Cucsa.212440 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.212440
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
Description60S ribosomal protein L18a, putative
Locationscaffold01543 : 252701 .. 256038 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CATTCTCCATTCCGCCAAGCTCCGTTCACCGTCGCTCCCAACTTTTCCGGTGAAATCGCAGAAGAAGATAACAGTGACGACGAGACCTTCGCCGTCGTCTTGATATTCAAGAAACCTTCTCTGATTCTTCTTCTGCAAACAATATGAGTGGCGACGGGAAAAGCAACGTGGTATTCGGCGATCCACATAGTCAATACCATTACGGTACGTTTCAGGGTGTTGCGAACTATTATACTTCTCCTCCACAACCGCAGCCGCAGCCCCAGCCCCAATCTGTCGTCGGTTTCCCTCAGCCGGTTGCGCAACCCGTTGTTTCTGGTCATCAGCCATGCTACCATGGACATCTGGGTTACCAAGCCGTTCCTGGTAAATAGCTACCCTCGTTGGTGTTTTTTTTtCATCATGTTCGTGGATTTGGATGATTTTGTTATGTATGAATTCTGGCAAATGATGACGAATTTGGAATCTACAGATCAATATCGTGGTTCCTTCTAGGAGTTTGTGCAGAATTTTCGCTAAAATATTATTGTTTAATTGATTATGAATTGTTTGCTTTGTTTAGGGATTGAGTTTTATGGTGTTTCGTGTGGTCTTTGATAATGATCGTGATTATTTTTCTTTGTTACTTCTCTGCACATATTGGTATCCGTTGGTTTGATAATTATTAAATGGGTCTATGATGCTCATTGTGGTTTATAATTGATTTTCTGTATCTGTTGTTTCGGCTGTTATTGATTCACCAGTATGAATGTGTGAGTAATATCCCAATGTTTTTTTTTtATTATCACCCCTAATAATGTTTAGGGCCGTGAGAAATAAGGTTAAAAATTATGTTAAGGATTAATAGGGGATGCTTCTAGCCTACCAGTTGGGACTGTTGACATTATTTACCTGAAGAAGTAACGTAGTGCAGGTGAAATCGAATGCTTCAGGAGCTAACTTATTGAAATAATGACGAACTAGCCAGCTATAGGATATTATTTTGATTCTGAGTTTGTATCTGGCATGGGGACGTAACTATTTCCTTAAAAACAAGGAACATTCTCTTTTAGCATCAACATGTGGATGTGCAAGAGAGGAGGAGATATATTGAGTATGATACCCTCTTTTTATGGTGATTGCGGAAATATATTTTCTGGTAGACTTAAATTTTAATAGGAGACAATTGCTGAACTCTTTACTTCGAAATTACCTGTATCATCTGGGTTGCAAAACCTGGGTACTCTATTAAATATCTAAAACCTCTTCGAACTTAATTGGTCTAGAGGTCTTTTTCATTCCACATCTCAATTCTTACGTATTATAGATGGCTCATAGCATGAAATTCTTCTGAAGAATTTGGAAAACAATGGTCTCTTGAGCATGCACAATCATTTTTTTCTGTGTAGAAGGCATCTAGGAAAGTGTTTTAGGAGATAGAGAAGAGTCAGAGATTTCTGAAGAAAGTCTATTCTTGGATGTTGGCTTGAATCTAATTAATTGGCAGACAATGTCTTCAGCTGGAGGATAGTCTGGAAATTACTAAGCCGATTAATCGGGATGTATTGTTAAAGAGAACGGAGAAATTTTTTTtAATTGAGGAAATAATTGTGGGAAAATTGTGTTTTTATTTCTTTCTTATGTAGCGACTTCCATACGGTATTCTGGAACTATTCTCTTTACACGGTTGGTGCCAATGGTTGGTTCTGACTATTTAATtTTTTTTGCCTTTTGCTCATCACCCAATGAGATTGCAACAAAGATGTATCAAGTCCTTTTTTAAAGGACTGCTTAGAACTTGTTTATAATGAAAAAAAATCATCGCGATATTCCTTTGAAGACTGTAGTTGTGCAATGCTACCAGTGTACAAATTGGCACATCAAATTTTATCTTTGGTACAACTGACTACTGAGATTAACAACTCTTTTCATCTTAAAAGTGAAAGGGGTATCACTCACCAGATGTTTCTGTCAACATGTCTTGCTATTTAGAAGTAGCACCTAGCATCTTGCCCAGTGCAAATATTCACCAAATTAACGACGATAAGATTCTGTAATTCACTTATCCATCATCCTACTTAATGCTTTTATTTCTTATAGTTCAAGGTTATGCTATTCTTGAGGGAAGACCTTTTCAAGAAGCCCGTCTTCCTTGCTGTGGCATTGGCATGGGCTGGTTCTTGTAAGTTATATTTGTGAGACCCCATTTTTCTGCACTCATTCCCAGCATGCCGATGATTAAGaAAAATAATTGTTTTCCAGGTTTATGATTGGCTTCTTTCTTGGTGGCATTCCCTGGTATGTTGGAGCTTTTATTGTACTCTTTGTACGGGTCGATTACCGAGAAAAGCCTGGATATGTTGCATGTGCAATTGCTGTAAGTATCTACTATATGAATATATTACCTATCCTCAGAAATGAGTTCTCACCTATCTCAATAATAATAGTGATGACATTACTCTAAGTGATACTCAAAATGAGGAAGATTTGGGATGTTTTAAGACATTCTCTGAAGTATTAGGTTCAAGGAAAATTTATCGACTGTGTTTTATAGAGCTGAGCCAAGAATTATTGTAGGTGGGTAATGAGTACATAAGTGAGGAGTTGAGCACCCAACTCTTTGTTTCAAATTAGTAAGGGAAAACATCAATTTATACCCTTAATCTTTTGAGTTTGTATCAATTTAAACCATAGACTCATATTTATATCAATTTAAACGCGGTAGTTTTGCGGTGGTATCAATTTACGCCCTCCATAATATTTCGTTTGGAAAAGTTGTGTGTTACTAAAACTTATAATTGTATCAATTAGAATGCCTACACTCTTATAAATGAATCCATAATTTTCTTTTAAAATCATTTATTGACAATTTTGTTAAACCATATAAGACAATTTTTAGAATTAAAGCATAGTGAATGGATGATTTTCGTAAGGAAGAGTCTAAATTGATTGACTTTTGAAAATTTAGAAGTTTGATTATCTCAAATTATAAGTTTCACATAATACTGTTTTCAGAAGTTCAAGTCTCAATTTGATTGCCTGCTGTTTCAATTTCTTGGACTTGACTGTGTTGTATAGCATGTTATAATTTCCATCTACTCATTTTGAAACTGTGCTTTATTTTTGCTTTCTCAGTCAGTTCTTGCTGTCATAGCTATAACATTTGGTATCACCAACGGAGTTGAGCCCTGGTGAAGGAAACATATGAAGAACGGTCTGGTGTGATCGATACCGATGTCGTCACCCTCCCCcTGTATTGACAAACAACTGGTGTGATACTGTAATTAGCTTTTGAATTGTTATTCTTTCCGTCTATATTTATCAACTTATTGGTTTCCTTTACCATATAGATATCGGAA

mRNA sequence

CATTCTCCATTCCGCCAAGCTCCGTTCACCGTCGCTCCCAACTTTTCCGGTGAAATCGCAGAAGAAGATAACAGTGACGACGAGACCTTCGCCGTCGTCTTGATATTCAAGAAACCTTCTCTGATTCTTCTTCTGCAAACAATATGAGTGGCGACGGGAAAAGCAACGTGGTATTCGGCGATCCACATAGTCAATACCATTACGGTACGTTTCAGGGTGTTGCGAACTATTATACTTCTCCTCCACAACCGCAGCCGCAGCCCCAGCCCCAATCTGTCGTCGGTTTCCCTCAGCCGGTTGCGCAACCCGTTGTTTCTGGTCATCAGCCATGCTACCATGGACATCTGGGTTACCAAGCCGTTCCTGTTCAAGGTTATGCTATTCTTGAGGGAAGACCTTTTCAAGAAGCCCGTCTTCCTTGCTGTGGCATTGGCATGGGCTGGTTCTTGTTTATGATTGGCTTCTTTCTTGGTGGCATTCCCTGGTATGTTGGAGCTTTTATTGTACTCTTTGTACGGGTCGATTACCGAGAAAAGCCTGGATATGTTGCATGTGCAATTGCTTCAGTTCTTGCTGTCATAGCTATAACATTTGGTATCACCAACGGAGTTGAGCCCTGGTGAAGGAAACATATGAAGAACGGTCTGGTGTGATCGATACCGATGTCGTCACCCTCCCCCTGTATTGACAAACAACTGGTGTGATACTGTAATTAGCTTTTGAATTGTTATTCTTTCCGTCTATATTTATCAACTTATTGGTTTCCTTTACCATATAGATATCGGAA

Coding sequence (CDS)

ATGAGTGGCGACGGGAAAAGCAACGTGGTATTCGGCGATCCACATAGTCAATACCATTACGGTACGTTTCAGGGTGTTGCGAACTATTATACTTCTCCTCCACAACCGCAGCCGCAGCCCCAGCCCCAATCTGTCGTCGGTTTCCCTCAGCCGGTTGCGCAACCCGTTGTTTCTGGTCATCAGCCATGCTACCATGGACATCTGGGTTACCAAGCCGTTCCTGTTCAAGGTTATGCTATTCTTGAGGGAAGACCTTTTCAAGAAGCCCGTCTTCCTTGCTGTGGCATTGGCATGGGCTGGTTCTTGTTTATGATTGGCTTCTTTCTTGGTGGCATTCCCTGGTATGTTGGAGCTTTTATTGTACTCTTTGTACGGGTCGATTACCGAGAAAAGCCTGGATATGTTGCATGTGCAATTGCTTCAGTTCTTGCTGTCATAGCTATAACATTTGGTATCACCAACGGAGTTGAGCCCTGGTGA

Protein sequence

MSGDGKSNVVFGDPHSQYHYGTFQGVANYYTSPPQPQPQPQPQSVVGFPQPVAQPVVSGHQPCYHGHLGYQAVPVQGYAILEGRPFQEARLPCCGIGMGWFLFMIGFFLGGIPWYVGAFIVLFVRVDYREKPGYVACAIASVLAVIAITFGITNGVEPW*
Homology
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BLAST of Cucsa.212440 vs. Swiss-Prot
Match: R18AL_ARATH (60S ribosomal protein L18a-like protein OS=Arabidopsis thaliana GN=At1g29970 PE=2 SV=2)

HSP 1 Score: 147.5 bits (371), Expect = 1.2e-34
Identity = 73/143 (51.05%), Postives = 92/143 (64.34%), Query Frame = 1 

Query: 17  QYHYGTFQGVANYYTSPPQPQPQPQPQSVVGFPQPVAQPVVSGHQPCYHGHLGYQAVPVQ 76
           QY+YGTFQGVAN+ T  P PQ       +  FP    Q +  GH    +   G+  V V 
Sbjct: 18  QYYYGTFQGVANFPTPTPPPQFMQPQHPITTFPGHAYQNL-QGHGGGVNYAQGFPVV-VP 77

Query: 77  GYAILEGRPFQEARLPCCGIGMGWFLFMIGFFLGGIPWYVGAFIVLFVRVDYREKPGYVA 136
            Y ++E RP  E  LPCCG+GMGWFLF++GF  GGIPWY+GAFIVL   VD+REK GYVA
Sbjct: 78  DYTVVEVRPMIEHELPCCGLGMGWFLFIMGFLFGGIPWYLGAFIVLVTSVDHREKAGYVA 137

Query: 137 CAIASVLAVIAITFGITNGVEPW 160
           C+IASV+ +IA+  G+T  +  W
Sbjct: 138 CSIASVVYLIAVMLGMTGDINIW 158

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BLAST of Cucsa.212440 vs. TrEMBL
Match: A0A0A0M051_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G448970 PE=4 SV=1)

HSP 1 Score: 345.1 bits (884), Expect = 4.5e-92
Identity = 159/159 (100.00%), Postives = 159/159 (100.00%), Query Frame = 1 

Query: 1   MSGDGKSNVVFGDPHSQYHYGTFQGVANYYTSPPQPQPQPQPQSVVGFPQPVAQPVVSGH 60
           MSGDGKSNVVFGDPHSQYHYGTFQGVANYYTSPPQPQPQPQPQSVVGFPQPVAQPVVSGH
Sbjct: 1   MSGDGKSNVVFGDPHSQYHYGTFQGVANYYTSPPQPQPQPQPQSVVGFPQPVAQPVVSGH 60

Query: 61  QPCYHGHLGYQAVPVQGYAILEGRPFQEARLPCCGIGMGWFLFMIGFFLGGIPWYVGAFI 120
           QPCYHGHLGYQAVPVQGYAILEGRPFQEARLPCCGIGMGWFLFMIGFFLGGIPWYVGAFI
Sbjct: 61  QPCYHGHLGYQAVPVQGYAILEGRPFQEARLPCCGIGMGWFLFMIGFFLGGIPWYVGAFI 120

Query: 121 VLFVRVDYREKPGYVACAIASVLAVIAITFGITNGVEPW 160
           VLFVRVDYREKPGYVACAIASVLAVIAITFGITNGVEPW
Sbjct: 121 VLFVRVDYREKPGYVACAIASVLAVIAITFGITNGVEPW 159

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BLAST of Cucsa.212440 vs. TrEMBL
Match: M5WI28_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012647mg PE=4 SV=1)

HSP 1 Score: 209.9 bits (533), Expect = 2.3e-51
Identity = 103/166 (62.05%), Postives = 118/166 (71.08%), Query Frame = 1 

Query: 1   MSGDGKSNVVFGDPHSQYHYGTFQGVANYYTSPPQPQPQPQPQSVVGFPQPVAQPVVSG- 60
           MS D K+  + GD  SQ +YGTFQGVANYY + P P P+P    VVGFPQPV  P  +G 
Sbjct: 1   MSDDSKTRGLAGDQQSQQYYGTFQGVANYYPTVPPPPPEP----VVGFPQPVPPPGSTGR 60

Query: 61  ------HQPCYHGHLGYQAVPVQGYAILEGRPFQEARLPCCGIGMGWFLFMIGFFLGGIP 120
                 HQ  +H H GYQ V   GYA++EGRP  E RLPCCG+G+GW LF+IGFFLGGIP
Sbjct: 61  PPLPPHHQHHHHHHRGYQTVT--GYAVVEGRPVHERRLPCCGMGIGWLLFIIGFFLGGIP 120

Query: 121 WYVGAFIVLFVRVDYREKPGYVACAIASVLAVIAITFGITNGVEPW 160
           WYVG FI+L VRVDYREKPGYVAC IAS+LAVIA+T G T G   W
Sbjct: 121 WYVGTFILLCVRVDYREKPGYVACTIASILAVIAVTLGATKGARTW 160

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BLAST of Cucsa.212440 vs. TrEMBL
Match: A0A067KP95_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04605 PE=4 SV=1)

HSP 1 Score: 203.8 bits (517), Expect = 1.6e-49
Identity = 102/161 (63.35%), Postives = 121/161 (75.16%), Query Frame = 1 

Query: 1   MSGDGKSNVV--FGDPHSQYHYGTFQGVANYYTSPPQPQPQPQPQSVVGFPQPVAQPVVS 60
           M+ +GK+  V   G+P +QY YGTFQGVANYY S  QP P P P +VVGFPQP+A P  S
Sbjct: 1   MTEEGKNRGVNVTGNPQTQY-YGTFQGVANYYPSVSQPAPPPPPHTVVGFPQPIA-PHGS 60

Query: 61  GHQPCYHGHLGYQAVPVQGYAILEGRPFQEARLPCCGIGMGWFLFMIGFFLGGIPWYVGA 120
              P Y  H GY +    GYA++EGRP +E RLPCCG+GMGWFLF++GFFLGGIPWYVG 
Sbjct: 61  IANPQYFPH-GYNSFAT-GYAVIEGRPVREHRLPCCGLGMGWFLFIVGFFLGGIPWYVGT 120

Query: 121 FIVLFVRVDYREKPGYVACAIASVLAVIAITFGITNGVEPW 160
           FIVL V+VDYREK GYVACAIAS+LA+IA+T G+T G   W
Sbjct: 121 FIVLCVQVDYREKAGYVACAIASILAMIAVTLGVTKGAHTW 157

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BLAST of Cucsa.212440 vs. TrEMBL
Match: A0A067GS61_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g045574mg PE=4 SV=1)

HSP 1 Score: 199.1 bits (505), Expect = 4.0e-48
Identity = 97/161 (60.25%), Postives = 116/161 (72.05%), Query Frame = 1 

Query: 1   MSGDGKSNVVFGDPHSQYHYGTFQGVANYYTSPPQPQPQPQPQSVVGFPQPVAQPV--VS 60
           M+ + K   +  +P ++ +YGTFQGV NYY     P PQ  PQ VVG PQP+  P   +S
Sbjct: 1   MNDEQKGRGLISNPQNKNYYGTFQGVVNYYP----PFPQAPPQQVVGLPQPIPPPGPGIS 60

Query: 61  GHQPCYHGHLGYQAVPVQGYAILEGRPFQEARLPCCGIGMGWFLFMIGFFLGGIPWYVGA 120
            H P  +GH GYQ +P  GYA++EGRP  E RLPCCGIGMGWFLF+IGFFLGGIPWYVGA
Sbjct: 61  NH-PLLYGH-GYQTIP--GYAVVEGRPLGEYRLPCCGIGMGWFLFIIGFFLGGIPWYVGA 120

Query: 121 FIVLFVRVDYREKPGYVACAIASVLAVIAITFGITNGVEPW 160
           FI L  +VDYREKPGY+ACAIASVL +IA+T G+T G   W
Sbjct: 121 FIALCAQVDYREKPGYIACAIASVLTMIALTLGVTKGAHTW 153

[Close]
BLAST of Cucsa.212440 vs. TrEMBL
Match: V4UKQ3_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10017045mg PE=4 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 5.2e-48
Identity = 97/161 (60.25%), Postives = 116/161 (72.05%), Query Frame = 1 

Query: 1   MSGDGKSNVVFGDPHSQYHYGTFQGVANYYTSPPQPQPQPQPQSVVGFPQPVAQPV--VS 60
           M+ + K   +  +P +Q +YGTFQGV NY+     P PQ  PQ VVG PQP+  P   +S
Sbjct: 1   MNDEQKGRGLISNPQNQNYYGTFQGVVNYHP----PFPQAPPQQVVGLPQPIPPPGPGIS 60

Query: 61  GHQPCYHGHLGYQAVPVQGYAILEGRPFQEARLPCCGIGMGWFLFMIGFFLGGIPWYVGA 120
            H P  +GH GYQ +P  GYA++EGRP  E RLPCCGIGMGWFLF+IGFFLGGIPWYVGA
Sbjct: 61  NH-PLLYGH-GYQTIP--GYAVVEGRPLGEHRLPCCGIGMGWFLFIIGFFLGGIPWYVGA 120

Query: 121 FIVLFVRVDYREKPGYVACAIASVLAVIAITFGITNGVEPW 160
           FI L  +VDYREKPGY+ACAIASVL +IA+T G+T G   W
Sbjct: 121 FIALCAQVDYREKPGYIACAIASVLTMIALTLGVTKGAHTW 153

[Close]
BLAST of Cucsa.212440 vs. TAIR10
Match: AT1G17080.1 (AT1G17080.1 Ribosomal protein L18ae family)

HSP 1 Score: 169.9 bits (429), Expect = 1.3e-42
Identity = 85/158 (53.80%), Postives = 107/158 (67.72%), Query Frame = 1 

Query: 4   DGKSNVVFGDPHSQYH-YGTFQGVANYYTSPPQPQPQPQPQSVVGFPQPVAQPVVSGHQP 63
           + KS     +  +Q+H YGTFQGV+NY   PP     P    V GFPQP A P V     
Sbjct: 6   EDKSKGFASEEGNQHHQYGTFQGVSNY---PPPQNSAP----VTGFPQPSAPPGVYDSGA 65

Query: 64  CYHGHLGYQAVPVQGYAILEGRPFQEARLPCCGIGMGWFLFMIGFFLGGIPWYVGAFIVL 123
            Y+ H GYQ VPV G  + EGRP ++ RLPCCGIG+GWFLF++GFFLG IPWYVG FI++
Sbjct: 66  PYYAH-GYQTVPVHG-GVAEGRPVRQRRLPCCGIGLGWFLFIVGFFLGAIPWYVGLFIMM 125

Query: 124 F-VRVDYREKPGYVACAIASVLAVIAITFGITNGVEPW 160
           F  R+DYREKPGY+AC IA++LA IA+  G++ G + W
Sbjct: 126 FGRRIDYREKPGYIACTIAAILATIAVILGVSKGADDW 154

[Close]
BLAST of Cucsa.212440 vs. TAIR10
Match: AT1G53560.1 (AT1G53560.1 Ribosomal protein L18ae family)

HSP 1 Score: 148.3 bits (373), Expect = 4.1e-36
Identity = 72/140 (51.43%), Postives = 89/140 (63.57%), Query Frame = 1 

Query: 20  YGTFQGVANYYTSPPQPQPQPQPQSVVGFPQPVAQPVVSGHQPCYHGHLGYQAVPVQGYA 79
           YGTFQGV  Y   P  P P P    V+G PQP   P    H    H ++  +   V GY 
Sbjct: 16  YGTFQGVPTY-PPPSYPHP-PSHHPVIGIPQPSPPPGSPHHDISVHQYI-QEHQTVAGYP 75

Query: 80  ILEGRPFQEARLPCCGIGMGWFLFMIGFFLGGIPWYVGAFIVLFVRVDYREKPGYVACAI 139
           + +GRP ++ RLPCCG+G+GWFLF+IGF LG IPWYVG FI++  R+D REKPGYVAC I
Sbjct: 76  VSQGRPARQNRLPCCGLGLGWFLFIIGFLLGAIPWYVGVFILVCARIDPREKPGYVACTI 135

Query: 140 ASVLAVIAITFGITNGVEPW 160
           A+V+A I I FG+  G   W
Sbjct: 136 AAVVATITIVFGVMGGRGVW 152

[Close]
BLAST of Cucsa.212440 vs. TAIR10
Match: AT1G29970.2 (AT1G29970.2 60S ribosomal protein L18A-1)

HSP 1 Score: 132.1 bits (331), Expect = 3.0e-31
Identity = 66/124 (53.23%), Postives = 80/124 (64.52%), Query Frame = 1 

Query: 17  QYHYGTFQGVANYYTSPPQPQPQPQPQSVVGFPQPVAQPVVSGHQPCYHGHLGYQAVPVQ 76
           QY+YGTFQGVAN+ T  P PQ       +  FP    Q +  GH    +   G+  V V 
Sbjct: 18  QYYYGTFQGVANFPTPTPPPQFMQPQHPITTFPGHAYQNL-QGHGGGVNYAQGFPVV-VP 77

Query: 77  GYAILEGRPFQEARLPCCGIGMGWFLFMIGFFLGGIPWYVGAFIVLFVRVDYREKPGYVA 136
            Y ++E RP  E  LPCCG+GMGWFLF++GF  GGIPWY+GAFIVL   VD+REK GYVA
Sbjct: 78  DYTVVEVRPMIEHELPCCGLGMGWFLFIMGFLFGGIPWYLGAFIVLVTSVDHREKAGYVA 137

Query: 137 CAIA 141
           C+IA
Sbjct: 138 CSIA 139

[Close]
BLAST of Cucsa.212440 vs. TAIR10
Match: AT3G14595.1 (AT3G14595.1 Ribosomal protein L18ae family)

HSP 1 Score: 108.2 bits (269), Expect = 4.7e-24
Identity = 66/158 (41.77%), Postives = 84/158 (53.16%), Query Frame = 1 

Query: 3   GDGKSNVVFGD-PHSQYHYGTFQGVANYYTSPPQPQPQPQPQSVVGFPQPVAQPVVSGHQ 62
           GD K+  V  D  H Q     FQGV+NY   PPQ QP        G+PQP AQP      
Sbjct: 5   GDDKNRSVVTDHQHQQQPPPPFQGVSNY---PPQQQPP-----ATGYPQP-AQPYA---- 64

Query: 63  PCYHGHLGYQAVPVQGYAILEGRPFQEARLPCCGIGMGWFLFMIGFFLGGIPWYVGAFIV 122
                         QGY +   RP +  R  CCGIG+GW LF++GFF   +PWY+G F++
Sbjct: 65  --------------QGYVVNGVRPTEHGR--CCGIGIGWVLFILGFFFA-LPWYIGFFLL 124

Query: 123 LFVRVDYREKPGYVACAIASVLAVIAITFGITNGVEPW 160
           LF R + RE+PGY+ACA+ +V A I + FG   G   W
Sbjct: 125 LFSR-NPRERPGYIACAVGAVFATIIVIFGTVRGSGVW 131

[Close]
BLAST of Cucsa.212440 vs. TAIR10
Match: AT1G54217.2 (AT1G54217.2 Ribosomal protein L18ae family)

HSP 1 Score: 51.2 bits (121), Expect = 6.8e-07
Identity = 25/64 (39.06%), Postives = 37/64 (57.81%), Query Frame = 1 

Query: 91  LPCCGIGMGWFLFMIGFFLGGIPWYVGAFIVL--FVRVDYREKPGYVACAIASVLAVIAI 150
           LPC G G+GWF F++GF      WYV  F+ L  +   D RE+ G  A AIA+++  +A+
Sbjct: 33  LPCFGFGIGWFSFLLGFVF-PFAWYVATFLYLISYYHRDPRERSGLAASAIAALIFSVAL 92

Query: 151 TFGI 153
              +
Sbjct: 93  VITV 95

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BLAST of Cucsa.212440 vs. NCBI nr
Match: gi|449459346|ref|XP_004147407.1| (PREDICTED: 60S ribosomal protein L18a-like protein [Cucumis sativus])

HSP 1 Score: 345.1 bits (884), Expect = 6.4e-92
Identity = 159/159 (100.00%), Postives = 159/159 (100.00%), Query Frame = 1 

Query: 1   MSGDGKSNVVFGDPHSQYHYGTFQGVANYYTSPPQPQPQPQPQSVVGFPQPVAQPVVSGH 60
           MSGDGKSNVVFGDPHSQYHYGTFQGVANYYTSPPQPQPQPQPQSVVGFPQPVAQPVVSGH
Sbjct: 1   MSGDGKSNVVFGDPHSQYHYGTFQGVANYYTSPPQPQPQPQPQSVVGFPQPVAQPVVSGH 60

Query: 61  QPCYHGHLGYQAVPVQGYAILEGRPFQEARLPCCGIGMGWFLFMIGFFLGGIPWYVGAFI 120
           QPCYHGHLGYQAVPVQGYAILEGRPFQEARLPCCGIGMGWFLFMIGFFLGGIPWYVGAFI
Sbjct: 61  QPCYHGHLGYQAVPVQGYAILEGRPFQEARLPCCGIGMGWFLFMIGFFLGGIPWYVGAFI 120

Query: 121 VLFVRVDYREKPGYVACAIASVLAVIAITFGITNGVEPW 160
           VLFVRVDYREKPGYVACAIASVLAVIAITFGITNGVEPW
Sbjct: 121 VLFVRVDYREKPGYVACAIASVLAVIAITFGITNGVEPW 159

[Close]
BLAST of Cucsa.212440 vs. NCBI nr
Match: gi|659068354|ref|XP_008444018.1| (PREDICTED: 60S ribosomal protein L18a-like protein [Cucumis melo])

HSP 1 Score: 340.9 bits (873), Expect = 1.2e-90
Identity = 157/159 (98.74%), Postives = 158/159 (99.37%), Query Frame = 1 

Query: 1   MSGDGKSNVVFGDPHSQYHYGTFQGVANYYTSPPQPQPQPQPQSVVGFPQPVAQPVVSGH 60
           MSGDGKS+VVFGDPHSQYHYGTFQGVANYYTSPPQPQPQPQPQSVVGFPQPVA PVVSGH
Sbjct: 1   MSGDGKSSVVFGDPHSQYHYGTFQGVANYYTSPPQPQPQPQPQSVVGFPQPVAPPVVSGH 60

Query: 61  QPCYHGHLGYQAVPVQGYAILEGRPFQEARLPCCGIGMGWFLFMIGFFLGGIPWYVGAFI 120
           QPCYHGHLGYQAVPVQGYAILEGRPFQEARLPCCGIGMGWFLFMIGFFLGGIPWYVGAFI
Sbjct: 61  QPCYHGHLGYQAVPVQGYAILEGRPFQEARLPCCGIGMGWFLFMIGFFLGGIPWYVGAFI 120

Query: 121 VLFVRVDYREKPGYVACAIASVLAVIAITFGITNGVEPW 160
           VLFVRVDYREKPGYVACAIASVLAVIAITFGITNGVEPW
Sbjct: 121 VLFVRVDYREKPGYVACAIASVLAVIAITFGITNGVEPW 159

[Close]
BLAST of Cucsa.212440 vs. NCBI nr
Match: gi|1009106944|ref|XP_015877083.1| (PREDICTED: 60S ribosomal protein L18a-like protein [Ziziphus jujuba])

HSP 1 Score: 220.7 bits (561), Expect = 1.8e-54
Identity = 101/159 (63.52%), Postives = 117/159 (73.58%), Query Frame = 1 

Query: 1   MSGDGKSNVVFGDPHSQYHYGTFQGVANYYTSPPQPQPQPQPQSVVGFPQPVAQPVVSGH 60
           MS D KS  V  D  SQYHYGTFQGVANYY  PP P  QP PQ VVGFPQPV     + H
Sbjct: 1   MSDDSKSRGVAADQQSQYHYGTFQGVANYYPPPPPPVSQPPPQPVVGFPQPVPPIGATAH 60

Query: 61  QPCYHGHLGYQAVPVQGYAILEGRPFQEARLPCCGIGMGWFLFMIGFFLGGIPWYVGAFI 120
               H ++GYQ V   GYA++EGRP +E RLPCCG+G+GW LF+ GFFLGGIPWY+G FI
Sbjct: 61  PSYPHHYVGYQTVT--GYAVVEGRPVRERRLPCCGLGVGWLLFLTGFFLGGIPWYIGTFI 120

Query: 121 VLFVRVDYREKPGYVACAIASVLAVIAITFGITNGVEPW 160
           +L VRVD+REKPGYVAC IAS+LA+IA+T G+T G   W
Sbjct: 121 ILCVRVDHREKPGYVACTIASILAIIAVTLGLTKGAHAW 157

[Close]
BLAST of Cucsa.212440 vs. NCBI nr
Match: gi|595875425|ref|XP_007212180.1| (hypothetical protein PRUPE_ppa012647mg [Prunus persica])

HSP 1 Score: 209.9 bits (533), Expect = 3.2e-51
Identity = 103/166 (62.05%), Postives = 118/166 (71.08%), Query Frame = 1 

Query: 1   MSGDGKSNVVFGDPHSQYHYGTFQGVANYYTSPPQPQPQPQPQSVVGFPQPVAQPVVSG- 60
           MS D K+  + GD  SQ +YGTFQGVANYY + P P P+P    VVGFPQPV  P  +G 
Sbjct: 1   MSDDSKTRGLAGDQQSQQYYGTFQGVANYYPTVPPPPPEP----VVGFPQPVPPPGSTGR 60

Query: 61  ------HQPCYHGHLGYQAVPVQGYAILEGRPFQEARLPCCGIGMGWFLFMIGFFLGGIP 120
                 HQ  +H H GYQ V   GYA++EGRP  E RLPCCG+G+GW LF+IGFFLGGIP
Sbjct: 61  PPLPPHHQHHHHHHRGYQTVT--GYAVVEGRPVHERRLPCCGMGIGWLLFIIGFFLGGIP 120

Query: 121 WYVGAFIVLFVRVDYREKPGYVACAIASVLAVIAITFGITNGVEPW 160
           WYVG FI+L VRVDYREKPGYVAC IAS+LAVIA+T G T G   W
Sbjct: 121 WYVGTFILLCVRVDYREKPGYVACTIASILAVIAVTLGATKGARTW 160

[Close]
BLAST of Cucsa.212440 vs. NCBI nr
Match: gi|643730530|gb|KDP37962.1| (hypothetical protein JCGZ_04605 [Jatropha curcas])

HSP 1 Score: 203.8 bits (517), Expect = 2.3e-49
Identity = 102/161 (63.35%), Postives = 121/161 (75.16%), Query Frame = 1 

Query: 1   MSGDGKSNVV--FGDPHSQYHYGTFQGVANYYTSPPQPQPQPQPQSVVGFPQPVAQPVVS 60
           M+ +GK+  V   G+P +QY YGTFQGVANYY S  QP P P P +VVGFPQP+A P  S
Sbjct: 1   MTEEGKNRGVNVTGNPQTQY-YGTFQGVANYYPSVSQPAPPPPPHTVVGFPQPIA-PHGS 60

Query: 61  GHQPCYHGHLGYQAVPVQGYAILEGRPFQEARLPCCGIGMGWFLFMIGFFLGGIPWYVGA 120
              P Y  H GY +    GYA++EGRP +E RLPCCG+GMGWFLF++GFFLGGIPWYVG 
Sbjct: 61  IANPQYFPH-GYNSFAT-GYAVIEGRPVREHRLPCCGLGMGWFLFIVGFFLGGIPWYVGT 120

Query: 121 FIVLFVRVDYREKPGYVACAIASVLAVIAITFGITNGVEPW 160
           FIVL V+VDYREK GYVACAIAS+LA+IA+T G+T G   W
Sbjct: 121 FIVLCVQVDYREKAGYVACAIASILAMIAVTLGVTKGAHTW 157

The following BLAST results are available for this feature:
BLAST of Cucsa.212440 vs. Swiss-Prot
Match NameE-valueIdentityDescription
R18AL_ARATH1.2e-3451.0560S ribosomal protein L18a-like protein OS=Arabidopsis thaliana GN=At1g29970 PE=... [more]
BLAST of Cucsa.212440 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0M051_CUCSA4.5e-92100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G448970 PE=4 SV=1[more]
M5WI28_PRUPE2.3e-5162.05Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012647mg PE=4 SV=1[more]
A0A067KP95_JATCU1.6e-4963.35Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04605 PE=4 SV=1[more]
A0A067GS61_CITSI4.0e-4860.25Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g045574mg PE=4 SV=1[more]
V4UKQ3_9ROSI5.2e-4860.25Uncharacterized protein OS=Citrus clementina GN=CICLE_v10017045mg PE=4 SV=1[more]
BLAST of Cucsa.212440 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G17080.11.3e-4253.80 Ribosomal protein L18ae family[more]
AT1G53560.14.1e-3651.43 Ribosomal protein L18ae family[more]
AT1G29970.23.0e-3153.23 60S ribosomal protein L18A-1[more]
AT3G14595.14.7e-2441.77 Ribosomal protein L18ae family[more]
AT1G54217.26.8e-0739.06 Ribosomal protein L18ae family[more]
BLAST of Cucsa.212440 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449459346|ref|XP_004147407.1|6.4e-92100.00PREDICTED: 60S ribosomal protein L18a-like protein [Cucumis sativus][more]
gi|659068354|ref|XP_008444018.1|1.2e-9098.74PREDICTED: 60S ribosomal protein L18a-like protein [Cucumis melo][more]
gi|1009106944|ref|XP_015877083.1|1.8e-5463.52PREDICTED: 60S ribosomal protein L18a-like protein [Ziziphus jujuba][more]
gi|595875425|ref|XP_007212180.1|3.2e-5162.05hypothetical protein PRUPE_ppa012647mg [Prunus persica][more]
gi|643730530|gb|KDP37962.1|2.3e-4963.35hypothetical protein JCGZ_04605 [Jatropha curcas][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.212440.1Cucsa.212440.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR1005260S RIBOSOMAL PROTEIN L18Acoord: 69..159
score: 1.1
NoneNo IPR availablePANTHERPTHR10052:SF9SUBFAMILY NOT NAMEDcoord: 69..159
score: 1.1

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cucsa.212440Cla019609Watermelon (97103) v1cgywmB408
Cucsa.212440Csa1G448970Cucumber (Chinese Long) v2cgycuB315
Cucsa.212440MELO3C002714Melon (DHL92) v3.5.1cgymeB375
Cucsa.212440ClCG03G007100Watermelon (Charleston Gray)cgywcgB388
Cucsa.212440CSPI01G21440Wild cucumber (PI 183967)cgycpiB328
Cucsa.212440CmaCh13G005590Cucurbita maxima (Rimu)cgycmaB0612
Cucsa.212440Lsi02G008640Bottle gourd (USVL1VR-Ls)cgylsiB358
Cucsa.212440MELO3C002714.2Melon (DHL92) v3.6.1cgymedB373
Cucsa.212440CsaV3_1G032680Cucumber (Chinese Long) v3cgycucB333
Cucsa.212440Cla97C03G058330Watermelon (97103) v2cgywmbB390
Cucsa.212440Bhi08G001723Wax gourdcgywgoB440
Cucsa.212440Carg19922Silver-seed gourdcarcgyB0913
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.212440Melon (DHL92) v3.6.1cgymedB376
Cucsa.212440Silver-seed gourdcarcgyB1076
Cucsa.212440Silver-seed gourdcarcgyB0184
Cucsa.212440Silver-seed gourdcarcgyB0626
Cucsa.212440Cucumber (Chinese Long) v3cgycucB334
Cucsa.212440Watermelon (97103) v2cgywmbB387
Cucsa.212440Watermelon (97103) v2cgywmbB389
Cucsa.212440Wax gourdcgywgoB437
Cucsa.212440Wax gourdcgywgoB439
Cucsa.212440Cucumber (Gy14) v1cgycgyB007
Cucsa.212440Cucurbita maxima (Rimu)cgycmaB0614
Cucsa.212440Cucurbita maxima (Rimu)cgycmaB0618
Cucsa.212440Cucurbita maxima (Rimu)cgycmaB0619
Cucsa.212440Cucurbita moschata (Rifu)cgycmoB0614
Cucsa.212440Cucurbita moschata (Rifu)cgycmoB0616
Cucsa.212440Cucurbita moschata (Rifu)cgycmoB0619
Cucsa.212440Cucurbita moschata (Rifu)cgycmoB0620
Cucsa.212440Wild cucumber (PI 183967)cgycpiB329
Cucsa.212440Cucumber (Chinese Long) v2cgycuB316
Cucsa.212440Melon (DHL92) v3.5.1cgymeB378
Cucsa.212440Watermelon (Charleston Gray)cgywcgB384
Cucsa.212440Watermelon (97103) v1cgywmB413
Cucsa.212440Watermelon (97103) v1cgywmB411
Cucsa.212440Cucurbita pepo (Zucchini)cgycpeB0585
Cucsa.212440Cucurbita pepo (Zucchini)cgycpeB0586
Cucsa.212440Cucurbita pepo (Zucchini)cgycpeB0588
Cucsa.212440Cucurbita pepo (Zucchini)cgycpeB0590
Cucsa.212440Bottle gourd (USVL1VR-Ls)cgylsiB355
Cucsa.212440Bottle gourd (USVL1VR-Ls)cgylsiB357