ClCG03G007100 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG03G007100
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	60S ribosomal protein L18A-like
Location	CG_Chr03 : 8064146 .. 8068619 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAAAATCACCGCCTTATTAGAAACCGGAGACACTCATTCTCTTTCCGCCAAGCTCCGTCGCTTCCAAATTTCCCGGCGAAATCGCAGACGAAGAAGAGAAAAGCGACGACGACACCCTCGCCGTCGCCTTGGTATTCAAGAAACCTTCTCTAATTCTTCTTCTGCAGATAATATGACTGGCGACGGGAAAAGCAGCGCGGTATTTGGCGATCCACAGACTCAATACCATTACGGTACGTTTCAAGGTGTCGCAAACTATTATTCTTCTGCCCCACAACCGCAGCCCCAATCTGTCGTCGGTTTCCCTCAGCCGGTTGCACCGCCCGCAGTTTCTGGCCACCATCCATGTTACCATGGACATTTGGGTTACCAAGCCGTTCCTGGTAAATAACTCCATTCGTCGATGTTCTTTTTATCATGTTCTTCAATTTGGAGGATTTTGTTATGGTATGATTTCTGGTAGATTGATGACGAATTCAGAATCTAAAGATCAATATCGTGGTTCTTCCTAGGAGTTTGTGCAGATTTTGCGTTTAAATATTAGTTTGAAGGGCGGATACGAATTGTTTACTTTATTTAGGGATTGACGGTGTTTCGTATGGTCTTTGCTAATGATCATGACGGTTTTGCTTTGTTATTGGTATCCGTTGGTTTGATAAGTATTAAATGAGTCTATGATGCTCATTGTGGTTTATAATTGATTTGCTTTATCTGATGTTCCGGGCCTCAGATGGGTTATTGATTCACTGATATGAATGTATGAATAATATCTCAATGTTTAGATTGAATATCGCCCTTAGTAATGTCTAGCGTCGTGAGAAATAAGGTTAAAAGTTATGTTCAGGATTAATAGGGAGTCGGGGACTGCTTTCTAGCTTATGACAATTTATTTGGGAACAAGGAACATTTTCTAAATGCATGAGGATTTGCAAGAGAGAAAGGAGGAGAGAGATTGAGTTTGCTACCCTCTTTGTCAATGGTGATTACAAAGTTCTGATCGACTTGAATTTTATTAGAAGAACAATTGCAGAACTCTCTGCTTTGAAATTACCTGTACCATCTAGCTTCCAAAACTAGAGTGCTCCCTTAAAAATTTAACACATCTTCGAACTTAATTGTTCTAATGGTCCCTTTCATTCCACATCTCAATTCTTCCATATTTAGCATGGAATTCTCCCGAAGATTATGGAGAAGGGTGGTCTCTTGAGCGTGCATAATCACTTATTTTCTGCATCTAAGGCATCTAGGGAAATATCCTAGTAGAGAGAGAAGAGTCTAAGGAGATATCTGAAGAAGGCCTGTCCTTGGATGGTGGCTAATCTAACTAATTGGAAGACAGTGTCTCTTCAGCTGGAGGATGGTCTGGATGTTACTAGAGCCATTTAATGGGATGTATTGTTAGAGAGAACGGAAGAGTCTTTTCAATTGAGGAAAAGATTGTTGGAAAACTGTGTTTTTGTTTCCTTCTCATGTAGAGCCTTGCACGAGGTCTTCTCGAATTATTCTCTTTACATGGTTGGTGCCAATGGGGGAGTTCCTCTTGTTCTTTCCCCTATTTTCCCTTTCCAACTCTTTTTGCTTGTAGGCACTTGCCTTATAATGATGGTCCAAAAGCAGCTGGATCATCAAATCTCATTTATTATTTAGGGAGGGCCCGTTGGAAATTAAAAGAACTTGAGTAGTTCCATTACCACTTTTTGGAAGGCCCACACATCATGGATTCATGATGACCTGTATCCTGAGCTTCATTACTGTTCTTGCATCACATGTAATGATGCACCAAGTATCGTAAATACTCATATTCCCCCCCCACCCCCGGGATTGCTTAGAATGTGTTTATCAAGAAAGAAATGGACTGTAGTTGCTCAATGCTCCCAATTTAAACAGCGTATAAATTTCCTCCTTCAATTTTATTTTTGGTAGAACTGACTATTGAGATTAAATCACAAAAGTGAAAGGGGTATCACTTGCCAGATATTTCTATCAACATGTCTTCCTAGTGAGATGTATCACCCAGCATCTTGCCCATTGCAAGTATTCTCCAAATCAGTGACAATAAGATTCTGTAATTCAGTTGCTTAATATTATTGAGGTTAATTAAAGATGGACGTTGAAATTTCAATGCCTTGTTCTTAGATTATATTGCAAGATTATCAATCATGTCATCTGAGGTAAAATGAGCAGCATATAGATTCCATTTGAAGAGTGTCACTGTCAGTTATGGACCGTGGTTTGGCATGTCAATTAGGTAGGATGTCTGCACGACAATCTATTTCTCATGCTTCTAGGAAAAGCCTTACAACACATGTCTATCGTGTCACCTAATGATTTGGTTGGTTCATGTAAATTCTATGCAAGTGTCCATTTTTAACCGGTTGGCTAATTTCGTTTGTAGAGTGACAGTTACGGACAGTGTTATGAACTTTGGAATATGGTTTTGGCATGCCAATTAGACAGGATGTCTGCTAAATAATCTATTTCTCATGGTTCCAGGAAGCGATGTTCACCTCATGATTTGGTTCGTTCATGTTAAACCTATGCAAGCATCTAATCTATTTTTAATTTTCTAATGAAATAACTTCTGAAAAAACTCAAAAGTTTAATTCGGTCAACCATGCACGTGTTTATTTATGGGCGCATATGCATATGAATTTACATCTTTATGCAGTCATGCTCAATGGTACGGATGCCTTTATCCATCATCCGCCTTAATGCTTTTATTGGTTGTGGTTCAAGGTTATGCCATTCTTGAGGGAAGACCTTTTCAAGAAGCCCGTCTTCCTTGCTGTGGCATTGGCATGGGTTGGTTCTTGTAAGTTAATATTGTGACATCCCACTTCTCTACACTCATTCCCAACATGTTGATAATTAAGAAAAATCATTGTTTTGCCAGGTTTATGATTGGCTTCTTTCTTGGTGGCATTCCCTGGTATGTTGGAGCTTTTATCGTACTCTTTGTTCGGGTGGATTACCGAGAAAAACCTGGATATGTTGCATGTGCAATTGCTGTAAGTAACCATTATACAAATATGATTTATCATTAACTATCCTCAAAAATATGATTTCTCACCTATCTTCAATAATAATTATACTATTACTCCAAGTAGTACTCAAAATGATGAAGATTTGGGACGTTTTGAGACGTTCTCTAGTCTTGGGTTCAAGGAAAATTTATTAATTATTAACTGCTTTTAAAGCTGACCCAAGAATTTATGGAGGTGGGAAATGAGCATATACTAATATACTGATATGAGTGAGGAGTTGAGCATCCAACAATTTGCTTCAAATTAAATAAGGGCAAATATCAATTTGTACCCCTAAACTTTTGGAGTTATATCAATTGGAACTTTGAACTAACAATTGTATTAATTTAAACTCCGAACTTTTGTAACTGTATCCATTTACACCTCCATTATGTTTCATTTGGAAAAACTTTATGTGAAACTTAATTGTATTAATTAAACCCCTACCCTTTCATCAATGAATCAATTTAGACCCTTAGACAGAATTTCCTTTGAAAATCGTCGTGCATGCATTACACTCCGATTTGTTAAAGGGACATATGAAGAAGTCTGCACATTTGAGAATTAATGCATGGATGGTTTTCAAATGTAATCATAATGGAAGGTTTAAATTAGTTGACTTAGGAAAATTTTGGAATTTAATTGACTCAAGTTATAAGTTTCACACGATATTAGCCAAACGTGGTGGAGAGTGTAAATTGATTCACTTAACAAAGTTTAGGGTTTAAAATGAGACAATTATTAGTTCAAGGTTTAAATTAATACAACTCCTAAAGTTTAGGAGATAAGTTGATATTTGCCTAATTAATAATTATGAAAAACCTGAAAATTGACCCTAATTTTATCCTCAGCTGGAAGTTTTAGGCCCCCATTCTGCCTGCTGTTCCCTTTTCTTGGACTTGATTGTGTGCTGCTAGGATGTTACGATTTCCATCTACTGATTTTGAAATTGTGCTTCATTTTTGCTTGCTCAGTCAGTTCTTGCCGTCGTTGCTATTACGTTTGGGATCACCAAAGGAGTTGACCCCTGGTGAATGAGACATATGCAGAATGGTCTGGCTTGCCGTGTCACCCCCCTGCATCGACGAAAACAACGGTTGGGATACTGTAATTAGCTTTGAAATTGTTATTCTGTCAGCTTCTATTTATCAACTTATTGGCTTCCTTTACCATATACCGACATCTTCCTGACTTGCCAAATATGGAATGAAATGTTAATAGATCGAAGTCAAAATTATTAGCTTTATTGGAAGGTTTTTTCTCTTTTCTTTTTAGTTTTAAATAGCTATAAGTGTCAGGATCAGTTTGTACATGTCTCAGTCATTCTTATAAGACAATCACTCGATTCTATTATATTTGGTTGTCAAATAGACCTATGTTTTGAACCTATTTCCTCTAAATGAGGGCCAGTAGGCTTTATTCGGCCACCTACTCCATTAACTCAATTTATC

mRNA sequence

GAAAATCACCGCCTTATTAGAAACCGGAGACACTCATTCTCTTTCCGCCAAGCTCCGTCGCTTCCAAATTTCCCGGCGAAATCGCAGACGAAGAAGAGAAAAGCGACGACGACACCCTCGCCGTCGCCTTGGTATTCAAGAAACCTTCTCTAATTCTTCTTCTGCAGATAATATGACTGGCGACGGGAAAAGCAGCGCGGTATTTGGCGATCCACAGACTCAATACCATTACGGTACGTTTCAAGGTGTCGCAAACTATTATTCTTCTGCCCCACAACCGCAGCCCCAATCTGTCGTCGGTTTCCCTCAGCCGGTTGCACCGCCCGCAGTTTCTGGCCACCATCCATGTTACCATGGACATTTGGGTTACCAAGCCGTTCCTGGATGTCTGCTAAATAATCTATTTCTCATGGTTCCAGGAAGCGATGTTCACCTCATGATTTGTCATGCTCAATGGTACGGATGCCTTTATCCATCATCCGCCTTAATGCTTTTATTGGTTGTGGTTCAAGGTTATGCCATTCTTGAGGGAAGACCTTTTCAAGAAGCCCGTCTTCCTTGCTGTGGCATTGGCATGGGTTGGTTCTTGTTTATGATTGGCTTCTTTCTTGGTGGCATTCCCTGGTATGTTGGAGCTTTTATCGTACTCTTTGTTCGGGTGGATTACCGAGAAAAACCTGGATATGTTGCATGTGCAATTGCTTCAGTTCTTGCCGTCGTTGCTATTACGTTTGGGATCACCAAAGGAGTTGACCCCTGGTGAATGAGACATATGCAGAATGGTCTGGCTTGCCGTGTCACCCCCCTGCATCGACGAAAACAACGGTTGGGATACTGTAATTAGCTTTGAAATTGTTATTCTGTCAGCTTCTATTTATCAACTTATTGGCTTCCTTTACCATATACCGACATCTTCCTGACTTGCCAAATATGGAATGAAATGTTAATAGATCGAAGTCAAAATTATTAGCTTTATTGGAAGGTTTTTTCTCTTTTCTTTTTAGTTTTAAATAGCTATAAGTGTCAGGATCAGTTTGTACATGTCTCAGTCATTCTTATAAGACAATCACTCGATTCTATTATATTTGGTTGTCAAATAGACCTATGTTTTGAACCTATTTCCTCTAAATGAGGGCCAGTAGGCTTTATTCGGCCACCTACTCCATTAACTCAATTTATC

Coding sequence (CDS)

ATGACTGGCGACGGGAAAAGCAGCGCGGTATTTGGCGATCCACAGACTCAATACCATTACGGTACGTTTCAAGGTGTCGCAAACTATTATTCTTCTGCCCCACAACCGCAGCCCCAATCTGTCGTCGGTTTCCCTCAGCCGGTTGCACCGCCCGCAGTTTCTGGCCACCATCCATGTTACCATGGACATTTGGGTTACCAAGCCGTTCCTGGATGTCTGCTAAATAATCTATTTCTCATGGTTCCAGGAAGCGATGTTCACCTCATGATTTGTCATGCTCAATGGTACGGATGCCTTTATCCATCATCCGCCTTAATGCTTTTATTGGTTGTGGTTCAAGGTTATGCCATTCTTGAGGGAAGACCTTTTCAAGAAGCCCGTCTTCCTTGCTGTGGCATTGGCATGGGTTGGTTCTTGTTTATGATTGGCTTCTTTCTTGGTGGCATTCCCTGGTATGTTGGAGCTTTTATCGTACTCTTTGTTCGGGTGGATTACCGAGAAAAACCTGGATATGTTGCATGTGCAATTGCTTCAGTTCTTGCCGTCGTTGCTATTACGTTTGGGATCACCAAAGGAGTTGACCCCTGGTGA

Protein sequence

MTGDGKSSAVFGDPQTQYHYGTFQGVANYYSSAPQPQPQSVVGFPQPVAPPAVSGHHPCYHGHLGYQAVPGCLLNNLFLMVPGSDVHLMICHAQWYGCLYPSSALMLLLVVVQGYAILEGRPFQEARLPCCGIGMGWFLFMIGFFLGGIPWYVGAFIVLFVRVDYREKPGYVACAIASVLAVVAITFGITKGVDPW

Homology

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BLAST of ClCG03G007100 vs. Swiss-Prot
Match: R18AL_ARATH (60S ribosomal protein L18a-like protein OS=Arabidopsis thaliana GN=At1g29970 PE=2 SV=2)

HSP 1 Score: 134.8 bits (338), Expect = 1.0e-30
Identity = 80/185 (43.24%), Postives = 100/185 (54.05%), Query Frame = 1


Query: 15  QTQYHYGTFQGVANYYSSAPQPQPQSVVGFPQPVAPPA-VSGHHPC--YHGHLGYQAVPG 74
           Q QY+YGTFQGVAN               FP P  PP  +   HP   + GH  YQ + G
Sbjct: 16  QHQYYYGTFQGVAN---------------FPTPTPPPQFMQPQHPITTFPGH-AYQNLQG 75

Query: 75  CLLNNLFLMVPGSDVHLMICHAQWYGCLYPSSALMLLLVVVQGYAILEGRPFQEARLPCC 134
                      G  V+    +AQ +             VVV  Y ++E RP  E  LPCC
Sbjct: 76  ----------HGGGVN----YAQGFP------------VVVPDYTVVEVRPMIEHELPCC 135

Query: 135 GIGMGWFLFMIGFFLGGIPWYVGAFIVLFVRVDYREKPGYVACAIASVLAVVAITFGITK 194
           G+GMGWFLF++GF  GGIPWY+GAFIVL   VD+REK GYVAC+IASV+ ++A+  G+T 
Sbjct: 136 GLGMGWFLFIMGFLFGGIPWYLGAFIVLVTSVDHREKAGYVACSIASVVYLIAVMLGMTG 158

Query: 195 GVDPW 197
            ++ W
Sbjct: 196 DINIW 158

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BLAST of ClCG03G007100 vs. TrEMBL
Match: A0A0A0M051_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G448970 PE=4 SV=1)

HSP 1 Score: 231.9 bits (590), Expect = 6.8e-58
Identity = 125/200 (62.50%), Postives = 134/200 (67.00%), Query Frame = 1


Query: 1   MTGDGKSSAVFGDPQTQYHYGTFQGVANYYSSAPQPQPQSVVGFPQPVA----PPAVSGH 60
           M+GDGKS+ VFGDP +QYHYGTFQGVANYY+S PQPQPQ     PQP +    P  V+  
Sbjct: 1   MSGDGKSNVVFGDPHSQYHYGTFQGVANYYTSPPQPQPQ-----PQPQSVVGFPQPVA-- 60

Query: 61  HPCYHGHLGYQAVPGCLLNNLFLMVPGSDVHLMICHAQWYGCLYPSSALMLLLVVVQGYA 120
            P   GH        C   +L                                V VQGYA
Sbjct: 61  QPVVSGH------QPCYHGHLGYQA----------------------------VPVQGYA 120

Query: 121 ILEGRPFQEARLPCCGIGMGWFLFMIGFFLGGIPWYVGAFIVLFVRVDYREKPGYVACAI 180
           ILEGRPFQEARLPCCGIGMGWFLFMIGFFLGGIPWYVGAFIVLFVRVDYREKPGYVACAI
Sbjct: 121 ILEGRPFQEARLPCCGIGMGWFLFMIGFFLGGIPWYVGAFIVLFVRVDYREKPGYVACAI 159

Query: 181 ASVLAVVAITFGITKGVDPW 197
           ASVLAV+AITFGIT GV+PW
Sbjct: 181 ASVLAVIAITFGITNGVEPW 159

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BLAST of ClCG03G007100 vs. TrEMBL
Match: M5WI28_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012647mg PE=4 SV=1)

HSP 1 Score: 196.8 bits (499), Expect = 2.4e-47
Identity = 99/196 (50.51%), Postives = 118/196 (60.20%), Query Frame = 1


Query: 1   MTGDGKSSAVFGDPQTQYHYGTFQGVANYYSSAPQPQPQSVVGFPQPVAPPAVSGHHPCY 60
           M+ D K+  + GD Q+Q +YGTFQGVANYY + P P P+ VVGFPQPV PP  +G  P  
Sbjct: 1   MSDDSKTRGLAGDQQSQQYYGTFQGVANYYPTVPPPPPEPVVGFPQPVPPPGSTGRPP-- 60

Query: 61  HGHLGYQAVPGCLLNNLFLMVPGSDVHLMICHAQWYGCLYPSSALMLLLVVVQGYAILEG 120
                               +P    H    H  +                V GYA++EG
Sbjct: 61  --------------------LPPHHQHHHHHHRGYQ--------------TVTGYAVVEG 120

Query: 121 RPFQEARLPCCGIGMGWFLFMIGFFLGGIPWYVGAFIVLFVRVDYREKPGYVACAIASVL 180
           RP  E RLPCCG+G+GW LF+IGFFLGGIPWYVG FI+L VRVDYREKPGYVAC IAS+L
Sbjct: 121 RPVHERRLPCCGMGIGWLLFIIGFFLGGIPWYVGTFILLCVRVDYREKPGYVACTIASIL 160

Query: 181 AVVAITFGITKGVDPW 197
           AV+A+T G TKG   W
Sbjct: 181 AVIAVTLGATKGARTW 160

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BLAST of ClCG03G007100 vs. TrEMBL
Match: A0A067GS61_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g045574mg PE=4 SV=1)

HSP 1 Score: 186.0 bits (471), Expect = 4.3e-44
Identity = 95/196 (48.47%), Postives = 114/196 (58.16%), Query Frame = 1


Query: 1   MTGDGKSSAVFGDPQTQYHYGTFQGVANYYSSAPQPQPQSVVGFPQPVAPPAVSGHHPCY 60
           M  + K   +  +PQ + +YGTFQGV NYY   PQ  PQ VVG PQP+ PP         
Sbjct: 1   MNDEQKGRGLISNPQNKNYYGTFQGVVNYYPPFPQAPPQQVVGLPQPIPPP--------- 60

Query: 61  HGHLGYQAVPGCLLNNLFLMVPGSDVHLMICHAQWYGCLYPSSALMLLLVVVQGYAILEG 120
                                PG   H ++     YG  Y +         + GYA++EG
Sbjct: 61  --------------------GPGISNHPLL-----YGHGYQT---------IPGYAVVEG 120

Query: 121 RPFQEARLPCCGIGMGWFLFMIGFFLGGIPWYVGAFIVLFVRVDYREKPGYVACAIASVL 180
           RP  E RLPCCGIGMGWFLF+IGFFLGGIPWYVGAFI L  +VDYREKPGY+ACAIASVL
Sbjct: 121 RPLGEYRLPCCGIGMGWFLFIIGFFLGGIPWYVGAFIALCAQVDYREKPGYIACAIASVL 153

Query: 181 AVVAITFGITKGVDPW 197
            ++A+T G+TKG   W
Sbjct: 181 TMIALTLGVTKGAHTW 153

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BLAST of ClCG03G007100 vs. TrEMBL
Match: V4UKQ3_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10017045mg PE=4 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 5.6e-44
Identity = 95/196 (48.47%), Postives = 114/196 (58.16%), Query Frame = 1


Query: 1   MTGDGKSSAVFGDPQTQYHYGTFQGVANYYSSAPQPQPQSVVGFPQPVAPPAVSGHHPCY 60
           M  + K   +  +PQ Q +YGTFQGV NY+   PQ  PQ VVG PQP+ PP         
Sbjct: 1   MNDEQKGRGLISNPQNQNYYGTFQGVVNYHPPFPQAPPQQVVGLPQPIPPP--------- 60

Query: 61  HGHLGYQAVPGCLLNNLFLMVPGSDVHLMICHAQWYGCLYPSSALMLLLVVVQGYAILEG 120
                                PG   H ++     YG  Y +         + GYA++EG
Sbjct: 61  --------------------GPGISNHPLL-----YGHGYQT---------IPGYAVVEG 120

Query: 121 RPFQEARLPCCGIGMGWFLFMIGFFLGGIPWYVGAFIVLFVRVDYREKPGYVACAIASVL 180
           RP  E RLPCCGIGMGWFLF+IGFFLGGIPWYVGAFI L  +VDYREKPGY+ACAIASVL
Sbjct: 121 RPLGEHRLPCCGIGMGWFLFIIGFFLGGIPWYVGAFIALCAQVDYREKPGYIACAIASVL 153

Query: 181 AVVAITFGITKGVDPW 197
            ++A+T G+TKG   W
Sbjct: 181 TMIALTLGVTKGAHTW 153

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BLAST of ClCG03G007100 vs. TrEMBL
Match: A0A067KP95_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04605 PE=4 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 6.4e-40
Identity = 99/198 (50.00%), Postives = 120/198 (60.61%), Query Frame = 1


Query: 1   MTGDGKSSAV--FGDPQTQYHYGTFQGVANYYSSAPQPQPQSVVGFPQPVAPPAVSGHHP 60
           MT +GK+  V   G+PQTQY YGTFQGVANYY S         V  P P  PP       
Sbjct: 1   MTEEGKNRGVNVTGNPQTQY-YGTFQGVANYYPS---------VSQPAPPPPP------- 60

Query: 61  CYHGHLGYQAVPGCLLNNLFLMVPGSDVHLMICHAQWYGCLYPSSALMLLLVVVQGYAIL 120
             H  +G+             + P    H  I + Q++   Y S A         GYA++
Sbjct: 61  --HTVVGFPQP----------IAP----HGSIANPQYFPHGYNSFAT--------GYAVI 120

Query: 121 EGRPFQEARLPCCGIGMGWFLFMIGFFLGGIPWYVGAFIVLFVRVDYREKPGYVACAIAS 180
           EGRP +E RLPCCG+GMGWFLF++GFFLGGIPWYVG FIVL V+VDYREK GYVACAIAS
Sbjct: 121 EGRPVREHRLPCCGLGMGWFLFIVGFFLGGIPWYVGTFIVLCVQVDYREKAGYVACAIAS 157

Query: 181 VLAVVAITFGITKGVDPW 197
           +LA++A+T G+TKG   W
Sbjct: 181 ILAMIAVTLGVTKGAHTW 157

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BLAST of ClCG03G007100 vs. TAIR10
Match: AT1G53560.1 (AT1G53560.1 Ribosomal protein L18ae family)

HSP 1 Score: 133.3 bits (334), Expect = 1.7e-31
Identity = 76/181 (41.99%), Postives = 89/181 (49.17%), Query Frame = 1


Query: 20  YGTFQGVANY----YSSAPQPQPQSVVGFPQPVAPPAVSGHHPCYHGHLGYQAVPGCLLN 79
           YGTFQGV  Y    Y   P   P  V+G PQP  PP  S HH                  
Sbjct: 16  YGTFQGVPTYPPPSYPHPPSHHP--VIGIPQPSPPPG-SPHHD----------------- 75

Query: 80  NLFLMVPGSDVHLMICHAQWYGCLYPSSALMLLLVVVQGYAILEGRPFQEARLPCCGIGM 139
                     VH  I   Q                 V GY + +GRP ++ RLPCCG+G+
Sbjct: 76  --------ISVHQYIQEHQ----------------TVAGYPVSQGRPARQNRLPCCGLGL 135

Query: 140 GWFLFMIGFFLGGIPWYVGAFIVLFVRVDYREKPGYVACAIASVLAVVAITFGITKGVDP 197
           GWFLF+IGF LG IPWYVG FI++  R+D REKPGYVAC IA+V+A + I FG+  G   
Sbjct: 136 GWFLFIIGFLLGAIPWYVGVFILVCARIDPREKPGYVACTIAAVVATITIVFGVMGGRGV 152

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BLAST of ClCG03G007100 vs. TAIR10
Match: AT1G17080.1 (AT1G17080.1 Ribosomal protein L18ae family)

HSP 1 Score: 129.0 bits (323), Expect = 3.1e-30
Identity = 52/81 (64.20%), Postives = 66/81 (81.48%), Query Frame = 1


Query: 117 ILEGRPFQEARLPCCGIGMGWFLFMIGFFLGGIPWYVGAFIVLF-VRVDYREKPGYVACA 176
           + EGRP ++ RLPCCGIG+GWFLF++GFFLG IPWYVG FI++F  R+DYREKPGY+AC 
Sbjct: 74  VAEGRPVRQRRLPCCGIGLGWFLFIVGFFLGAIPWYVGLFIMMFGRRIDYREKPGYIACT 133

Query: 177 IASVLAVVAITFGITKGVDPW 197
           IA++LA +A+  G++KG D W
Sbjct: 134 IAAILATIAVILGVSKGADDW 154

HSP 2 Score: 55.1 bits (131), Expect = 5.8e-08
Identity = 33/69 (47.83%), Postives = 37/69 (53.62%), Query Frame = 1


Query: 4  DGKSSAVFGDPQTQYH-YGTFQGVANYYSSAPQPQPQS-VVGFPQPVAPPAVSGHHPCYH 63
          + KS     +   Q+H YGTFQGV+NY    P PQ  + V GFPQP APP V      Y+
Sbjct: 6  EDKSKGFASEEGNQHHQYGTFQGVSNY----PPPQNSAPVTGFPQPSAPPGVYDSGAPYY 65

Query: 64 GHLGYQAVP 71
           H GYQ VP
Sbjct: 66 AH-GYQTVP 69

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BLAST of ClCG03G007100 vs. TAIR10
Match: AT1G29970.2 (AT1G29970.2 60S ribosomal protein L18A-1)

HSP 1 Score: 120.2 bits (300), Expect = 1.5e-27
Identity = 74/166 (44.58%), Postives = 87/166 (52.41%), Query Frame = 1


Query: 15  QTQYHYGTFQGVANYYSSAPQPQPQSVVGFPQPVAPPA-VSGHHPC--YHGHLGYQAVPG 74
           Q QY+YGTFQGVAN               FP P  PP  +   HP   + GH  YQ + G
Sbjct: 16  QHQYYYGTFQGVAN---------------FPTPTPPPQFMQPQHPITTFPGH-AYQNLQG 75

Query: 75  CLLNNLFLMVPGSDVHLMICHAQWYGCLYPSSALMLLLVVVQGYAILEGRPFQEARLPCC 134
                      G  V+    +AQ +             VVV  Y ++E RP  E  LPCC
Sbjct: 76  ----------HGGGVN----YAQGFP------------VVVPDYTVVEVRPMIEHELPCC 135

Query: 135 GIGMGWFLFMIGFFLGGIPWYVGAFIVLFVRVDYREKPGYVACAIA 178
           G+GMGWFLF++GF  GGIPWY+GAFIVL   VD+REK GYVAC+IA
Sbjct: 136 GLGMGWFLFIMGFLFGGIPWYLGAFIVLVTSVDHREKAGYVACSIA 139

[Close]

BLAST of ClCG03G007100 vs. TAIR10
Match: AT3G14595.1 (AT3G14595.1 Ribosomal protein L18ae family)

HSP 1 Score: 90.1 bits (222), Expect = 1.6e-18
Identity = 40/84 (47.62%), Postives = 55/84 (65.48%), Query Frame = 1


Query: 113 QGYAILEGRPFQEARLPCCGIGMGWFLFMIGFFLGGIPWYVGAFIVLFVRVDYREKPGYV 172
           QGY +   RP +  R  CCGIG+GW LF++GFF   +PWY+G F++LF R + RE+PGY+
Sbjct: 52  QGYVVNGVRPTEHGR--CCGIGIGWVLFILGFFFA-LPWYIGFFLLLFSR-NPRERPGYI 111

Query: 173 ACAIASVLAVVAITFGITKGVDPW 197
           ACA+ +V A + + FG  +G   W
Sbjct: 112 ACAVGAVFATIIVIFGTVRGSGVW 131

[Close]

BLAST of ClCG03G007100 vs. TAIR10
Match: AT1G54217.2 (AT1G54217.2 Ribosomal protein L18ae family)

HSP 1 Score: 51.6 bits (122), Expect = 6.4e-07
Identity = 26/64 (40.62%), Postives = 35/64 (54.69%), Query Frame = 1


Query: 128 LPCCGIGMGWFLFMIGFFLGGIPWYVGAFIVL--FVRVDYREKPGYVACAIASVLAVVAI 187
           LPC G G+GWF F++GF      WYV  F+ L  +   D RE+ G  A AIA+++  VA+
Sbjct: 33  LPCFGFGIGWFSFLLGFVF-PFAWYVATFLYLISYYHRDPRERSGLAASAIAALIFSVAL 92

Query: 188 TFGI 190
              +
Sbjct: 93  VITV 95

[Close]

BLAST of ClCG03G007100 vs. NCBI nr
Match: gi|659068354|ref|XP_008444018.1| (PREDICTED: 60S ribosomal protein L18a-like protein [Cucumis melo])

HSP 1 Score: 232.6 bits (592), Expect = 5.7e-58
Identity = 127/196 (64.80%), Postives = 134/196 (68.37%), Query Frame = 1


Query: 1   MTGDGKSSAVFGDPQTQYHYGTFQGVANYYSSAPQPQPQSVVGFPQPVAPPAVSGHHPCY 60
           M+GDGKSS VFGDP +QYHYGTFQGVANYY+S PQPQPQ     PQP             
Sbjct: 1   MSGDGKSSVVFGDPHSQYHYGTFQGVANYYTSPPQPQPQ-----PQP------------- 60

Query: 61  HGHLGYQAVPGCLLNNLFLMVPGSDVHLMICHAQWYGCLYPSSALMLLLVVVQGYAILEG 120
                 Q+V G        +V G   H    H            L    V VQGYAILEG
Sbjct: 61  ------QSVVGFPQPVAPPVVSG---HQPCYHGH----------LGYQAVPVQGYAILEG 120

Query: 121 RPFQEARLPCCGIGMGWFLFMIGFFLGGIPWYVGAFIVLFVRVDYREKPGYVACAIASVL 180
           RPFQEARLPCCGIGMGWFLFMIGFFLGGIPWYVGAFIVLFVRVDYREKPGYVACAIASVL
Sbjct: 121 RPFQEARLPCCGIGMGWFLFMIGFFLGGIPWYVGAFIVLFVRVDYREKPGYVACAIASVL 159

Query: 181 AVVAITFGITKGVDPW 197
           AV+AITFGIT GV+PW
Sbjct: 181 AVIAITFGITNGVEPW 159

[Close]

BLAST of ClCG03G007100 vs. NCBI nr
Match: gi|449459346|ref|XP_004147407.1| (PREDICTED: 60S ribosomal protein L18a-like protein [Cucumis sativus])

HSP 1 Score: 231.9 bits (590), Expect = 9.7e-58
Identity = 125/200 (62.50%), Postives = 134/200 (67.00%), Query Frame = 1


Query: 1   MTGDGKSSAVFGDPQTQYHYGTFQGVANYYSSAPQPQPQSVVGFPQPVA----PPAVSGH 60
           M+GDGKS+ VFGDP +QYHYGTFQGVANYY+S PQPQPQ     PQP +    P  V+  
Sbjct: 1   MSGDGKSNVVFGDPHSQYHYGTFQGVANYYTSPPQPQPQ-----PQPQSVVGFPQPVA-- 60

Query: 61  HPCYHGHLGYQAVPGCLLNNLFLMVPGSDVHLMICHAQWYGCLYPSSALMLLLVVVQGYA 120
            P   GH        C   +L                                V VQGYA
Sbjct: 61  QPVVSGH------QPCYHGHLGYQA----------------------------VPVQGYA 120

Query: 121 ILEGRPFQEARLPCCGIGMGWFLFMIGFFLGGIPWYVGAFIVLFVRVDYREKPGYVACAI 180
           ILEGRPFQEARLPCCGIGMGWFLFMIGFFLGGIPWYVGAFIVLFVRVDYREKPGYVACAI
Sbjct: 121 ILEGRPFQEARLPCCGIGMGWFLFMIGFFLGGIPWYVGAFIVLFVRVDYREKPGYVACAI 159

Query: 181 ASVLAVVAITFGITKGVDPW 197
           ASVLAV+AITFGIT GV+PW
Sbjct: 181 ASVLAVIAITFGITNGVEPW 159

[Close]

BLAST of ClCG03G007100 vs. NCBI nr
Match: gi|595875425|ref|XP_007212180.1| (hypothetical protein PRUPE_ppa012647mg [Prunus persica])

HSP 1 Score: 196.8 bits (499), Expect = 3.5e-47
Identity = 99/196 (50.51%), Postives = 118/196 (60.20%), Query Frame = 1


Query: 1   MTGDGKSSAVFGDPQTQYHYGTFQGVANYYSSAPQPQPQSVVGFPQPVAPPAVSGHHPCY 60
           M+ D K+  + GD Q+Q +YGTFQGVANYY + P P P+ VVGFPQPV PP  +G  P  
Sbjct: 1   MSDDSKTRGLAGDQQSQQYYGTFQGVANYYPTVPPPPPEPVVGFPQPVPPPGSTGRPP-- 60

Query: 61  HGHLGYQAVPGCLLNNLFLMVPGSDVHLMICHAQWYGCLYPSSALMLLLVVVQGYAILEG 120
                               +P    H    H  +                V GYA++EG
Sbjct: 61  --------------------LPPHHQHHHHHHRGYQ--------------TVTGYAVVEG 120

Query: 121 RPFQEARLPCCGIGMGWFLFMIGFFLGGIPWYVGAFIVLFVRVDYREKPGYVACAIASVL 180
           RP  E RLPCCG+G+GW LF+IGFFLGGIPWYVG FI+L VRVDYREKPGYVAC IAS+L
Sbjct: 121 RPVHERRLPCCGMGIGWLLFIIGFFLGGIPWYVGTFILLCVRVDYREKPGYVACTIASIL 160

Query: 181 AVVAITFGITKGVDPW 197
           AV+A+T G TKG   W
Sbjct: 181 AVIAVTLGATKGARTW 160

[Close]

BLAST of ClCG03G007100 vs. NCBI nr
Match: gi|657982866|ref|XP_008383488.1| (PREDICTED: 60S ribosomal protein L18a-like protein [Malus domestica])

HSP 1 Score: 189.1 bits (479), Expect = 7.2e-45
Identity = 101/199 (50.75%), Postives = 119/199 (59.80%), Query Frame = 1


Query: 1   MTGDGKSSAVFGDPQ-----TQYHYGTFQGVANYYSSAPQPQPQSVVGFPQPVAPPAVSG 60
           M+ D K+  + GD Q      Q +YGTFQGVANYY   PQP P+ VVGFPQPV PP  SG
Sbjct: 1   MSDDSKTRGLSGDQQGQSQSQQQYYGTFQGVANYYPPPPQPPPEPVVGFPQPVPPPRSSG 60

Query: 61  HHPCYHGHLGYQAVPGCLLNNLFLMVPGSDVHLMICHAQWYGCLYPSSALMLLLVVVQGY 120
             P               L  L  + P    H    H   Y               V GY
Sbjct: 61  RPP---------------LPPLPPLPPHXHHHHHHHHQHGYQ-------------TVTGY 120

Query: 121 AILEGRPFQEARLPCCGIGMGWFLFMIGFFLGGIPWYVGAFIVLFVRVDYREKPGYVACA 180
           A++EGRP +E RLPCCGIG+GW LF+ GFFLGGIPWYVG FI+L V+VDYREKPGYVAC 
Sbjct: 121 AVVEGRPVRERRLPCCGIGIGWLLFIAGFFLGGIPWYVGTFILLCVQVDYREKPGYVACT 171

Query: 181 IASVLAVVAITFGITKGVD 195
           IA++LAV+AIT G+T G +
Sbjct: 181 IAAILAVIAITLGVTNGAE 171

[Close]

BLAST of ClCG03G007100 vs. NCBI nr
Match: gi|658045863|ref|XP_008358616.1| (PREDICTED: 60S ribosomal protein L18a-like protein [Malus domestica])

HSP 1 Score: 189.1 bits (479), Expect = 7.2e-45
Identity = 101/199 (50.75%), Postives = 119/199 (59.80%), Query Frame = 1


Query: 1   MTGDGKSSAVFGDPQ-----TQYHYGTFQGVANYYSSAPQPQPQSVVGFPQPVAPPAVSG 60
           M+ D K+  + GD Q      Q +YGTFQGVANYY   PQP P+ VVGFPQPV PP  SG
Sbjct: 1   MSDDSKTRGLSGDQQGQSQSQQQYYGTFQGVANYYPPPPQPPPEPVVGFPQPVPPPRSSG 60

Query: 61  HHPCYHGHLGYQAVPGCLLNNLFLMVPGSDVHLMICHAQWYGCLYPSSALMLLLVVVQGY 120
             P               L  L  + P    H    H   Y               V GY
Sbjct: 61  RPP---------------LPPLPPLPPHHHHHHHHHHQHGYQ-------------TVTGY 120

Query: 121 AILEGRPFQEARLPCCGIGMGWFLFMIGFFLGGIPWYVGAFIVLFVRVDYREKPGYVACA 180
           A++EGRP +E RLPCCGIG+GW LF+ GFFLGGIPWYVG FI+L V+VDYREKPGYVAC 
Sbjct: 121 AVVEGRPVRERRLPCCGIGIGWLLFIAGFFLGGIPWYVGTFILLCVQVDYREKPGYVACT 171

Query: 181 IASVLAVVAITFGITKGVD 195
           IA++LAV+AIT G+T G +
Sbjct: 181 IAAILAVIAITLGVTNGAE 171

The following BLAST results are available for this feature:

BLAST of ClCG03G007100 vs. Swiss-Prot


Match Name	E-value	Identity	Description
R18AL_ARATH	1.0e-30	43.24	60S ribosomal protein L18a-like protein OS=Arabidopsis thaliana GN=At1g29970 PE=...	[more]

BLAST of ClCG03G007100 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0M051_CUCSA	6.8e-58	62.50	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G448970 PE=4 SV=1	[more]
M5WI28_PRUPE	2.4e-47	50.51	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012647mg PE=4 SV=1	[more]
A0A067GS61_CITSI	4.3e-44	48.47	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g045574mg PE=4 SV=1	[more]
V4UKQ3_9ROSI	5.6e-44	48.47	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10017045mg PE=4 SV=1	[more]
A0A067KP95_JATCU	6.4e-40	50.00	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04605 PE=4 SV=1	[more]

BLAST of ClCG03G007100 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G53560.1	1.7e-31	41.99	Ribosomal protein L18ae family	[more]
AT1G17080.1	3.1e-30	64.20	Ribosomal protein L18ae family	[more]
AT1G29970.2	1.5e-27	44.58	60S ribosomal protein L18A-1	[more]
AT3G14595.1	1.6e-18	47.62	Ribosomal protein L18ae family	[more]
AT1G54217.2	6.4e-07	40.63	Ribosomal protein L18ae family	[more]

BLAST of ClCG03G007100 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659068354\|ref\|XP_008444018.1\|	5.7e-58	64.80	PREDICTED: 60S ribosomal protein L18a-like protein [Cucumis melo]	[more]
gi\|449459346\|ref\|XP_004147407.1\|	9.7e-58	62.50	PREDICTED: 60S ribosomal protein L18a-like protein [Cucumis sativus]	[more]
gi\|595875425\|ref\|XP_007212180.1\|	3.5e-47	50.51	hypothetical protein PRUPE_ppa012647mg [Prunus persica]	[more]
gi\|657982866\|ref\|XP_008383488.1\|	7.2e-45	50.75	PREDICTED: 60S ribosomal protein L18a-like protein [Malus domestica]	[more]
gi\|658045863\|ref\|XP_008358616.1\|	7.2e-45	50.75	PREDICTED: 60S ribosomal protein L18a-like protein [Malus domestica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG03G007100.1	ClCG03G007100.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR10052	60S RIBOSOMAL PROTEIN L18A	coord: 112..196 score: 1.4
None	No IPR available	PANTHER	PTHR10052:SF9	SUBFAMILY NOT NAMED	coord: 112..196 score: 1.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG03G007100	Csa1G448970	Cucumber (Chinese Long) v2	cuwcgB036
ClCG03G007100	MELO3C002714	Melon (DHL92) v3.5.1	mewcgB150
ClCG03G007100	Cla019609	Watermelon (97103) v1	wcgwmB223
ClCG03G007100	Cla97C03G058330	Watermelon (97103) v2	wcgwmbB186
ClCG03G007100	Bhi08G001723	Wax gourd	wcgwgoB341
ClCG03G007100	CSPI01G21440	Wild cucumber (PI 183967)	cpiwcgB039
ClCG03G007100	Cucsa.212440	Cucumber (Gy14) v1	cgywcgB388
ClCG03G007100	CmaCh13G005590	Cucurbita maxima (Rimu)	cmawcgB195
ClCG03G007100	Lsi02G008640	Bottle gourd (USVL1VR-Ls)	lsiwcgB188
ClCG03G007100	CsGy1G021150	Cucumber (Gy14) v2	cgybwcgB034
ClCG03G007100	MELO3C002714.2	Melon (DHL92) v3.6.1	medwcgB142
ClCG03G007100	Carg19922	Silver-seed gourd	carwcgB0773
ClCG03G007100	CsaV3_1G032680	Cucumber (Chinese Long) v3	cucwcgB039

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG03G007100	Melon (DHL92) v3.6.1	medwcgB518
ClCG03G007100	Silver-seed gourd	carwcgB0144
ClCG03G007100	Silver-seed gourd	carwcgB0532
ClCG03G007100	Silver-seed gourd	carwcgB0932
ClCG03G007100	Cucumber (Chinese Long) v3	cucwcgB483
ClCG03G007100	Watermelon (97103) v2	wcgwmbB174
ClCG03G007100	Watermelon (97103) v2	wcgwmbB183
ClCG03G007100	Wax gourd	wcgwgoB332
ClCG03G007100	Wax gourd	wcgwgoB336
ClCG03G007100	Watermelon (Charleston Gray)	wcgwcgB093
ClCG03G007100	Cucumber (Gy14) v1	cgywcgB027
ClCG03G007100	Cucurbita maxima (Rimu)	cmawcgB357
ClCG03G007100	Cucurbita maxima (Rimu)	cmawcgB583
ClCG03G007100	Cucurbita maxima (Rimu)	cmawcgB759
ClCG03G007100	Cucurbita moschata (Rifu)	cmowcgB185
ClCG03G007100	Cucurbita moschata (Rifu)	cmowcgB352
ClCG03G007100	Cucurbita moschata (Rifu)	cmowcgB582
ClCG03G007100	Cucurbita moschata (Rifu)	cmowcgB760
ClCG03G007100	Wild cucumber (PI 183967)	cpiwcgB486
ClCG03G007100	Cucumber (Chinese Long) v2	cuwcgB462
ClCG03G007100	Melon (DHL92) v3.5.1	mewcgB523
ClCG03G007100	Watermelon (97103) v1	wcgwmB238
ClCG03G007100	Watermelon (97103) v1	wcgwmB245
ClCG03G007100	Cucurbita pepo (Zucchini)	cpewcgB035
ClCG03G007100	Cucurbita pepo (Zucchini)	cpewcgB069
ClCG03G007100	Cucurbita pepo (Zucchini)	cpewcgB277
ClCG03G007100	Cucurbita pepo (Zucchini)	cpewcgB431
ClCG03G007100	Cucurbita pepo (Zucchini)	cpewcgB468
ClCG03G007100	Bottle gourd (USVL1VR-Ls)	lsiwcgB133
ClCG03G007100	Cucumber (Gy14) v2	cgybwcgB424