MELO3C002800.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C002800.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	50S ribosomal protein L33-like
Location	chr12 : 20446772 .. 20448413 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAACCCTAAAAACCATACCCCGTATTCTTCCCATTTCTTCCACTAATTCCCTCCGTCTACCCTTGCCGCCGATCAGCTGCGCTGCCTTCACGCCGTCGCCGCCGGTCAGCTTCAACCCTTTACTTTTTCACTCTCTTTTGAATATATATATGTGTGCGTGTGTGTGTGTGTGTGTGTAAATATAGAGAACATGAAGTATCCTCGATGTATCCGTATCTCATAACTGTTTTGCTTCATAGCTGGTTCATAATGTGCCTCTCTCTTTTTGACGGTATTGTAAGAAATCACTCTAATAGGTTTCCACCTGTTTGATCTGCTAAAATGGATGGCTTATTTGTTGTTTTCCTGCTCCTAATAATTGGGTCGAATTATGAGTTTAATATCTGAACTTTCTGCTTTGTGACTATTTGGTACATGAACTTTTAATGGAAGTGTTCGATAAATCTCTGAATGGTTGAAAGGTGTTAATGTTCAATTTTGTGTCTAGGTCTCATAGTTTTCAATTTTGATCGAAATATTCAATATCCTTTAAATTTAGGGACGCGCTAAACCCAGTTTTGAAAGTTTAGGGTCTCGTCGGACATAAAATTCAATTCTATATCATCTAGAATAGTTAATTTGAAAATGTTCAAATATGTCAAAGGCTTATTGAACACATAATTGAATTCATTAGACACTTCTATAGTTTAGACACAAAATTGAAAATTTAAGTTCCCATTATACACCTGTTGTAAAAAAACTTGAAAAAGATTGGTGATTTAGCTATATTTGAGTGAGAAAAACCTGTGTTAAAATCCATATAGTTTCATTTAATTCAGCATCTGCACATTTTCATTGCAAATAGCTGCTTGAATATGTTTTCGTATCCTTGAATTTCAATGTATTCATATTCTTTCAGAGACGCTCTGTTGTTTCATCTTGTATTTGGGGTTTTATTATAATATTTGTTGTAATCTTTGGATATTTCATTTATCAATGAAATAGTTTCTTATGTATATATTTTTATAGTATAGCATGTCAAGAACTAGCTTTGAAAATTACTGGATAAGTTAATTTTGTTTTTCTCTTTTTGGTGTTAGGAAATGGGTGACAAGAAAAAGAAAGCTACCATGTTCATCCGACTTGTATCAGCTGCGGGGACTGGATTCTTTTATGTTAAAAGAAAGCCAACCAAAATTACAGAGAAGCTCGAGTTCCGAAAATACGATCCTCGGGTCAATCGACATGTTTTGTTTACGGAAGCTAAAATGAAATGAAAGAAGAGAGGAATAAAAATCAATTATCCTTTCAACCTGGACCTATTCTTCTTTTGGTCCATAGGTTTTGGAGCTTTGCAATTAGTCTTTTTTCTTCTCCATTTTAGACTGATGTCATATTTGCTAGTTTTTTTCCCATGACTCATCTTCAGCCTTTGTGGAACAGTATTTTTGTACATCAACTTCTATGGCCACGAATTGTTTGCCTCTTGATTTCTTGTGGTCAAATGTGTTGAGATAAATTATAAGATATAACTTGAGTTACTAAGCTTGATGATTGCATCTTAGAGTTGCGGGGATGTTTGGTGGCTTGTAATGTGATTGGATCTAATGTAATAAATGCAAAATCCTTATTTGGATCTTATTTGGATTTAGTGTTTTGAATA

mRNA sequence

AAACCCTAAAAACCATACCCCGTATTCTTCCCATTTCTTCCACTAATTCCCTCCGTCTACCCTTGCCGCCGATCAGCTGCGCTGCCTTCACGCCGTCGCCGCCGGAAATGGGTGACAAGAAAAAGAAAGCTACCATGTTCATCCGACTTGTATCAGCTGCGGGGACTGGATTCTTTTATGTTAAAAGAAAGCCAACCAAAATTACAGAGAAGCTCGAGTTCCGAAAATACGATCCTCGGGTCAATCGACATGTTTTGTTTACGGAAGCTAAAATGAAATGAAAGAAGAGAGGAATAAAAATCAATTATCCTTTCAACCTGGACCTATTCTTCTTTTGGTCCATAGGTTTTGGAGCTTTGCAATTAGTCTTTTTTCTTCTCCATTTTAGACTGATGTCATATTTGCTAGTTTTTTTCCCATGACTCATCTTCAGCCTTTGTGGAACAGTATTTTTGTACATCAACTTCTATGGCCACGAATTGTTTGCCTCTTGATTTCTTGTGGTCAAATGTGTTGAGATAAATTATAAGATATAACTTGAGTTACTAAGCTTGATGATTGCATCTTAGAGTTGCGGGGATGTTTGGTGGCTTGTAATGTGATTGGATCTAATGTAATAAATGCAAAATCCTTATTTGGATCTTATTTGGATTTAGTGTTTTGAATA

Coding sequence (CDS)

ACCCTAAAAACCATACCCCGTATTCTTCCCATTTCTTCCACTAATTCCCTCCGTCTACCCTTGCCGCCGATCAGCTGCGCTGCCTTCACGCCGTCGCCGCCGGAAATGGGTGACAAGAAAAAGAAAGCTACCATGTTCATCCGACTTGTATCAGCTGCGGGGACTGGATTCTTTTATGTTAAAAGAAAGCCAACCAAAATTACAGAGAAGCTCGAGTTCCGAAAATACGATCCTCGGGTCAATCGACATGTTTTGTTTACGGAAGCTAAAATGAAATGA

Protein sequence

TLKTIPRILPISSTNSLRLPLPPISCAAFTPSPPEMGDKKKKATMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK

Homology

[Close]

BLAST of MELO3C002800.2 vs. NCBI nr
Match: XP_004135554.1 (PREDICTED: 54S ribosomal protein L39, mitochondrial-like [Cucumis sativus] >XP_008445095.1 PREDICTED: 50S ribosomal protein L33-like [Cucumis melo] >XP_022138424.1 uncharacterized protein LOC111009599 [Momordica charantia] >XP_022958839.1 uncharacterized protein LOC111459991 [Cucurbita moschata] >XP_023006427.1 uncharacterized protein LOC111499157 [Cucurbita maxima] >XP_023548396.1 uncharacterized protein LOC111807061 [Cucurbita pepo subsp. pepo] >KGN65933.1 hypothetical protein Csa_1G538800 [Cucumis sativus])

HSP 1 Score: 117.5 bits (293), Expect = 2.4e-23
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 0


Query: 36 MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK 93
          MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK
Sbjct: 1  MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK 57

[Close]

BLAST of MELO3C002800.2 vs. NCBI nr
Match: XP_022137876.1 (uncharacterized protein LOC111009198 [Momordica charantia])

HSP 1 Score: 116.7 bits (291), Expect = 4.2e-23
Identity = 56/57 (98.25%), Postives = 57/57 (100.00%), Query Frame = 0


Query: 36 MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK 93
          MGDKKKKATMFIRLVSAAGTGFFYVKRKPTK+TEKLEFRKYDPRVNRHVLFTEAKMK
Sbjct: 1  MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKLTEKLEFRKYDPRVNRHVLFTEAKMK 57

[Close]

BLAST of MELO3C002800.2 vs. NCBI nr
Match: XP_007223555.1 (uncharacterized protein LOC18791548 [Prunus persica] >XP_008223087.1 PREDICTED: 50S ribosomal protein L33 [Prunus mume] >XP_021808617.1 uncharacterized protein LOC110752307 [Prunus avium] >ONI28500.1 hypothetical protein PRUPE_1G144200 [Prunus persica] >ONI28501.1 hypothetical protein PRUPE_1G144200 [Prunus persica])

HSP 1 Score: 114.0 bits (284), Expect = 2.7e-22
Identity = 54/57 (94.74%), Postives = 57/57 (100.00%), Query Frame = 0


Query: 36 MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK 93
          MGDKKKKAT+FIRLVSAAGTGFFYVKRKPTK+TEKLEFRK+DPRVNRHVLFTEAKMK
Sbjct: 1  MGDKKKKATVFIRLVSAAGTGFFYVKRKPTKVTEKLEFRKFDPRVNRHVLFTEAKMK 57

[Close]

BLAST of MELO3C002800.2 vs. NCBI nr
Match: XP_004296781.1 (PREDICTED: 54S ribosomal protein L39, mitochondrial [Fragaria vesca subsp. vesca])

HSP 1 Score: 109.4 bits (272), Expect = 6.7e-21
Identity = 51/57 (89.47%), Postives = 56/57 (98.25%), Query Frame = 0


Query: 36 MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK 93
          MGDKKKKAT+FIRLVSAAGTGFFYVK+KP+++ EKLEFRKYDPRVNRHVLFTEAKMK
Sbjct: 1  MGDKKKKATLFIRLVSAAGTGFFYVKKKPSRMVEKLEFRKYDPRVNRHVLFTEAKMK 57

[Close]

BLAST of MELO3C002800.2 vs. NCBI nr
Match: OIV98733.1 (hypothetical protein TanjilG_24904 [Lupinus angustifolius])

HSP 1 Score: 109.4 bits (272), Expect = 6.7e-21
Identity = 51/57 (89.47%), Postives = 55/57 (96.49%), Query Frame = 0


Query: 36 MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK 93
          MGDKKKKA MF++LVSAAGTGFFYVKRKP ++TEKLEFRKYDPRVNRHVLFTEAKMK
Sbjct: 1  MGDKKKKAQMFVKLVSAAGTGFFYVKRKPRQVTEKLEFRKYDPRVNRHVLFTEAKMK 57

[Close]

BLAST of MELO3C002800.2 vs. TAIR10
Match: AT3G06320.1 (Ribosomal protein L33 family protein)

HSP 1 Score: 99.4 bits (246), Expect = 1.2e-21
Identity = 50/58 (86.21%), Postives = 52/58 (89.66%), Query Frame = 0


Query: 36 MGDKKKKATMFIRLVSAAGTGFFYVKRKPTK-ITEKLEFRKYDPRVNRHVLFTEAKMK 93
          MGDK+KK  MFIRLVSAAGTGFFYVKRK TK + EKLEFRKYDPRVNRHVLFTE KMK
Sbjct: 1  MGDKRKKTFMFIRLVSAAGTGFFYVKRKSTKGLLEKLEFRKYDPRVNRHVLFTEQKMK 58

[Close]

BLAST of MELO3C002800.2 vs. TAIR10
Match: AT5G18790.1 (Ribosomal protein L33 family protein)

HSP 1 Score: 99.4 bits (246), Expect = 1.2e-21
Identity = 50/58 (86.21%), Postives = 52/58 (89.66%), Query Frame = 0


Query: 36 MGDKKKKATMFIRLVSAAGTGFFYVKRKPTK-ITEKLEFRKYDPRVNRHVLFTEAKMK 93
          MGDK+KK  MFIRLVSAAGTGFFYVKRK TK + EKLEFRKYDPRVNRHVLFTE KMK
Sbjct: 1  MGDKRKKTFMFIRLVSAAGTGFFYVKRKSTKGLLEKLEFRKYDPRVNRHVLFTEQKMK 58

[Close]

BLAST of MELO3C002800.2 vs. Swiss-Prot
Match: sp|Q2W1A2|RL33_MAGSA (50S ribosomal protein L33 OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) OX=342108 GN=rpmG PE=3 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 3.9e-12
Identity = 36/53 (67.92%), Postives = 42/53 (79.25%), Query Frame = 0


Query: 41 KKATMFIRLVSAAGTGFFYV-KRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK 93
          K AT+ I+L+S AGTGFFYV K+ P K TEKLEFRKYDP V +HV F EAK+K
Sbjct: 3  KPATILIKLLSTAGTGFFYVAKKNPRKTTEKLEFRKYDPVVRKHVQFKEAKIK 55

[Close]

BLAST of MELO3C002800.2 vs. Swiss-Prot
Match: sp|B6IN38|RL33_RHOCS (50S ribosomal protein L33 OS=Rhodospirillum centenum (strain ATCC 51521 / SW) OX=414684 GN=rpmG PE=3 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 6.6e-12
Identity = 35/53 (66.04%), Postives = 43/53 (81.13%), Query Frame = 0


Query: 41 KKATMFIRLVSAAGTGFFYVKRK-PTKITEKLEFRKYDPRVNRHVLFTEAKMK 93
          K+ T+ I+LVS+A TGFFYVK+K P K TEKLEF+KYDP   +HV+F EAKMK
Sbjct: 3  KQNTVLIKLVSSADTGFFYVKKKNPRKTTEKLEFKKYDPVARKHVVFKEAKMK 55

[Close]

BLAST of MELO3C002800.2 vs. Swiss-Prot
Match: sp|B3CRY6|RL33_ORITI (50S ribosomal protein L33 OS=Orientia tsutsugamushi (strain Ikeda) OX=334380 GN=rpmG PE=3 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 7.3e-11
Identity = 33/54 (61.11%), Postives = 42/54 (77.78%), Query Frame = 0


Query: 40 KKKATMFIRLVSAAGTGFFYVK-RKPTKITEKLEFRKYDPRVNRHVLFTEAKMK 93
          +KK  + ++LVS+AGTG F+VK R P   TEKL FRKYDP+V +HV FTEAK+K
Sbjct: 3  RKKKKVLVKLVSSAGTGVFWVKQRNPKTQTEKLSFRKYDPKVRKHVQFTEAKIK 56

[Close]

BLAST of MELO3C002800.2 vs. Swiss-Prot
Match: sp|A8GY80|RL33_RICB8 (50S ribosomal protein L33 OS=Rickettsia bellii (strain OSU 85-389) OX=391896 GN=rpmG PE=3 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 7.3e-11
Identity = 34/54 (62.96%), Postives = 39/54 (72.22%), Query Frame = 0


Query: 40 KKKATMFIRLVSAAGTGFFYV-KRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK 93
          KK   + +RLVS AGTGFF V KR P   TEKL FRKYDP+V +HVLF E K+K
Sbjct: 3  KKNKNILVRLVSTAGTGFFLVKKRNPKTQTEKLSFRKYDPKVRKHVLFKEEKIK 56

[Close]

BLAST of MELO3C002800.2 vs. Swiss-Prot
Match: sp|Q1RGQ4|RL33_RICBR (50S ribosomal protein L33 OS=Rickettsia bellii (strain RML369-C) OX=336407 GN=rpmG PE=3 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 7.3e-11
Identity = 34/54 (62.96%), Postives = 39/54 (72.22%), Query Frame = 0


Query: 40 KKKATMFIRLVSAAGTGFFYV-KRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK 93
          KK   + +RLVS AGTGFF V KR P   TEKL FRKYDP+V +HVLF E K+K
Sbjct: 3  KKNKNILVRLVSTAGTGFFLVKKRNPKTQTEKLSFRKYDPKVRKHVLFKEEKIK 56

[Close]

BLAST of MELO3C002800.2 vs. TrEMBL
Match: tr|A0A1S3BBV4|A0A1S3BBV4_CUCME (50S ribosomal protein L33-like OS=Cucumis melo OX=3656 GN=LOC103488236 PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 1.6e-23
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 0


Query: 36 MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK 93
          MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK
Sbjct: 1  MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK 57

[Close]

BLAST of MELO3C002800.2 vs. TrEMBL
Match: tr|A0A0A0LVW9|A0A0A0LVW9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G538800 PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 1.6e-23
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 0


Query: 36 MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK 93
          MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK
Sbjct: 1  MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK 57

[Close]

BLAST of MELO3C002800.2 vs. TrEMBL
Match: tr|M5XFP4|M5XFP4_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G144200 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 1.8e-22
Identity = 54/57 (94.74%), Postives = 57/57 (100.00%), Query Frame = 0


Query: 36 MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK 93
          MGDKKKKAT+FIRLVSAAGTGFFYVKRKPTK+TEKLEFRK+DPRVNRHVLFTEAKMK
Sbjct: 1  MGDKKKKATVFIRLVSAAGTGFFYVKRKPTKVTEKLEFRKFDPRVNRHVLFTEAKMK 57

[Close]

BLAST of MELO3C002800.2 vs. TrEMBL
Match: tr|A0A2P5FX58|A0A2P5FX58_9ROSA (Ribosomal protein OS=Trema orientalis OX=63057 GN=TorRG33x02_021540 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 4.4e-21
Identity = 51/58 (87.93%), Postives = 57/58 (98.28%), Query Frame = 0


Query: 35 EMGDKKKKATMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK 93
          EMGDKKKKAT+FIRLVSAAGTGFFYVK+KP+++ EKLEFRK+DPRVNRHVLFTEAKMK
Sbjct: 9  EMGDKKKKATIFIRLVSAAGTGFFYVKKKPSRMVEKLEFRKFDPRVNRHVLFTEAKMK 66

[Close]

BLAST of MELO3C002800.2 vs. TrEMBL
Match: tr|A0A2P5E3Z0|A0A2P5E3Z0_PARAD (Ribosomal protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_007080 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 4.4e-21
Identity = 51/58 (87.93%), Postives = 57/58 (98.28%), Query Frame = 0


Query: 35 EMGDKKKKATMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK 93
          EMGDKKKKAT+FIRLVSAAGTGFFYVK+KP+++ EKLEFRK+DPRVNRHVLFTEAKMK
Sbjct: 9  EMGDKKKKATIFIRLVSAAGTGFFYVKKKPSRMVEKLEFRKFDPRVNRHVLFTEAKMK 66

The following BLAST results are available for this feature:

BLAST of MELO3C002800.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004135554.1	2.4e-23	100.00	PREDICTED: 54S ribosomal protein L39, mitochondrial-like [Cucumis sativus] >XP_0...	[more]
XP_022137876.1	4.2e-23	98.25	uncharacterized protein LOC111009198 [Momordica charantia]	[more]
XP_007223555.1	2.7e-22	94.74	uncharacterized protein LOC18791548 [Prunus persica] >XP_008223087.1 PREDICTED: ...	[more]
XP_004296781.1	6.7e-21	89.47	PREDICTED: 54S ribosomal protein L39, mitochondrial [Fragaria vesca subsp. vesca...	[more]
OIV98733.1	6.7e-21	89.47	hypothetical protein TanjilG_24904 [Lupinus angustifolius]	[more]

BLAST of MELO3C002800.2 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G06320.1	1.2e-21	86.21	Ribosomal protein L33 family protein	[more]
AT5G18790.1	1.2e-21	86.21	Ribosomal protein L33 family protein	[more]

BLAST of MELO3C002800.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q2W1A2\|RL33_MAGSA	3.9e-12	67.92	50S ribosomal protein L33 OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 70...	[more]
sp\|B6IN38\|RL33_RHOCS	6.6e-12	66.04	50S ribosomal protein L33 OS=Rhodospirillum centenum (strain ATCC 51521 / SW) OX...	[more]
sp\|B3CRY6\|RL33_ORITI	7.3e-11	61.11	50S ribosomal protein L33 OS=Orientia tsutsugamushi (strain Ikeda) OX=334380 GN=...	[more]
sp\|A8GY80\|RL33_RICB8	7.3e-11	62.96	50S ribosomal protein L33 OS=Rickettsia bellii (strain OSU 85-389) OX=391896 GN=...	[more]
sp\|Q1RGQ4\|RL33_RICBR	7.3e-11	62.96	50S ribosomal protein L33 OS=Rickettsia bellii (strain RML369-C) OX=336407 GN=rp...	[more]

BLAST of MELO3C002800.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BBV4\|A0A1S3BBV4_CUCME	1.6e-23	100.00	50S ribosomal protein L33-like OS=Cucumis melo OX=3656 GN=LOC103488236 PE=4 SV=1	[more]
tr\|A0A0A0LVW9\|A0A0A0LVW9_CUCSA	1.6e-23	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G538800 PE=4 SV=1	[more]
tr\|M5XFP4\|M5XFP4_PRUPE	1.8e-22	94.74	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G144200 PE=4 SV=1	[more]
tr\|A0A2P5FX58\|A0A2P5FX58_9ROSA	4.4e-21	87.93	Ribosomal protein OS=Trema orientalis OX=63057 GN=TorRG33x02_021540 PE=4 SV=1	[more]
tr\|A0A2P5E3Z0\|A0A2P5E3Z0_PARAD	4.4e-21	87.93	Ribosomal protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_007080 PE=4 SV=...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005840	ribosome
GO:0005622	intracellular

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

Vocabulary: **INTERPRO**
Term	Definition
IPR011332	Ribosomal_zn-bd
IPR001705	Ribosomal_L33
IPR038584	L33_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
biological_process	GO:0042254	ribosome biogenesis
cellular_component	GO:0005622	intracellular
cellular_component	GO:0005840	ribosome
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005762	mitochondrial large ribosomal subunit
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C002800.2.1	MELO3C002800.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR038584	Ribosomal protein L33 superfamily	GENE3D	G3DSA:2.20.28.120		coord: 37..92 e-value: 3.7E-25 score: 89.4
IPR001705	Ribosomal protein L33	PFAM	PF00471	Ribosomal_L33	coord: 47..90 e-value: 3.3E-10 score: 40.1
IPR001705	Ribosomal protein L33	TIGRFAM	TIGR01023	TIGR01023	coord: 39..92 e-value: 3.9E-17 score: 60.3
None	No IPR available	PANTHER	PTHR15238	FAMILY NOT NAMED	coord: 36..92
IPR011332	Zinc-binding ribosomal protein	SUPERFAMILY	SSF57829	Zn-binding ribosomal proteins	coord: 39..90

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C002800.2	Csa1G538800	Cucumber (Chinese Long) v2	cumedB013
MELO3C002800.2	CSPI01G25090	Wild cucumber (PI 183967)	cpimedB015
MELO3C002800.2	Cucsa.167180	Cucumber (Gy14) v1	cgymedB289
MELO3C002800.2	Lsi02G009360	Bottle gourd (USVL1VR-Ls)	lsimedB189
MELO3C002800.2	CsGy1G024510	Cucumber (Gy14) v2	cgybmedB012
MELO3C002800.2	Cla019531	Watermelon (97103) v1	medwmB144
MELO3C002800.2	ClCG03G006340	Watermelon (Charleston Gray)	medwcgB142
MELO3C002800.2	Cla97C03G057610	Watermelon (97103) v2	medwmbB143
MELO3C002800.2	Bhi08G000995	Wax gourd	medwgoB187
MELO3C002800.2	CsaV3_1G037420	Cucumber (Chinese Long) v3	cucmedB012

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C002800.2	Cucumber (Gy14) v1	cgymedB291
MELO3C002800.2	Cucurbita maxima (Rimu)	cmamedB213
MELO3C002800.2	Cucurbita maxima (Rimu)	cmamedB423
MELO3C002800.2	Cucurbita moschata (Rifu)	cmomedB201
MELO3C002800.2	Cucurbita moschata (Rifu)	cmomedB408
MELO3C002800.2	Cucurbita pepo (Zucchini)	cpemedB031
MELO3C002800.2	Cucurbita pepo (Zucchini)	cpemedB559
MELO3C002800.2	Silver-seed gourd	carmedB0217
MELO3C002800.2	Silver-seed gourd	carmedB0432