MELO3C002714.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C002714.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	60S ribosomal protein L18a-like protein
Location	chr12 : 21763114 .. 21766676 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ACAACTCCACTTCACCAAAATCAGGAAACACCACCGCCTTATTAGAAACCGGAGACACCCATTCTCCTTTACGCCAAGCTCCGTCCACCCTCCCTCCCAACTTTTCCGGCGAAATCGCAGAAGAAGAGAACTGCGACGACGAGACCTTCGCCGTCGTCTTGATATTCAAGAAACCCTCTCTGATTCTTCTTCTGCAAACAATATGAGTGGCGACGGGAAAAGCAGCGTGGTATTCGGCGATCCACATAGTCAATACCATTACGGTACGTTTCAGGGTGTTGCGAACTATTATACTTCTCCTCCACAACCGCAACCGCAACCGCAGCCCCAATCTGTCGTCGGTTTCCCTCAGCCGGTTGCGCCACCCGTTGTTTCTGGTCATCAACCATGCTACCATGGTCATTTGGGTTACCAAGCTGTTCCTGGTAAATAGCTATCCTCATTGATGTTTTTTTTTTTAAATTCATGTTCATGGATTTGGATGATTTTGTTATGTATGAATTCTGGCAAATGGTGATGAATTTGGAATCTACAGATCAATATCGTGGTTCCTCCTAGGAGTTTGTGCAGAATTTTTGCTCAAATATTATTGTTTAATTGATTATGAATTGTTTGCTTTGTTTAGGGATTGAGTTTTATGGTGTTTCGTGTGGGCTTTGATAACGATCGTGATGGTTTTTCTTTGTTACTTCTTTGCACATATTGGTATCCGTTGGTTTAATAATTATTAAATGCGTCTATGATGCTCATTGTGGTTTATAATTGATTTTCTTTATCTGTTGTTTCGGCTGTTATTGATTCACCGGTATGAATGTGTGAGTAATATCCCAATGTTTAGTTTGAATATCACCCCCTAATAATGTATAGGGTCGTGAGAAATAAGGTTAAAAATTATGTTAAGGGTTAATAGGGACCGCTTTCTAGCCTACCAGTTGGGACTGTCGACATTATTTACCTGAAGAAGTAACATAGTGCAGGTGAATCGAATGCTTCAAGAGCTAACTTATTGAAATAATGATGATCTAGCCAGCTATAGGATATTATTTTGATCCCGAGTTTGTATCTGGCATGGGGACGTATGTATTTCCTTAGAAACAAGGAACATTCTTTTATAGCATCAGCATGTGGATGTGCAAGAGAGAGGAGGAGAGATATTGAAAATGCTACCCTCTTTTTTATGGTGATTGCAGAAAGATATTTTCTGGTAGACTTAAATTTTAATAGGAGAACAATTGCTGAACTCTTTACTTCGAAATTACCTGTATCATCTATTTTGCAAAACCTGGGTGCTCTATTAAAAATCTAAAACCTCTTCGAACGTAATTGGTCTAGAGGTCCTTTTCGTTCCACATCTCAATTCTTCCGTATTATAGATAGCTCATAGCATGAAATTCTTCTGAAGAATATGGATAACAATGGTTTCTTGAGCATGCACAATCGTTTATTTCTGTGTATAAGGCATCTAGGAAAGTGTTTTAGGAGATAGAGAAGAGTCAGAGATTTTTGAAGAAGGTCTATTCTTGGATGTTGGCCCGAATCTAATTAATTGGCAGACAATGTCCTCAGCTGGAGGATGGTATGGATGTTACTAGAGCCGTTTAATGGGGATGTATTGTTAAAGAGAATGGAGAAGTTCTTTTAATCAAGGAAAGGATTGTGGGAAAATTGTGTTTTTGTTTGTTTCTTTCTCATGTAGCGACTTCCATAAGGTATTCTGGAACTATTCTCTTTACACGGTAGGTGCCAATTGTTGGTACTGACTATTTAGTCATTTTTGCCTTTTTCTCATCACCCATTAAGATTACAGATAGATATATCAAGTCCTTTTTTAAAGGATTGCTTAGAACTTGTTTATAATGAAAAAAATCATTGCGATATTCCTTTGAAGACTGTAGCTGTGCAATGCTAACAGTGTACAAATTGGCACATCAAATTTTATCTTTGGTACAACTGATTACCGAGATTAACAACGCTTTTCATCTTAAAAGTGAAGGGGGTATCACTCACCAGATATTTCTGTCAACATGTCTTGCTATTGAGAAGTAGCATCCAGCATCTTGCCCAGTGCAAGTATTCACCAAATCAGTGACGATAAGATTCTGTAATTCGCTTATCCATCGTCCTACTTAATGCTTTTATTTTTTGTAGTTCAAGGTTATGCTATCCTTGAGGGAAGACCTTTTCAAGAAGCCCGTCTTCCTTGCTGTGGCATTGGCATGGGCTGGTTCTTGTAAGTTATATTTGTGAGACCAGATTTTTCTGCACTCATTCCCAGCGTGCCGTTGATTAAGAAAAATAATTGTTTTACAGGTTTATGATCGGCTTCTTTCTTGGTGGCATTCCCTGGTATGTTGGAGCTTTTATTGTACTCTTTGTACGGGTCGATTACCGAGAAAAGCCTGGATATGTTGCGTGTGCAATTGCTGTAAGTATCGATTATATGAATATATTACCTATCCTCAAAAATATGATTTCTCACCTATCTCAATAATATTAGTGATGACATTACTCCAAGTGATACTCAAAATGAGGAAGATTTGGGATGTTTTAAGACATTCTCTATAGTATTAGGTTCAAGGAAAATTTATTGACTGTTTTATAGAGCTGAGCGAAGAATTAGTGTAGGTGGGGAATGAGTACATCAGTGATGAGTTGAGCACCCAACTCTTTGCTTCAAATTAGTAAGGGCAAACATCAATTTATACCCTTCATCTTGCGTTTTTATCAATTCAAACCATAGACTCGTATTTATATCAATTTAAACTCTGTAGTTTAGCACTGGCATCAATTTACGCCCTCCATAATATTTCGTTTGGAAAAATCTTGTGTTACTAAAACTTATAATTGTATCAATTAAAATGCCTACACTTTTATAAATGAATCAATTTAGACTCTTAGACGTAATTTCCTCTTAAAATTGTTTATGCATATACTTTAATCGACAGTTTTGTTAAACCATACAAAGAGATCGACCCACTTTTGAGAATTAAAGCATAGTGCATGGATGATTTTTTGTAATGTAGAGTCTTAGTTGATTGACTTATGAAAATTTGTAAGTTTGATTATCTCAGATTATAAGTTTCAGGTGATTATTTTTAGAAGTTCAATGGTCTCAATTAATTGCCTGATGTTTCATTTTCTTGGACTTGACTGTGTTGTGCTAGGATGTTATGATTTCCATCTACTGATTTTGAAATTGTGCTTTATTTTTGCTTGCTCAGTCAGTTCTTGCTGTCATTGCTATAACATTTGGTATCACCAACGGAGTTGAGCCCTGGTGAAGGAAACATATGAAGAACAGTTTGGTCTGGTCAATACCGATGTCACCCTCCCTCTGTATCGAAAAAAACAACTGGTGGGATACTGTAATGAGCTTTTGAAATTGTTATTCTTTCAGTTTATATTTATCAACTTATTGGTTTCCTTTACCGTAAATATGTTGGAAACTTCCTGACTTGCCAAAATTTGAAATGAAATGTTAATAGATTGAAGACAAAACTATTAGCTTTATTGGAAGGGGTTTTCTTTTTTATTATAATTATAAATTTCAGGATCAGTTTGCA

mRNA sequence

ACAACTCCACTTCACCAAAATCAGGAAACACCACCGCCTTATTAGAAACCGGAGACACCCATTCTCCTTTACGCCAAGCTCCGTCCACCCTCCCTCCCAACTTTTCCGGCGAAATCGCAGAAGAAGAGAACTGCGACGACGAGACCTTCGCCGTCGTCTTGATATTCAAGAAACCCTCTCTGATTCTTCTTCTGCAAACAATATGAGTGGCGACGGGAAAAGCAGCGTGGTATTCGGCGATCCACATAGTCAATACCATTACGGTACGTTTCAGGGTGTTGCGAACTATTATACTTCTCCTCCACAACCGCAACCGCAACCGCAGCCCCAATCTGTCGTCGGTTTCCCTCAGCCGGTTGCGCCACCCGTTGTTTCTGGTCATCAACCATGCTACCATGGTCATTTGGGTTACCAAGCTGTTCCTGTTCAAGGTTATGCTATCCTTGAGGGAAGACCTTTTCAAGAAGCCCGTCTTCCTTGCTGTGGCATTGGCATGGGCTGGTTCTTGTTTATGATCGGCTTCTTTCTTGGTGGCATTCCCTGGTATGTTGGAGCTTTTATTGTACTCTTTGTACGGGTCGATTACCGAGAAAAGCCTGGATATGTTGCGTGTGCAATTGCTTCAGTTCTTGCTGTCATTGCTATAACATTTGGTATCACCAACGGAGTTGAGCCCTGGTGAAGGAAACATATGAAGAACAGTTTGGTCTGGTCAATACCGATGTCACCCTCCCTCTGTATCGAAAAAAACAACTGGTGGGATACTGTAATGAGCTTTTGAAATTGTTATTCTTTCAGTTTATATTTATCAACTTATTGGTTTCCTTTACCGTAAATATGTTGGAAACTTCCTGACTTGCCAAAATTTGAAATGAAATGTTAATAGATTGAAGACAAAACTATTAGCTTTATTGGAAGGGGTTTTCTTTTTTATTATAATTATAAATTTCAGGATCAGTTTGCA

Coding sequence (CDS)

CAACTCCACTTCACCAAAATCAGGAAACACCACCGCCTTATTAGAAACCGGAGACACCCATTCTCCTTTACGCCAAGCTCCGTCCACCCTCCCTCCCAACTTTTCCGGCGAAATCGCAGAAGAAGAGAACTGCGACGACGAGACCTTCGCCGTCGTCTTGATATTCAAGAAACCCTCTCTGATTCTTCTTCTGCAAACAATATGAGTGGCGACGGGAAAAGCAGCGTGGTATTCGGCGATCCACATAGTCAATACCATTACGGTACGTTTCAGGGTGTTGCGAACTATTATACTTCTCCTCCACAACCGCAACCGCAACCGCAGCCCCAATCTGTCGTCGGTTTCCCTCAGCCGGTTGCGCCACCCGTTGTTTCTGGTCATCAACCATGCTACCATGGTCATTTGGGTTACCAAGCTGTTCCTGTTCAAGGTTATGCTATCCTTGAGGGAAGACCTTTTCAAGAAGCCCGTCTTCCTTGCTGTGGCATTGGCATGGGCTGGTTCTTGTTTATGATCGGCTTCTTTCTTGGTGGCATTCCCTGGTATGTTGGAGCTTTTATTGTACTCTTTGTACGGGTCGATTACCGAGAAAAGCCTGGATATGTTGCGTGTGCAATTGCTTCAGTTCTTGCTGTCATTGCTATAACATTTGGTATCACCAACGGAGTTGAGCCCTGGTGA

Protein sequence

QLHFTKIRKHHRLIRNRRHPFSFTPSSVHPPSQLFRRNRRRRELRRRDLRRRLDIQETLSDSSSANNMSGDGKSSVVFGDPHSQYHYGTFQGVANYYTSPPQPQPQPQPQSVVGFPQPVAPPVVSGHQPCYHGHLGYQAVPVQGYAILEGRPFQEARLPCCGIGMGWFLFMIGFFLGGIPWYVGAFIVLFVRVDYREKPGYVACAIASVLAVIAITFGITNGVEPW

Homology

[Close]

BLAST of MELO3C002714.2 vs. NCBI nr
Match: XP_008444018.1 (PREDICTED: 60S ribosomal protein L18a-like protein [Cucumis melo])

HSP 1 Score: 313.5 bits (802), Expect = 5.7e-82
Identity = 159/159 (100.00%), Postives = 159/159 (100.00%), Query Frame = 0


Query: 68  MSGDGKSSVVFGDPHSQYHYGTFQGVANYYTSPPXXXXXXXXXXVVGFPQPVAPPVVSGH 127
           MSGDGKSSVVFGDPHSQYHYGTFQGVANYYTSPPXXXXXXXXXXVVGFPQPVAPPVVSGH
Sbjct: 1   MSGDGKSSVVFGDPHSQYHYGTFQGVANYYTSPPXXXXXXXXXXVVGFPQPVAPPVVSGH 60

Query: 128 QPCYHGHLGYQAVPVQGYAILEGRPFQEARLPCCGIGMGWFLFMIGFFLGGIPWYVGAFI 187
           QPCYHGHLGYQAVPVQGYAILEGRPFQEARLPCCGIGMGWFLFMIGFFLGGIPWYVGAFI
Sbjct: 61  QPCYHGHLGYQAVPVQGYAILEGRPFQEARLPCCGIGMGWFLFMIGFFLGGIPWYVGAFI 120

Query: 188 VLFVRVDYREKPGYVACAIASVLAVIAITFGITNGVEPW 227
           VLFVRVDYREKPGYVACAIASVLAVIAITFGITNGVEPW
Sbjct: 121 VLFVRVDYREKPGYVACAIASVLAVIAITFGITNGVEPW 159

[Close]

BLAST of MELO3C002714.2 vs. NCBI nr
Match: XP_004147407.1 (PREDICTED: 60S ribosomal protein L18a-like protein [Cucumis sativus] >KGN65566.1 hypothetical protein Csa_1G448970 [Cucumis sativus])

HSP 1 Score: 309.3 bits (791), Expect = 1.1e-80
Identity = 157/159 (98.74%), Postives = 158/159 (99.37%), Query Frame = 0


Query: 68  MSGDGKSSVVFGDPHSQYHYGTFQGVANYYTSPPXXXXXXXXXXVVGFPQPVAPPVVSGH 127
           MSGDGKS+VVFGDPHSQYHYGTFQGVANYYTSPPXXXXXXXXXXVVGFPQPVA PVVSGH
Sbjct: 1   MSGDGKSNVVFGDPHSQYHYGTFQGVANYYTSPPXXXXXXXXXXVVGFPQPVAQPVVSGH 60

Query: 128 QPCYHGHLGYQAVPVQGYAILEGRPFQEARLPCCGIGMGWFLFMIGFFLGGIPWYVGAFI 187
           QPCYHGHLGYQAVPVQGYAILEGRPFQEARLPCCGIGMGWFLFMIGFFLGGIPWYVGAFI
Sbjct: 61  QPCYHGHLGYQAVPVQGYAILEGRPFQEARLPCCGIGMGWFLFMIGFFLGGIPWYVGAFI 120

Query: 188 VLFVRVDYREKPGYVACAIASVLAVIAITFGITNGVEPW 227
           VLFVRVDYREKPGYVACAIASVLAVIAITFGITNGVEPW
Sbjct: 121 VLFVRVDYREKPGYVACAIASVLAVIAITFGITNGVEPW 159

[Close]

BLAST of MELO3C002714.2 vs. NCBI nr
Match: XP_022140257.1 (60S ribosomal protein L18a-like protein [Momordica charantia])

HSP 1 Score: 270.4 bits (690), Expect = 5.5e-69
Identity = 137/159 (86.16%), Postives = 144/159 (90.57%), Query Frame = 0


Query: 68  MSGDGKSSVVFGDPHSQYHYGTFQGVANYYTSPPXXXXXXXXXXVVGFPQPVAPPVVSGH 127
           MSGDGK+S V GDP SQYHYGTFQGVANYY S  XXXXXXXXX VVGFPQPVAPP VSG 
Sbjct: 1   MSGDGKNSAVLGDPQSQYHYGTFQGVANYYPSAXXXXXXXXXXSVVGFPQPVAPPRVSGP 60

Query: 128 QPCYHGHLGYQAVPVQGYAILEGRPFQEARLPCCGIGMGWFLFMIGFFLGGIPWYVGAFI 187
            P YHGHLGYQAVPVQGYAI+EGRP+QEARLPCCGIGMGWFLF+IGFFLGGIPWYVGAFI
Sbjct: 61  HPYYHGHLGYQAVPVQGYAIIEGRPYQEARLPCCGIGMGWFLFVIGFFLGGIPWYVGAFI 120

Query: 188 VLFVRVDYREKPGYVACAIASVLAVIAITFGITNGVEPW 227
           VLFVRVDYREKPGYVAC IASVLA++AITFG+T G E W
Sbjct: 121 VLFVRVDYREKPGYVACVIASVLALVAITFGVTKGAESW 159

[Close]

BLAST of MELO3C002714.2 vs. NCBI nr
Match: XP_022927552.1 (60S ribosomal protein L18a-like protein [Cucurbita moschata])

HSP 1 Score: 265.8 bits (678), Expect = 1.4e-67
Identity = 136/159 (85.53%), Postives = 143/159 (89.94%), Query Frame = 0


Query: 68  MSGDGKSSVVFGDPHSQYHYGTFQGVANYYTSPPXXXXXXXXXXVVGFPQPVAPPVVSGH 127
           MSGDGKSS VFGDP SQYHYGTFQGVANYY+S PXXXXXXXXX VVGFP  VAPP     
Sbjct: 1   MSGDGKSSAVFGDPQSQYHYGTFQGVANYYSSAPXXXXXXXXXSVVGFPPQVAPP----R 60

Query: 128 QPCYHGHLGYQAVPVQGYAILEGRPFQEARLPCCGIGMGWFLFMIGFFLGGIPWYVGAFI 187
            PCYHGHL YQAVPVQGYAI+EGRPF EARLPCCGIGMGWFLFMIGFFLGGIPWYVGAF+
Sbjct: 61  HPCYHGHLDYQAVPVQGYAIIEGRPFHEARLPCCGIGMGWFLFMIGFFLGGIPWYVGAFV 120

Query: 188 VLFVRVDYREKPGYVACAIASVLAVIAITFGITNGVEPW 227
           VLFVRVDYREKPGY+ACAIASVLAV+AITFG++ GVE W
Sbjct: 121 VLFVRVDYREKPGYIACAIASVLAVMAITFGVSKGVEIW 155

[Close]

BLAST of MELO3C002714.2 vs. NCBI nr
Match: XP_023519744.1 (60S ribosomal protein L18a-like protein [Cucurbita pepo subsp. pepo])

HSP 1 Score: 263.1 bits (671), Expect = 8.9e-67
Identity = 135/159 (84.91%), Postives = 142/159 (89.31%), Query Frame = 0


Query: 68  MSGDGKSSVVFGDPHSQYHYGTFQGVANYYTSPPXXXXXXXXXXVVGFPQPVAPPVVSGH 127
           MSGDGKSS VFGDP SQYHYGTFQGVANYY+S PXXXXXXXXX VVGFP  VAPP     
Sbjct: 1   MSGDGKSSAVFGDPQSQYHYGTFQGVANYYSSAPXXXXXXXXXSVVGFPPQVAPP----R 60

Query: 128 QPCYHGHLGYQAVPVQGYAILEGRPFQEARLPCCGIGMGWFLFMIGFFLGGIPWYVGAFI 187
            PCYHGHL YQAVPVQGYAI+EG PF EARLPCCGIGMGWFLFMIGFFLGGIPWYVGAF+
Sbjct: 61  HPCYHGHLDYQAVPVQGYAIIEGGPFHEARLPCCGIGMGWFLFMIGFFLGGIPWYVGAFV 120

Query: 188 VLFVRVDYREKPGYVACAIASVLAVIAITFGITNGVEPW 227
           VLFVRVDYREKPGY+ACAIASVLAV+AITFG++ GVE W
Sbjct: 121 VLFVRVDYREKPGYIACAIASVLAVMAITFGVSKGVEIW 155

[Close]

BLAST of MELO3C002714.2 vs. TAIR10
Match: AT1G17080.1 (Ribosomal protein L18ae family)

HSP 1 Score: 163.7 bits (413), Expect = 1.3e-40
Identity = 85/158 (53.80%), Postives = 107/158 (67.72%), Query Frame = 0


Query: 71  DGKSSVVFGDPHSQYH-YGTFQGVANYYTSPPXXXXXXXXXXVVGFPQPVAPPVVSGHQP 130
           + KS     +  +Q+H YGTFQGV+NY   PP          V GFPQP APP V     
Sbjct: 6   EDKSKGFASEEGNQHHQYGTFQGVSNY---PP----PQNSAPVTGFPQPSAPPGVYDSGA 65

Query: 131 CYHGHLGYQAVPVQGYAILEGRPFQEARLPCCGIGMGWFLFMIGFFLGGIPWYVGAFIVL 190
            Y+ H GYQ VPV G  + EGRP ++ RLPCCGIG+GWFLF++GFFLG IPWYVG FI++
Sbjct: 66  PYYAH-GYQTVPVHG-GVAEGRPVRQRRLPCCGIGLGWFLFIVGFFLGAIPWYVGLFIMM 125

Query: 191 F-VRVDYREKPGYVACAIASVLAVIAITFGITNGVEPW 227
           F  R+DYREKPGY+AC IA++LA IA+  G++ G + W
Sbjct: 126 FGRRIDYREKPGYIACTIAAILATIAVILGVSKGADDW 154

[Close]

BLAST of MELO3C002714.2 vs. TAIR10
Match: AT1G53560.1 (Ribosomal protein L18ae family)

HSP 1 Score: 122.9 bits (307), Expect = 2.6e-28
Identity = 73/140 (52.14%), Postives = 87/140 (62.14%), Query Frame = 0


Query: 87  YGTFQGVANYYTSPPXXXXXXXXXXVVGFPQPVAPPVVSGHQPCYHGHLGYQAVPVQGYA 146
           YGTFQGV  Y   PPXXXXXXXXXX               H          +   V GY 
Sbjct: 16  YGTFQGVPTY---PPXXXXXXXXXXXXXXXXXXXXXXXXXHHDISVHQYIQEXQTVAGYP 75

Query: 147 ILEGRPFQEARLPCCGIGMGWFLFMIGFFLGGIPWYVGAFIVLFVRVDYREKPGYVACAI 206
           + +GRP ++ RLPCCG+G+GWFLF+IGF LG IPWYVG FI++  R+D REKPGYVAC I
Sbjct: 76  VSQGRPARQNRLPCCGLGLGWFLFIIGFLLGAIPWYVGVFILVCARIDPREKPGYVACTI 135

Query: 207 ASVLAVIAITFGITNGVEPW 227
           A+V+A I I FG+  G   W
Sbjct: 136 AAVVATITIVFGVMGGRGVW 152

[Close]

BLAST of MELO3C002714.2 vs. TAIR10
Match: AT1G29970.2 (60S ribosomal protein L18A-1)

HSP 1 Score: 121.3 bits (303), Expect = 7.5e-28
Identity = 64/124 (51.61%), Postives = 78/124 (62.90%), Query Frame = 0


Query: 84  QYHYGTFQGVANYYTSPPXXXXXXXXXXVVGFPQPVAPPVVSGHQPCYHGHLGYQAVPVQ 143
           QY+YGTFQGVAN+ T  P          +  FP   A   + GH    +   G+  V V 
Sbjct: 18  QYYYGTFQGVANFPTPTPPPQFMQPQHPITTFPGH-AYQNLQGHGGGVNYAQGFPVV-VP 77

Query: 144 GYAILEGRPFQEARLPCCGIGMGWFLFMIGFFLGGIPWYVGAFIVLFVRVDYREKPGYVA 203
            Y ++E RP  E  LPCCG+GMGWFLF++GF  GGIPWY+GAFIVL   VD+REK GYVA
Sbjct: 78  DYTVVEVRPMIEHELPCCGLGMGWFLFIMGFLFGGIPWYLGAFIVLVTSVDHREKAGYVA 137

Query: 204 CAIA 208
           C+IA
Sbjct: 138 CSIA 139

[Close]

BLAST of MELO3C002714.2 vs. TAIR10
Match: AT3G14595.1 (Ribosomal protein L18ae family)

HSP 1 Score: 82.0 bits (201), Expect = 5.1e-16
Identity = 38/76 (50.00%), Postives = 52/76 (68.42%), Query Frame = 0


Query: 151 RPFQEARLPCCGIGMGWFLFMIGFFLGGIPWYVGAFIVLFVRVDYREKPGYVACAIASVL 210
           RP +  R  CCGIG+GW LF++GFF   +PWY+G F++LF R + RE+PGY+ACA+ +V 
Sbjct: 60  RPTEHGR--CCGIGIGWVLFILGFFF-ALPWYIGFFLLLFSR-NPRERPGYIACAVGAVF 119

Query: 211 AVIAITFGITNGVEPW 227
           A I + FG   G   W
Sbjct: 120 ATIIVIFGTVRGSGVW 131

[Close]

BLAST of MELO3C002714.2 vs. TAIR10
Match: AT1G54217.2 (Ribosomal protein L18ae family)

HSP 1 Score: 46.2 bits (108), Expect = 3.1e-05
Identity = 25/64 (39.06%), Postives = 37/64 (57.81%), Query Frame = 0


Query: 158 LPCCGIGMGWFLFMIGFFLGGIPWYVGAFIVL--FVRVDYREKPGYVACAIASVLAVIAI 217
           LPC G G+GWF F++GF      WYV  F+ L  +   D RE+ G  A AIA+++  +A+
Sbjct: 33  LPCFGFGIGWFSFLLGFVF-PFAWYVATFLYLISYYHRDPRERSGLAASAIAALIFSVAL 92

Query: 218 TFGI 220
              +
Sbjct: 93  VITV 95

[Close]

BLAST of MELO3C002714.2 vs. Swiss-Prot
Match: sp|Q8L9S1|R18AL_ARATH (60S ribosomal protein L18a-like protein OS=Arabidopsis thaliana OX=3702 GN=At1g29970 PE=2 SV=2)

HSP 1 Score: 136.7 bits (343), Expect = 3.1e-31
Identity = 71/143 (49.65%), Postives = 90/143 (62.94%), Query Frame = 0


Query: 84  QYHYGTFQGVANYYTSPPXXXXXXXXXXVVGFPQPVAPPVVSGHQPCYHGHLGYQAVPVQ 143
           QY+YGTFQGVAN+ T  P          +  FP   A   + GH    +   G+  V V 
Sbjct: 18  QYYYGTFQGVANFPTPTPPPQFMQPQHPITTFPGH-AYQNLQGHGGGVNYAQGFPVV-VP 77

Query: 144 GYAILEGRPFQEARLPCCGIGMGWFLFMIGFFLGGIPWYVGAFIVLFVRVDYREKPGYVA 203
            Y ++E RP  E  LPCCG+GMGWFLF++GF  GGIPWY+GAFIVL   VD+REK GYVA
Sbjct: 78  DYTVVEVRPMIEHELPCCGLGMGWFLFIMGFLFGGIPWYLGAFIVLVTSVDHREKAGYVA 137

Query: 204 CAIASVLAVIAITFGITNGVEPW 227
           C+IASV+ +IA+  G+T  +  W
Sbjct: 138 CSIASVVYLIAVMLGMTGDINIW 158

[Close]

BLAST of MELO3C002714.2 vs. TrEMBL
Match: tr|A0A1S3B9D9|A0A1S3B9D9_CUCME (60S ribosomal protein L18a-like protein OS=Cucumis melo OX=3656 GN=LOC103487462 PE=4 SV=1)

HSP 1 Score: 313.5 bits (802), Expect = 3.8e-82
Identity = 159/159 (100.00%), Postives = 159/159 (100.00%), Query Frame = 0


Query: 68  MSGDGKSSVVFGDPHSQYHYGTFQGVANYYTSPPXXXXXXXXXXVVGFPQPVAPPVVSGH 127
           MSGDGKSSVVFGDPHSQYHYGTFQGVANYYTSPPXXXXXXXXXXVVGFPQPVAPPVVSGH
Sbjct: 1   MSGDGKSSVVFGDPHSQYHYGTFQGVANYYTSPPXXXXXXXXXXVVGFPQPVAPPVVSGH 60

Query: 128 QPCYHGHLGYQAVPVQGYAILEGRPFQEARLPCCGIGMGWFLFMIGFFLGGIPWYVGAFI 187
           QPCYHGHLGYQAVPVQGYAILEGRPFQEARLPCCGIGMGWFLFMIGFFLGGIPWYVGAFI
Sbjct: 61  QPCYHGHLGYQAVPVQGYAILEGRPFQEARLPCCGIGMGWFLFMIGFFLGGIPWYVGAFI 120

Query: 188 VLFVRVDYREKPGYVACAIASVLAVIAITFGITNGVEPW 227
           VLFVRVDYREKPGYVACAIASVLAVIAITFGITNGVEPW
Sbjct: 121 VLFVRVDYREKPGYVACAIASVLAVIAITFGITNGVEPW 159

[Close]

BLAST of MELO3C002714.2 vs. TrEMBL
Match: tr|A0A0A0M051|A0A0A0M051_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G448970 PE=4 SV=1)

HSP 1 Score: 309.3 bits (791), Expect = 7.1e-81
Identity = 157/159 (98.74%), Postives = 158/159 (99.37%), Query Frame = 0


Query: 68  MSGDGKSSVVFGDPHSQYHYGTFQGVANYYTSPPXXXXXXXXXXVVGFPQPVAPPVVSGH 127
           MSGDGKS+VVFGDPHSQYHYGTFQGVANYYTSPPXXXXXXXXXXVVGFPQPVA PVVSGH
Sbjct: 1   MSGDGKSNVVFGDPHSQYHYGTFQGVANYYTSPPXXXXXXXXXXVVGFPQPVAQPVVSGH 60

Query: 128 QPCYHGHLGYQAVPVQGYAILEGRPFQEARLPCCGIGMGWFLFMIGFFLGGIPWYVGAFI 187
           QPCYHGHLGYQAVPVQGYAILEGRPFQEARLPCCGIGMGWFLFMIGFFLGGIPWYVGAFI
Sbjct: 61  QPCYHGHLGYQAVPVQGYAILEGRPFQEARLPCCGIGMGWFLFMIGFFLGGIPWYVGAFI 120

Query: 188 VLFVRVDYREKPGYVACAIASVLAVIAITFGITNGVEPW 227
           VLFVRVDYREKPGYVACAIASVLAVIAITFGITNGVEPW
Sbjct: 121 VLFVRVDYREKPGYVACAIASVLAVIAITFGITNGVEPW 159

[Close]

BLAST of MELO3C002714.2 vs. TrEMBL
Match: tr|A0A2I4HA23|A0A2I4HA23_9ROSI (60S ribosomal protein L18a-like protein OS=Juglans regia OX=51240 GN=LOC109014971 PE=4 SV=1)

HSP 1 Score: 190.7 bits (483), Expect = 3.7e-45
Identity = 99/162 (61.11%), Postives = 112/162 (69.14%), Query Frame = 0


Query: 68  MSGDGKSSVVFGDPHSQYHYGTFQGVANYYTSPPXXXXXXXXXXVVGFPQPVAPP---VV 127
           MS DGK   +  D  SQ+HYGTFQGVANY  +PP          VVGFPQPV PP   V 
Sbjct: 1   MSEDGKGRGLIDDQQSQFHYGTFQGVANY--NPP--APQPLPHPVVGFPQPVPPPGFTVD 60

Query: 128 SGHQPCYHGHLGYQAVPVQGYAILEGRPFQEARLPCCGIGMGWFLFMIGFFLGGIPWYVG 187
           S +    H H GYQ   V+GYAI+EGRP  E  LPCCGIGMGW LF+ GFFLGGIPWY+G
Sbjct: 61  SRYNHQRHNHYGYQT--VEGYAIVEGRPVSEPSLPCCGIGMGWVLFITGFFLGGIPWYIG 120

Query: 188 AFIVLFVRVDYREKPGYVACAIASVLAVIAITFGITNGVEPW 227
            FI+L VRVDYREKPGYVAC +AS+LAVIA+  G+T G   W
Sbjct: 121 TFILLCVRVDYREKPGYVACTVASLLAVIAVMLGVTKGTRVW 156

[Close]

BLAST of MELO3C002714.2 vs. TrEMBL
Match: tr|A0A067GS61|A0A067GS61_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g045574mg PE=4 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 4.5e-43
Identity = 95/161 (59.01%), Postives = 114/161 (70.81%), Query Frame = 0


Query: 68  MSGDGKSSVVFGDPHSQYHYGTFQGVANYYTSPPXXXXXXXXXXVVGFPQPVAP--PVVS 127
           M+ + K   +  +P ++ +YGTFQGV NYY  PP          VVG PQP+ P  P +S
Sbjct: 1   MNDEQKGRGLISNPQNKNYYGTFQGVVNYY--PP--FPQAPPQQVVGLPQPIPPPGPGIS 60

Query: 128 GHQPCYHGHLGYQAVPVQGYAILEGRPFQEARLPCCGIGMGWFLFMIGFFLGGIPWYVGA 187
            H P  +GH GYQ +P  GYA++EGRP  E RLPCCGIGMGWFLF+IGFFLGGIPWYVGA
Sbjct: 61  NH-PLLYGH-GYQTIP--GYAVVEGRPLGEYRLPCCGIGMGWFLFIIGFFLGGIPWYVGA 120

Query: 188 FIVLFVRVDYREKPGYVACAIASVLAVIAITFGITNGVEPW 227
           FI L  +VDYREKPGY+ACAIASVL +IA+T G+T G   W
Sbjct: 121 FIALCAQVDYREKPGYIACAIASVLTMIALTLGVTKGAHTW 153

[Close]

BLAST of MELO3C002714.2 vs. TrEMBL
Match: tr|V4UKQ3|V4UKQ3_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10017045mg PE=4 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 5.9e-43
Identity = 95/161 (59.01%), Postives = 114/161 (70.81%), Query Frame = 0


Query: 68  MSGDGKSSVVFGDPHSQYHYGTFQGVANYYTSPPXXXXXXXXXXVVGFPQPVAP--PVVS 127
           M+ + K   +  +P +Q +YGTFQGV NY+  PP          VVG PQP+ P  P +S
Sbjct: 1   MNDEQKGRGLISNPQNQNYYGTFQGVVNYH--PP--FPQAPPQQVVGLPQPIPPPGPGIS 60

Query: 128 GHQPCYHGHLGYQAVPVQGYAILEGRPFQEARLPCCGIGMGWFLFMIGFFLGGIPWYVGA 187
            H P  +GH GYQ +P  GYA++EGRP  E RLPCCGIGMGWFLF+IGFFLGGIPWYVGA
Sbjct: 61  NH-PLLYGH-GYQTIP--GYAVVEGRPLGEHRLPCCGIGMGWFLFIIGFFLGGIPWYVGA 120

Query: 188 FIVLFVRVDYREKPGYVACAIASVLAVIAITFGITNGVEPW 227
           FI L  +VDYREKPGY+ACAIASVL +IA+T G+T G   W
Sbjct: 121 FIALCAQVDYREKPGYIACAIASVLTMIALTLGVTKGAHTW 153

The following BLAST results are available for this feature:

BLAST of MELO3C002714.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008444018.1	5.7e-82	100.00	PREDICTED: 60S ribosomal protein L18a-like protein [Cucumis melo]	[more]
XP_004147407.1	1.1e-80	98.74	PREDICTED: 60S ribosomal protein L18a-like protein [Cucumis sativus] >KGN65566.1...	[more]
XP_022140257.1	5.5e-69	86.16	60S ribosomal protein L18a-like protein [Momordica charantia]	[more]
XP_022927552.1	1.4e-67	85.53	60S ribosomal protein L18a-like protein [Cucurbita moschata]	[more]
XP_023519744.1	8.9e-67	84.91	60S ribosomal protein L18a-like protein [Cucurbita pepo subsp. pepo]	[more]

BLAST of MELO3C002714.2 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G17080.1	1.3e-40	53.80	Ribosomal protein L18ae family	[more]
AT1G53560.1	2.6e-28	52.14	Ribosomal protein L18ae family	[more]
AT1G29970.2	7.5e-28	51.61	60S ribosomal protein L18A-1	[more]
AT3G14595.1	5.1e-16	50.00	Ribosomal protein L18ae family	[more]
AT1G54217.2	3.1e-05	39.06	Ribosomal protein L18ae family	[more]

BLAST of MELO3C002714.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q8L9S1\|R18AL_ARATH	3.1e-31	49.65	60S ribosomal protein L18a-like protein OS=Arabidopsis thaliana OX=3702 GN=At1g2...	[more]

BLAST of MELO3C002714.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3B9D9\|A0A1S3B9D9_CUCME	3.8e-82	100.00	60S ribosomal protein L18a-like protein OS=Cucumis melo OX=3656 GN=LOC103487462 ...	[more]
tr\|A0A0A0M051\|A0A0A0M051_CUCSA	7.1e-81	98.74	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G448970 PE=4 SV=1	[more]
tr\|A0A2I4HA23\|A0A2I4HA23_9ROSI	3.7e-45	61.11	60S ribosomal protein L18a-like protein OS=Juglans regia OX=51240 GN=LOC10901497...	[more]
tr\|A0A067GS61\|A0A067GS61_CITSI	4.5e-43	59.01	Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g045574mg PE=4 SV=1	[more]
tr\|V4UKQ3\|V4UKQ3_9ROSI	5.9e-43	59.01	Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10017045mg PE=4 ...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR028877	50S_L18Ae/Ribosomal_L18a/L20

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C002714.2.1	MELO3C002714.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 96..115
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 100..115
None	No IPR available	PANTHER	PTHR10052:SF30	60S RIBOSOMAL PROTEIN L18A-LIKE PROTEIN	coord: 78..224
IPR028877	50S ribosomal protein L18Ae/60S ribosomal protein L20 and L18a	PANTHER	PTHR10052	60S RIBOSOMAL PROTEIN L18A	coord: 78..224

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C002714.2	Csa1G448970	Cucumber (Chinese Long) v2	cumedB011
MELO3C002714.2	CSPI01G21440	Wild cucumber (PI 183967)	cpimedB012
MELO3C002714.2	Cucsa.212440	Cucumber (Gy14) v1	cgymedB373
MELO3C002714.2	CmaCh13G005590	Cucurbita maxima (Rimu)	cmamedB213
MELO3C002714.2	Lsi02G008640	Bottle gourd (USVL1VR-Ls)	lsimedB189
MELO3C002714.2	CsGy1G021150	Cucumber (Gy14) v2	cgybmedB010
MELO3C002714.2	Cla019609	Watermelon (97103) v1	medwmB144
MELO3C002714.2	ClCG03G007100	Watermelon (Charleston Gray)	medwcgB142
MELO3C002714.2	Cla97C03G058330	Watermelon (97103) v2	medwmbB143
MELO3C002714.2	Bhi08G001723	Wax gourd	medwgoB165
MELO3C002714.2	Carg19922	Silver-seed gourd	carmedB0808
MELO3C002714.2	CsaV3_1G032680	Cucumber (Chinese Long) v3	cucmedB010

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C002714.2	Cucumber (Gy14) v2	cgybmedB396
MELO3C002714.2	Cucumber (Gy14) v1	cgymedB019
MELO3C002714.2	Cucurbita maxima (Rimu)	cmamedB423
MELO3C002714.2	Cucurbita maxima (Rimu)	cmamedB677
MELO3C002714.2	Cucurbita maxima (Rimu)	cmamedB883
MELO3C002714.2	Cucurbita moschata (Rifu)	cmomedB201
MELO3C002714.2	Cucurbita moschata (Rifu)	cmomedB408
MELO3C002714.2	Cucurbita moschata (Rifu)	cmomedB668
MELO3C002714.2	Cucurbita moschata (Rifu)	cmomedB875
MELO3C002714.2	Cucurbita pepo (Zucchini)	cpemedB031
MELO3C002714.2	Cucurbita pepo (Zucchini)	cpemedB062
MELO3C002714.2	Cucurbita pepo (Zucchini)	cpemedB517
MELO3C002714.2	Cucurbita pepo (Zucchini)	cpemedB559
MELO3C002714.2	Wild cucumber (PI 183967)	cpimedB447
MELO3C002714.2	Cucumber (Chinese Long) v2	cumedB438
MELO3C002714.2	Melon (DHL92) v3.6.1	medmedB074
MELO3C002714.2	Bottle gourd (USVL1VR-Ls)	lsimedB138
MELO3C002714.2	Watermelon (Charleston Gray)	medwcgB131
MELO3C002714.2	Watermelon (97103) v1	medwmB164
MELO3C002714.2	Silver-seed gourd	carmedB0153
MELO3C002714.2	Silver-seed gourd	carmedB0557
MELO3C002714.2	Silver-seed gourd	carmedB0942
MELO3C002714.2	Cucumber (Chinese Long) v3	cucmedB454
MELO3C002714.2	Watermelon (97103) v2	medwmbB141
MELO3C002714.2	Watermelon (97103) v2	medwmbB130
MELO3C002714.2	Wax gourd	medwgoB157
MELO3C002714.2	Wax gourd	medwgoB160