CSPI01G25090 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI01G25090
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	50S ribosomal protein L33
Location	Chr1 : 20522248 .. 20522418 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTGACAAGAAAAAGAAAGCTACTATGTTCATCCGACTTGTATCAGCTGCTGGGACTGGATTCTTCTATGTTAAAAGAAAGCCAACCAAAATTACAGAGAAGCTCGAGTTCCGAAAATATGATCCTCGGGTCAATCGACATGTTTTGTTTACGGAAGCGAAAATGAAA

mRNA sequence

ATGGGTGACAAGAAAAAGAAAGCTACTATGTTCATCCGACTTGTATCAGCTGCTGGGACTGGATTCTTCTATGTTAAAAGAAAGCCAACCAAAATTACAGAGAAGCTCGAGTTCCGAAAATATGATCCTCGGGTCAATCGACATGTTTTGTTTACGGAAGCGAAAATGAAA

Coding sequence (CDS)

ATGGGTGACAAGAAAAAGAAAGCTACTATGTTCATCCGACTTGTATCAGCTGCTGGGACTGGATTCTTCTATGTTAAAAGAAAGCCAACCAAAATTACAGAGAAGCTCGAGTTCCGAAAATATGATCCTCGGGTCAATCGACATGTTTTGTTTACGGAAGCGAAAATGAAA

Homology

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BLAST of CSPI01G25090 vs. Swiss-Prot
Match: RL33_MAGSA (50S ribosomal protein L33 OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=rpmG PE=3 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 3.1e-12
Identity = 36/53 (67.92%), Postives = 42/53 (79.25%), Query Frame = 1


Query: 6  KKATMFIRLVSAAGTGFFYV-KRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK 58
          K AT+ I+L+S AGTGFFYV K+ P K TEKLEFRKYDP V +HV F EAK+K
Sbjct: 3  KPATILIKLLSTAGTGFFYVAKKNPRKTTEKLEFRKYDPVVRKHVQFKEAKIK 55

[Close]

BLAST of CSPI01G25090 vs. Swiss-Prot
Match: RL33_RHOCS (50S ribosomal protein L33 OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=rpmG PE=3 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 5.2e-12
Identity = 35/53 (66.04%), Postives = 43/53 (81.13%), Query Frame = 1


Query: 6  KKATMFIRLVSAAGTGFFYVKRK-PTKITEKLEFRKYDPRVNRHVLFTEAKMK 58
          K+ T+ I+LVS+A TGFFYVK+K P K TEKLEF+KYDP   +HV+F EAKMK
Sbjct: 3  KQNTVLIKLVSSADTGFFYVKKKNPRKTTEKLEFKKYDPVARKHVVFKEAKMK 55

[Close]

BLAST of CSPI01G25090 vs. Swiss-Prot
Match: RL33_RICB8 (50S ribosomal protein L33 OS=Rickettsia bellii (strain OSU 85-389) GN=rpmG PE=3 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 5.8e-11
Identity = 34/54 (62.96%), Postives = 39/54 (72.22%), Query Frame = 1


Query: 5  KKKATMFIRLVSAAGTGFFYVK-RKPTKITEKLEFRKYDPRVNRHVLFTEAKMK 58
          KK   + +RLVS AGTGFF VK R P   TEKL FRKYDP+V +HVLF E K+K
Sbjct: 3  KKNKNILVRLVSTAGTGFFLVKKRNPKTQTEKLSFRKYDPKVRKHVLFKEEKIK 56

[Close]

BLAST of CSPI01G25090 vs. Swiss-Prot
Match: RL33_RICBR (50S ribosomal protein L33 OS=Rickettsia bellii (strain RML369-C) GN=rpmG PE=3 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 5.8e-11
Identity = 34/54 (62.96%), Postives = 39/54 (72.22%), Query Frame = 1


Query: 5  KKKATMFIRLVSAAGTGFFYVK-RKPTKITEKLEFRKYDPRVNRHVLFTEAKMK 58
          KK   + +RLVS AGTGFF VK R P   TEKL FRKYDP+V +HVLF E K+K
Sbjct: 3  KKNKNILVRLVSTAGTGFFLVKKRNPKTQTEKLSFRKYDPKVRKHVLFKEEKIK 56

[Close]

BLAST of CSPI01G25090 vs. Swiss-Prot
Match: RL33_ORITI (50S ribosomal protein L33 OS=Orientia tsutsugamushi (strain Ikeda) GN=rpmG PE=3 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 5.8e-11
Identity = 33/54 (61.11%), Postives = 42/54 (77.78%), Query Frame = 1


Query: 5  KKKATMFIRLVSAAGTGFFYVK-RKPTKITEKLEFRKYDPRVNRHVLFTEAKMK 58
          +KK  + ++LVS+AGTG F+VK R P   TEKL FRKYDP+V +HV FTEAK+K
Sbjct: 3  RKKKKVLVKLVSSAGTGVFWVKQRNPKTQTEKLSFRKYDPKVRKHVQFTEAKIK 56

[Close]

BLAST of CSPI01G25090 vs. TrEMBL
Match: A0A0A0LVW9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G538800 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 7.1e-24
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 1


Query: 1  MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK 58
          MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK
Sbjct: 1  MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK 57

[Close]

BLAST of CSPI01G25090 vs. TrEMBL
Match: M5XFP4_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa014533mg PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 7.8e-23
Identity = 54/57 (94.74%), Postives = 57/57 (100.00%), Query Frame = 1


Query: 1  MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK 58
          MGDKKKKAT+FIRLVSAAGTGFFYVKRKPTK+TEKLEFRK+DPRVNRHVLFTEAKMK
Sbjct: 1  MGDKKKKATVFIRLVSAAGTGFFYVKRKPTKVTEKLEFRKFDPRVNRHVLFTEAKMK 57

[Close]

BLAST of CSPI01G25090 vs. TrEMBL
Match: A0A0B2SLG3_GLYSO (50S ribosomal protein L33 OS=Glycine soja GN=glysoja_039671 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 4.3e-21
Identity = 51/57 (89.47%), Postives = 54/57 (94.74%), Query Frame = 1


Query: 1  MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK 58
          MGDKKKKA MF++LVSAAGTGFFYVKRKP + TEKLEFRKYDPRVNRHVLFTEAKMK
Sbjct: 1  MGDKKKKAQMFVKLVSAAGTGFFYVKRKPRQFTEKLEFRKYDPRVNRHVLFTEAKMK 57

[Close]

BLAST of CSPI01G25090 vs. TrEMBL
Match: A0A0R0GCF5_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_14G127700 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 4.3e-21
Identity = 51/57 (89.47%), Postives = 54/57 (94.74%), Query Frame = 1


Query: 1  MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK 58
          MGDKKKKA MF++LVSAAGTGFFYVKRKP + TEKLEFRKYDPRVNRHVLFTEAKMK
Sbjct: 31 MGDKKKKAQMFVKLVSAAGTGFFYVKRKPRQFTEKLEFRKYDPRVNRHVLFTEAKMK 87

[Close]

BLAST of CSPI01G25090 vs. TrEMBL
Match: A0A151R6A5_CAJCA (50S ribosomal protein L33 OS=Cajanus cajan GN=KK1_040590 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 4.3e-21
Identity = 51/57 (89.47%), Postives = 54/57 (94.74%), Query Frame = 1


Query: 1  MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK 58
          MGDKKKKA MF++LVSAAGTGFFYVKRKP + TEKLEFRKYDPRVNRHVLFTEAKMK
Sbjct: 1  MGDKKKKAQMFVKLVSAAGTGFFYVKRKPRQFTEKLEFRKYDPRVNRHVLFTEAKMK 57

[Close]

BLAST of CSPI01G25090 vs. TAIR10
Match: AT3G06320.1 (AT3G06320.1 Ribosomal protein L33 family protein)

HSP 1 Score: 99.0 bits (245), Expect = 1.0e-21
Identity = 50/58 (86.21%), Postives = 52/58 (89.66%), Query Frame = 1


Query: 1  MGDKKKKATMFIRLVSAAGTGFFYVKRKPTK-ITEKLEFRKYDPRVNRHVLFTEAKMK 58
          MGDK+KK  MFIRLVSAAGTGFFYVKRK TK + EKLEFRKYDPRVNRHVLFTE KMK
Sbjct: 1  MGDKRKKTFMFIRLVSAAGTGFFYVKRKSTKGLLEKLEFRKYDPRVNRHVLFTEQKMK 58

[Close]

BLAST of CSPI01G25090 vs. TAIR10
Match: AT5G18790.1 (AT5G18790.1 Ribosomal protein L33 family protein)

HSP 1 Score: 99.0 bits (245), Expect = 1.0e-21
Identity = 50/58 (86.21%), Postives = 52/58 (89.66%), Query Frame = 1


Query: 1  MGDKKKKATMFIRLVSAAGTGFFYVKRKPTK-ITEKLEFRKYDPRVNRHVLFTEAKMK 58
          MGDK+KK  MFIRLVSAAGTGFFYVKRK TK + EKLEFRKYDPRVNRHVLFTE KMK
Sbjct: 1  MGDKRKKTFMFIRLVSAAGTGFFYVKRKSTKGLLEKLEFRKYDPRVNRHVLFTEQKMK 58

[Close]

BLAST of CSPI01G25090 vs. NCBI nr
Match: gi|449435542|ref|XP_004135554.1| (PREDICTED: 54S ribosomal protein L39, mitochondrial-like [Cucumis sativus])

HSP 1 Score: 117.1 bits (292), Expect = 1.0e-23
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 1


Query: 1  MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK 58
          MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK
Sbjct: 1  MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK 57

[Close]

BLAST of CSPI01G25090 vs. NCBI nr
Match: gi|596194192|ref|XP_007223555.1| (hypothetical protein PRUPE_ppa014533mg [Prunus persica])

HSP 1 Score: 113.6 bits (283), Expect = 1.1e-22
Identity = 54/57 (94.74%), Postives = 57/57 (100.00%), Query Frame = 1


Query: 1  MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK 58
          MGDKKKKAT+FIRLVSAAGTGFFYVKRKPTK+TEKLEFRK+DPRVNRHVLFTEAKMK
Sbjct: 1  MGDKKKKATVFIRLVSAAGTGFFYVKRKPTKVTEKLEFRKFDPRVNRHVLFTEAKMK 57

[Close]

BLAST of CSPI01G25090 vs. NCBI nr
Match: gi|470121449|ref|XP_004296781.1| (PREDICTED: 54S ribosomal protein L39, mitochondrial [Fragaria vesca subsp. vesca])

HSP 1 Score: 109.0 bits (271), Expect = 2.8e-21
Identity = 51/57 (89.47%), Postives = 56/57 (98.25%), Query Frame = 1


Query: 1  MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK 58
          MGDKKKKAT+FIRLVSAAGTGFFYVK+KP+++ EKLEFRKYDPRVNRHVLFTEAKMK
Sbjct: 1  MGDKKKKATLFIRLVSAAGTGFFYVKKKPSRMVEKLEFRKYDPRVNRHVLFTEAKMK 57

[Close]

BLAST of CSPI01G25090 vs. NCBI nr
Match: gi|356563842|ref|XP_003550167.1| (PREDICTED: 50S ribosomal protein L33-like [Glycine max])

HSP 1 Score: 107.8 bits (268), Expect = 6.2e-21
Identity = 51/57 (89.47%), Postives = 54/57 (94.74%), Query Frame = 1


Query: 1  MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK 58
          MGDKKKKA MF++LVSAAGTGFFYVKRKP + TEKLEFRKYDPRVNRHVLFTEAKMK
Sbjct: 1  MGDKKKKAQMFVKLVSAAGTGFFYVKRKPRQFTEKLEFRKYDPRVNRHVLFTEAKMK 57

[Close]

BLAST of CSPI01G25090 vs. NCBI nr
Match: gi|955365372|ref|XP_014622782.1| (PREDICTED: 50S ribosomal protein L33-like isoform X1 [Glycine max])

HSP 1 Score: 107.8 bits (268), Expect = 6.2e-21
Identity = 51/57 (89.47%), Postives = 54/57 (94.74%), Query Frame = 1


Query: 1  MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK 58
          MGDKKKKA MF++LVSAAGTGFFYVKRKP + TEKLEFRKYDPRVNRHVLFTEAKMK
Sbjct: 31 MGDKKKKAQMFVKLVSAAGTGFFYVKRKPRQFTEKLEFRKYDPRVNRHVLFTEAKMK 87

The following BLAST results are available for this feature:

BLAST of CSPI01G25090 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RL33_MAGSA	3.1e-12	67.92	50S ribosomal protein L33 OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 70...	[more]
RL33_RHOCS	5.2e-12	66.04	50S ribosomal protein L33 OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN...	[more]
RL33_RICB8	5.8e-11	62.96	50S ribosomal protein L33 OS=Rickettsia bellii (strain OSU 85-389) GN=rpmG PE=3 ...	[more]
RL33_RICBR	5.8e-11	62.96	50S ribosomal protein L33 OS=Rickettsia bellii (strain RML369-C) GN=rpmG PE=3 SV...	[more]
RL33_ORITI	5.8e-11	61.11	50S ribosomal protein L33 OS=Orientia tsutsugamushi (strain Ikeda) GN=rpmG PE=3 ...	[more]

BLAST of CSPI01G25090 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LVW9_CUCSA	7.1e-24	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G538800 PE=4 SV=1	[more]
M5XFP4_PRUPE	7.8e-23	94.74	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa014533mg PE=4 SV=1	[more]
A0A0B2SLG3_GLYSO	4.3e-21	89.47	50S ribosomal protein L33 OS=Glycine soja GN=glysoja_039671 PE=4 SV=1	[more]
A0A0R0GCF5_SOYBN	4.3e-21	89.47	Uncharacterized protein OS=Glycine max GN=GLYMA_14G127700 PE=4 SV=1	[more]
A0A151R6A5_CAJCA	4.3e-21	89.47	50S ribosomal protein L33 OS=Cajanus cajan GN=KK1_040590 PE=4 SV=1	[more]

BLAST of CSPI01G25090 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G06320.1	1.0e-21	86.21	Ribosomal protein L33 family protein	[more]
AT5G18790.1	1.0e-21	86.21	Ribosomal protein L33 family protein	[more]

BLAST of CSPI01G25090 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449435542\|ref\|XP_004135554.1\|	1.0e-23	100.00	PREDICTED: 54S ribosomal protein L39, mitochondrial-like [Cucumis sativus]	[more]
gi\|596194192\|ref\|XP_007223555.1\|	1.1e-22	94.74	hypothetical protein PRUPE_ppa014533mg [Prunus persica]	[more]
gi\|470121449\|ref\|XP_004296781.1\|	2.8e-21	89.47	PREDICTED: 54S ribosomal protein L39, mitochondrial [Fragaria vesca subsp. vesca...	[more]
gi\|356563842\|ref\|XP_003550167.1\|	6.2e-21	89.47	PREDICTED: 50S ribosomal protein L33-like [Glycine max]	[more]
gi\|955365372\|ref\|XP_014622782.1\|	6.2e-21	89.47	PREDICTED: 50S ribosomal protein L33-like isoform X1 [Glycine max]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001705	Ribosomal_L33
IPR011332	Ribosomal_zn-bd

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005622	intracellular
cellular_component	GO:0005762	mitochondrial large ribosomal subunit
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI01G25090.1	CSPI01G25090.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001705	Ribosomal protein L33	PFAM	PF00471	Ribosomal_L33	coord: 12..55 score: 5.1
IPR001705	Ribosomal protein L33	TIGRFAMs	TIGR01023	TIGR01023	coord: 4..57 score: 7.8
IPR011332	Zinc-binding ribosomal protein	unknown	SSF57829	Zn-binding ribosomal proteins	coord: 4..55 score: 4.76
None	No IPR available	PANTHER	PTHR15238	FAMILY NOT NAMED	coord: 1..57 score: 4.6
None	No IPR available	PANTHER	PTHR15238:SF10	SUBFAMILY NOT NAMED	coord: 1..57 score: 4.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI01G25090	Cla019531	Watermelon (97103) v1	cpiwmB017
CSPI01G25090	Csa1G538800	Cucumber (Chinese Long) v2	cpicuB001
CSPI01G25090	MELO3C002800	Melon (DHL92) v3.5.1	cpimeB014
CSPI01G25090	ClCG03G006340	Watermelon (Charleston Gray)	cpiwcgB044
CSPI01G25090	Lsi02G009360	Bottle gourd (USVL1VR-Ls)	cpilsiB036
CSPI01G25090	MELO3C002800.2	Melon (DHL92) v3.6.1	cpimedB015
CSPI01G25090	CsaV3_1G037420	Cucumber (Chinese Long) v3	cpicucB000
CSPI01G25090	Cla97C03G057610	Watermelon (97103) v2	cpiwmbB038
CSPI01G25090	Bhi08G000995	Wax gourd	cpiwgoB064
CSPI01G25090	Cucsa.167180	Cucumber (Gy14) v1	cgycpiB262
CSPI01G25090	CsGy1G024510	Cucumber (Gy14) v2	cgybcpiB002

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI01G25090	Watermelon (97103) v2	cpiwmbB039
CSPI01G25090	Cucurbita maxima (Rimu)	cmacpiB210
CSPI01G25090	Cucurbita maxima (Rimu)	cmacpiB221
CSPI01G25090	Cucurbita maxima (Rimu)	cmacpiB396
CSPI01G25090	Cucurbita maxima (Rimu)	cmacpiB406
CSPI01G25090	Cucurbita moschata (Rifu)	cmocpiB198
CSPI01G25090	Cucurbita moschata (Rifu)	cmocpiB207
CSPI01G25090	Cucurbita moschata (Rifu)	cmocpiB384
CSPI01G25090	Cucurbita moschata (Rifu)	cmocpiB392
CSPI01G25090	Watermelon (Charleston Gray)	cpiwcgB045
CSPI01G25090	Watermelon (97103) v1	cpiwmB016
CSPI01G25090	Cucurbita pepo (Zucchini)	cpecpiB021
CSPI01G25090	Cucurbita pepo (Zucchini)	cpecpiB026
CSPI01G25090	Cucurbita pepo (Zucchini)	cpecpiB508
CSPI01G25090	Cucurbita pepo (Zucchini)	cpecpiB521
CSPI01G25090	Bottle gourd (USVL1VR-Ls)	cpilsiB022
CSPI01G25090	Melon (DHL92) v3.6.1	cpimedB027
CSPI01G25090	Silver-seed gourd	carcpiB0430
CSPI01G25090	Silver-seed gourd	carcpiB0458
CSPI01G25090	Silver-seed gourd	carcpiB0460