S SIS FLRRGN  +   D++
Sbjct: 126 SGFTVAYAALCLFCLYMVTENSQSSSTSISRFLRRGNSTSLELDSM 171

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BLAST of Cla003257 vs. TrEMBL
Match: M5WR47_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012399mg PE=4 SV=1)

HSP 1 Score: 261.5 bits (667), Expect = 7.0e-67
Identity = 127/156 (81.41%), Postives = 142/156 (91.03%), Query Frame = 1


Query: 9   KTEVGKPFVALICGSLVYYHCAYRNSSLLSLVADVFIVLLCSLAILGLLFRHMNVSVPVD 68
           ++EVGKP + LICGSLVYYHCA+RNSSL+SLV+DV IVLLCSLAILGLLFR MN+SVPVD
Sbjct: 4   RSEVGKPVIVLICGSLVYYHCAHRNSSLVSLVSDVLIVLLCSLAILGLLFRQMNISVPVD 63

Query: 69  PLEWQISQDTANSMIAWLANTIGAAESVLRVAATGHDKRLFVKVVVCLYALSVLGRLVSG 128
           PLEWQISQDTANS++AWLANTIGAAESVLRVAATGHDKRLF KVV CLY LS LGRLVSG
Sbjct: 64  PLEWQISQDTANSIVAWLANTIGAAESVLRVAATGHDKRLFFKVVFCLYMLSALGRLVSG 123

Query: 129 VTVAYTGLCMLCIYMVLENSESISASISPFLRRGND 165
           +TVAY GLC+ C+YM+ ENS+SISA +S FLRR ND
Sbjct: 124 LTVAYAGLCLFCLYMLAENSQSISACLSRFLRRTND 159

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BLAST of Cla003257 vs. TrEMBL
Match: V4SPG4_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10032913mg PE=4 SV=1)

HSP 1 Score: 257.3 bits (656), Expect = 1.3e-65
Identity = 127/164 (77.44%), Postives = 142/164 (86.59%), Query Frame = 1


Query: 7   NSKTEVGKPFVALICGSLVYYHCAYRNSSLLSLVADVFIVLLCSLAILGLLFRHMNVSVP 66
           +S++EVGK    LICGSLVYYHCAYRNSSLLSL++DVFIVLLCSLAILGLLFR MN+SVP
Sbjct: 8   SSRSEVGKALGVLICGSLVYYHCAYRNSSLLSLISDVFIVLLCSLAILGLLFRQMNISVP 67

Query: 67  VDPLEWQISQDTANSMIAWLANTIGAAESVLRVAATGHDKRLFVKVVVCLYALSVLGRLV 126
           VDPLEWQISQ+TANS++AWLANT+GAAESVLRVAATGHDKRLF KVVVCLY LSVLGR+V
Sbjct: 68  VDPLEWQISQETANSIVAWLANTVGAAESVLRVAATGHDKRLFFKVVVCLYILSVLGRMV 127

Query: 127 SGVTVAYTGLCMLCIYMVLENSESISASISPFLRRGNDPTPHQD 171
           SGVTVAY GLC+ C+YM  E+S+SIS S   FLR  N  T   D
Sbjct: 128 SGVTVAYAGLCLFCLYMFAESSQSISTSAPWFLRGRNGSTAESD 171

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BLAST of Cla003257 vs. TrEMBL
Match: F6GYL8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_09s0054g00800 PE=4 SV=1)

HSP 1 Score: 245.7 bits (626), Expect = 4.0e-62
Identity = 117/159 (73.58%), Postives = 141/159 (88.68%), Query Frame = 1


Query: 3   NRTINSKTEVGKPFVALICGSLVYYHCAYRNSSLLSLVADVFIVLLCSLAILGLLFRHMN 62
           NR ++ + E+GKP + +ICG+L+YYHCAYRNS+LL+LV+DV IVLLCSLAILGLLFR +N
Sbjct: 25  NREMDYRAEIGKPVIVMICGTLIYYHCAYRNSTLLTLVSDVLIVLLCSLAILGLLFRQIN 84

Query: 63  VSVPVDPLEWQISQDTANSMIAWLANTIGAAESVLRVAATGHDKRLFVKVVVCLYALSVL 122
           +SVPVDPLEWQISQDTAN+++A +ANTIGAAESVLRVAATGHDKRLFVKVVVCLY LS L
Sbjct: 85  ISVPVDPLEWQISQDTANNIVACMANTIGAAESVLRVAATGHDKRLFVKVVVCLYVLSAL 144

Query: 123 GRLVSGVTVAYTGLCMLCIYMVLENSESISASISPFLRR 162
           GR+VSGVTVAY GL + C+YM  ENS++I A +S F+RR
Sbjct: 145 GRVVSGVTVAYAGLWLFCLYMFAENSQTICACMSRFMRR 183

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BLAST of Cla003257 vs. NCBI nr
Match: gi|659131471|ref|XP_008465703.1| (PREDICTED: reticulon-like protein B22 isoform X2 [Cucumis melo])

HSP 1 Score: 322.8 bits (826), Expect = 3.7e-85
Identity = 163/172 (94.77%), Postives = 168/172 (97.67%), Query Frame = 1


Query: 1   MANRTINSKTEVGKPFVALICGSLVYYHCAYRNSSLLSLVADVFIVLLCSLAILGLLFRH 60
           MA+R+IN KTEVGKPFVAL CGSLVYYHCA+RNSSLLSLVADVFIVLLCSLAILGLLFRH
Sbjct: 16  MASRSINCKTEVGKPFVALTCGSLVYYHCAFRNSSLLSLVADVFIVLLCSLAILGLLFRH 75

Query: 61  MNVSVPVDPLEWQISQDTANSMIAWLANTIGAAESVLRVAATGHDKRLFVKVVVCLYALS 120
           MNVSVPVDPLEWQISQDTANSMIAWLANTIGAAESVLRVAATGHDKRLFVKVVVCLYALS
Sbjct: 76  MNVSVPVDPLEWQISQDTANSMIAWLANTIGAAESVLRVAATGHDKRLFVKVVVCLYALS 135

Query: 121 VLGRLVSGVTVAYTGLCMLCIYMVLENSESISASISPFLRRGNDPTPHQDAI 173
           VLGRLVSGVTVAYTGLCMLCIYMVLENSESISA+ISPFLRRGN+ T HQDAI
Sbjct: 136 VLGRLVSGVTVAYTGLCMLCIYMVLENSESISAAISPFLRRGNERTSHQDAI 187

[Close]

BLAST of Cla003257 vs. NCBI nr
Match: gi|778703026|ref|XP_011655303.1| (PREDICTED: reticulon-like protein B22 isoform X2 [Cucumis sativus])

HSP 1 Score: 319.7 bits (818), Expect = 3.1e-84
Identity = 161/172 (93.60%), Postives = 167/172 (97.09%), Query Frame = 1


Query: 1   MANRTINSKTEVGKPFVALICGSLVYYHCAYRNSSLLSLVADVFIVLLCSLAILGLLFRH 60
           MA+R+IN KTEVGKPFVALICGSLVYYHCA+RNSSLLSLVADVFIVLLCSLAILGLLFRH
Sbjct: 17  MASRSINCKTEVGKPFVALICGSLVYYHCAFRNSSLLSLVADVFIVLLCSLAILGLLFRH 76

Query: 61  MNVSVPVDPLEWQISQDTANSMIAWLANTIGAAESVLRVAATGHDKRLFVKVVVCLYALS 120
           MNVSVPVDPLEWQ+SQDTANSMIAWLANTIGAAESVLRVAATGHDKRLFVKVVVCLYALS
Sbjct: 77  MNVSVPVDPLEWQVSQDTANSMIAWLANTIGAAESVLRVAATGHDKRLFVKVVVCLYALS 136

Query: 121 VLGRLVSGVTVAYTGLCMLCIYMVLENSESISASISPFLRRGNDPTPHQDAI 173
           VLGRLVSGVTVAYTGLCMLCIYMVLENSESISA+ISP LRRGN+ T HQD I
Sbjct: 137 VLGRLVSGVTVAYTGLCMLCIYMVLENSESISAAISPILRRGNERTSHQDDI 188

[Close]

BLAST of Cla003257 vs. NCBI nr
Match: gi|694409144|ref|XP_009379216.1| (PREDICTED: reticulon-like protein B22 [Pyrus x bretschneideri])

HSP 1 Score: 267.7 bits (683), Expect = 1.4e-68
Identity = 131/168 (77.98%), Postives = 148/168 (88.10%), Query Frame = 1


Query: 4   RTINSKTEVGKPFVALICGSLVYYHCAYRNSSLLSLVADVFIVLLCSLAILGLLFRHMNV 63
           + ++ ++EVGKP V LICGSLVYYHCA+RNSSLLSL++DV IVLLCSLAILGLLFR MNV
Sbjct: 2   KNVDFRSEVGKPVVVLICGSLVYYHCAHRNSSLLSLLSDVLIVLLCSLAILGLLFRQMNV 61

Query: 64  SVPVDPLEWQISQDTANSMIAWLANTIGAAESVLRVAATGHDKRLFVKVVVCLYALSVLG 123
           SVPVDPLEWQISQDTANS++AWLANT+GAAESVLRVAATGHDKRLFVKVV+CLY LS LG
Sbjct: 62  SVPVDPLEWQISQDTANSIVAWLANTVGAAESVLRVAATGHDKRLFVKVVICLYMLSALG 121

Query: 124 RLVSGVTVAYTGLCMLCIYMVLENSESISASISPFLRRGNDPTPHQDA 172
           RL+SG+TVAY GLC+ C+YMV ENSESISA +S FLRR  D T    A
Sbjct: 122 RLISGLTVAYVGLCLFCLYMVAENSESISACLSRFLRRTTDLTEEDAA 169

[Close]

BLAST of Cla003257 vs. NCBI nr
Match: gi|658059639|ref|XP_008365647.1| (PREDICTED: reticulon-like protein B22 [Malus domestica])

HSP 1 Score: 267.3 bits (682), Expect = 1.8e-68
Identity = 130/163 (79.75%), Postives = 147/163 (90.18%), Query Frame = 1


Query: 4   RTINSKTEVGKPFVALICGSLVYYHCAYRNSSLLSLVADVFIVLLCSLAILGLLFRHMNV 63
           + ++ ++EVGKP V LICGSLVYYHCA+RNSSLLSL++DV IVLLCSLAILGLLFR MNV
Sbjct: 2   KNVDFRSEVGKPVVVLICGSLVYYHCAHRNSSLLSLLSDVLIVLLCSLAILGLLFRQMNV 61

Query: 64  SVPVDPLEWQISQDTANSMIAWLANTIGAAESVLRVAATGHDKRLFVKVVVCLYALSVLG 123
           SVPVDPLEWQISQDTANS++AWLANT+GAAESVLRVAATGHDKRLFVKVV+CLY LS LG
Sbjct: 62  SVPVDPLEWQISQDTANSIVAWLANTVGAAESVLRVAATGHDKRLFVKVVICLYMLSALG 121

Query: 124 RLVSGVTVAYTGLCMLCIYMVLENSESISASISPFLRRGNDPT 167
           RL+SG+TVAY GLC+ C+YMV ENSESISA +S FLRR  D T
Sbjct: 122 RLISGLTVAYVGLCLFCLYMVAENSESISACLSRFLRRTTDLT 164

[Close]

BLAST of Cla003257 vs. NCBI nr
Match: gi|802742412|ref|XP_012087311.1| (PREDICTED: reticulon-like protein B22 [Jatropha curcas])

HSP 1 Score: 266.5 bits (680), Expect = 3.1e-68
Identity = 129/166 (77.71%), Postives = 145/166 (87.35%), Query Frame = 1


Query: 7   NSKTEVGKPFVALICGSLVYYHCAYRNSSLLSLVADVFIVLLCSLAILGLLFRHMNVSVP 66
           N ++E+GKP + LICGSLVYYHCAYRN+SLLSLV+DV IVLLCSLAILGLLFR MN+SVP
Sbjct: 6   NKRSEIGKPMIGLICGSLVYYHCAYRNASLLSLVSDVLIVLLCSLAILGLLFRQMNISVP 65

Query: 67  VDPLEWQISQDTANSMIAWLANTIGAAESVLRVAATGHDKRLFVKVVVCLYALSVLGRLV 126
           VDPLEWQISQDTANS++AW ANTIGAAESVLRVAATGHDKRLF KVV+CLY LSVLGRLV
Sbjct: 66  VDPLEWQISQDTANSIVAWFANTIGAAESVLRVAATGHDKRLFFKVVICLYVLSVLGRLV 125

Query: 127 SGVTVAYTGLCMLCIYMVLENSESISASISPFLRRGNDPTPHQDAI 173
           SG TVAY  LC+ C+YMV ENS+S S SIS FLRRGN  +   D++
Sbjct: 126 SGFTVAYAALCLFCLYMVTENSQSSSTSISRFLRRGNSTSLELDSM 171

The following BLAST results are available for this feature:

BLAST of Cla003257 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RTNLT_ARATH	8.5e-58	69.57	Reticulon-like protein B22 OS=Arabidopsis thaliana GN=RTNLB22 PE=2 SV=1	[more]
RTNLU_ARATH	1.8e-52	72.46	Reticulon-like protein B23 OS=Arabidopsis thaliana GN=RTNLB23 PE=2 SV=1	[more]

BLAST of Cla003257 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KQM7_CUCSA	2.2e-84	93.60	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G487710 PE=4 SV=1	[more]
A0A067JYG2_JATCU	2.2e-68	77.71	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22580 PE=4 SV=1	[more]
M5WR47_PRUPE	7.0e-67	81.41	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012399mg PE=4 SV=1	[more]
V4SPG4_9ROSI	1.3e-65	77.44	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10032913mg PE=4 SV=1	[more]
F6GYL8_VITVI	4.0e-62	73.58	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_09s0054g00800 PE=4 SV=...	[more]

BLAST of Cla003257 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659131471\|ref\|XP_008465703.1\|	3.7e-85	94.77	PREDICTED: reticulon-like protein B22 isoform X2 [Cucumis melo]	[more]
gi\|778703026\|ref\|XP_011655303.1\|	3.1e-84	93.60	PREDICTED: reticulon-like protein B22 isoform X2 [Cucumis sativus]	[more]
gi\|694409144\|ref\|XP_009379216.1\|	1.4e-68	77.98	PREDICTED: reticulon-like protein B22 [Pyrus x bretschneideri]	[more]
gi\|658059639\|ref\|XP_008365647.1\|	1.8e-68	79.75	PREDICTED: reticulon-like protein B22 [Malus domestica]	[more]
gi\|802742412\|ref\|XP_012087311.1\|	3.1e-68	77.71	PREDICTED: reticulon-like protein B22 [Jatropha curcas]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR003388	Reticulon

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
WMU39411	watermelon unigene v2 vs TrEMBL	transcribed_cluster
WMU66505	watermelon EST collection version 2.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla003257	Cla003257.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
WMU39411	WMU39411	transcribed_cluster
WMU66505	WMU66505	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003388	Reticulon	PFAM	PF02453	Reticulon	coord: 17..140 score: 5.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla003257	Cla97C09G182200	Watermelon (97103) v2	wmwmbB042
Cla003257	Csa5G487710	Cucumber (Chinese Long) v2	cuwmB363
Cla003257	MELO3C002923	Melon (DHL92) v3.5.1	mewmB003
Cla003257	ClCG09G020780	Watermelon (Charleston Gray)	wcgwmB008
Cla003257	CSPI05G16540	Wild cucumber (PI 183967)	cpiwmB369
Cla003257	Cucsa.275360	Cucumber (Gy14) v1	cgywmB507
Cla003257	CmoCh12G006610	Cucurbita moschata (Rifu)	cmowmB131
Cla003257	Lsi02G017380	Bottle gourd (USVL1VR-Ls)	lsiwmB170
Cla003257	CsGy5G016370	Cucumber (Gy14) v2	cgybwmB339
Cla003257	MELO3C002923.2	Melon (DHL92) v3.6.1	medwmB001
Cla003257	CsaV3_5G025600	Cucumber (Chinese Long) v3	cucwmB387
Cla003257	Bhi06G000661	Wax gourd	wgowmB117

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla003257	Cucurbita pepo (Zucchini)	cpewmB753