MELO3C002493 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C002493
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Retrotransposon protein, putative, unclassified
Location	chr12 : 22506565 .. 22507596 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAAACCCTGTAGAAGCATTAGACGCCAAATTGAAGAAGGTTGAGGATGAAGAAGTTCACAACATCCCAACAACTCATGACAACAACCTCACCACTCTCATGCACCAAATGGCCCTGCTTCTGAACGGACACCAACAATGCCTACCTCAATACGCACCCACCCACCGGATGCCCAACCTGGAGCTACCCATGTTCGACGGAACAGATACCCTCATGTGGATCTTGAAAATGGAGCGATACTTTGAAGTTCACCACATTGACGACATTGCCCGGATGATGGACACCATCCTTCTCTGTATGTCTGGCCAAGCCCTTGCCTGGTTCCGGTGCTTTCAAAACTGGGGAAAACCGCCGGAATCGTGGGATGAGTTCCGGGATTCTTTGTATATGAGATTTGGAGACGCTCGCAACGTGTGTTCCAAGTTCCTCGGCTTGGAGCAAGAGGGGAGTGTTGAGGAATATTGTAGCAAGTTCGAGACACTAGGGGCGCTCCTTCCAGAACTCCAACACGTTGTTCTTGAAGCTAAATTTATGAACGGCTTGAAGACAGAGATTCGAGAGGATGTTAGGATGTTACATCCAAAAGATATACTGGACATTATGCATAGAGCGAGGTTAGGGGAAAAGAAGAACAACGTCGCTTTGAACTCAACCAAGCGTAAAGGCACTGTCAAGGAGAGGTCTGTGATTGTTAAGGTCGTCAGTTGGACTGATTATAACTTAATCTCTAAAAACTTAGCTACAGACTTGAAGCTTAAATTGGACATGTATGGCGACTACAGTGTGGTTTTAGGTTCCGGGAAGAAGGTGAAAGGAGACGGAATTTGCCGTGGGGTGTTGCTGCAAATCGGGAATGATACCTATGTGGAGGATTTCTTTCCCCTTCAAATGGGAGAGGATGATGAGGTGATATTGGGAAATCTGTGGTTGGTGGCTTTAGGCAAGATGGAAGTTGATTGGAAAAATCTTCCGATGAAGCTGAAGGTGGGGAAGGAGACGGTTACTTTACGAAAAGACCCATTTCTCTGA

mRNA sequence

ATGGAAAACCCTGTAGAAGCATTAGACGCCAAATTGAAGAAGGTTGAGGATGAAGAAGTTCACAACATCCCAACAACTCATGACAACAACCTCACCACTCTCATGCACCAAATGGCCCTGCTTCTGAACGGACACCAACAATGCCTACCTCAATACGCACCCACCCACCGGATGCCCAACCTGGAGCTACCCATGTTCGACGGAACAGATACCCTCATGTGGATCTTGAAAATGGAGCGATACTTTGAAGTTCACCACATTGACGACATTGCCCGGATGATGGACACCATCCTTCTCTGTATGTCTGGCCAAGCCCTTGCCTGGTTCCGGTGCTTTCAAAACTGGGGAAAACCGCCGGAATCGTGGGATGAGTTCCGGGATTCTTTGTATATGAGATTTGGAGACGCTCGCAACGTGTGTTCCAAGTTCCTCGGCTTGGAGCAAGAGGGGAGTGTTGAGGAATATTGTAGCAAGTTCGAGACACTAGGGGCGCTCCTTCCAGAACTCCAACACGTTGTTCTTGAAGCTAAATTTATGAACGGCTTGAAGACAGAGATTCGAGAGGATGTTAGGATGTTACATCCAAAAGATATACTGGACATTATGCATAGAGCGAGGTTAGGGGAAAAGAAGAACAACGTCGCTTTGAACTCAACCAAGCGTAAAGGCACTGTCAAGGAGAGGTCTGTGATTGTTAAGGTCGTCAGTTGGACTGATTATAACTTAATCTCTAAAAACTTAGCTACAGACTTGAAGCTTAAATTGGACATGTATGGCGACTACAGTGTGGTTTTAGGTTCCGGGAAGAAGGTGAAAGGAGACGGAATTTGCCGTGGGGTGTTGCTGCAAATCGGGAATGATACCTATGTGGAGGATTTCTTTCCCCTTCAAATGGGAGAGGATGATGAGGTGATATTGGGAAATCTGTGGTTGGTGGCTTTAGGCAAGATGGAAGTTGATTGGAAAAATCTTCCGATGAAGCTGAAGGTGGGGAAGGAGACGGTTACTTTACGAAAAGACCCATTTCTCTGA

Coding sequence (CDS)

ATGGAAAACCCTGTAGAAGCATTAGACGCCAAATTGAAGAAGGTTGAGGATGAAGAAGTTCACAACATCCCAACAACTCATGACAACAACCTCACCACTCTCATGCACCAAATGGCCCTGCTTCTGAACGGACACCAACAATGCCTACCTCAATACGCACCCACCCACCGGATGCCCAACCTGGAGCTACCCATGTTCGACGGAACAGATACCCTCATGTGGATCTTGAAAATGGAGCGATACTTTGAAGTTCACCACATTGACGACATTGCCCGGATGATGGACACCATCCTTCTCTGTATGTCTGGCCAAGCCCTTGCCTGGTTCCGGTGCTTTCAAAACTGGGGAAAACCGCCGGAATCGTGGGATGAGTTCCGGGATTCTTTGTATATGAGATTTGGAGACGCTCGCAACGTGTGTTCCAAGTTCCTCGGCTTGGAGCAAGAGGGGAGTGTTGAGGAATATTGTAGCAAGTTCGAGACACTAGGGGCGCTCCTTCCAGAACTCCAACACGTTGTTCTTGAAGCTAAATTTATGAACGGCTTGAAGACAGAGATTCGAGAGGATGTTAGGATGTTACATCCAAAAGATATACTGGACATTATGCATAGAGCGAGGTTAGGGGAAAAGAAGAACAACGTCGCTTTGAACTCAACCAAGCGTAAAGGCACTGTCAAGGAGAGGTCTGTGATTGTTAAGGTCGTCAGTTGGACTGATTATAACTTAATCTCTAAAAACTTAGCTACAGACTTGAAGCTTAAATTGGACATGTATGGCGACTACAGTGTGGTTTTAGGTTCCGGGAAGAAGGTGAAAGGAGACGGAATTTGCCGTGGGGTGTTGCTGCAAATCGGGAATGATACCTATGTGGAGGATTTCTTTCCCCTTCAAATGGGAGAGGATGATGAGGTGATATTGGGAAATCTGTGGTTGGTGGCTTTAGGCAAGATGGAAGTTGATTGGAAAAATCTTCCGATGAAGCTGAAGGTGGGGAAGGAGACGGTTACTTTACGAAAAGACCCATTTCTCTGA

Protein sequence

MENPVEALDAKLKKVEDEEVHNIPTTHDNNLTTLMHQMALLLNGHQQCLPQYAPTHRMPNLELPMFDGTDTLMWILKMERYFEVHHIDDIARMMDTILLCMSGQALAWFRCFQNWGKPPESWDEFRDSLYMRFGDARNVCSKFLGLEQEGSVEEYCSKFETLGALLPELQHVVLEAKFMNGLKTEIREDVRMLHPKDILDIMHRARLGEKKNNVALNSTKRKGTVKERSVIVKVVSWTDYNLISKNLATDLKLKLDMYGDYSVVLGSGKKVKGDGICRGVLLQIGNDTYVEDFFPLQMGEDDEVILGNLWLVALGKMEVDWKNLPMKLKVGKETVTLRKDPFL*

Homology

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BLAST of MELO3C002493 vs. TrEMBL
Match: A0A0A0LUB3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G064860 PE=4 SV=1)

HSP 1 Score: 395.2 bits (1014), Expect = 8.1e-107
Identity = 195/236 (82.63%), Postives = 210/236 (88.98%), Query Frame = 1


Query: 1   MENPVEALDAKLKKVEDEEVHNIPTTHDNNLTTLMHQMALLLNGHQQCLPQYAPTHRMPN 60
           MENPVEAL+AKLKKVEDEEVHNIP T DNN TTL+HQMALLLN HQQ L QYAPTHRMPN
Sbjct: 1   MENPVEALEAKLKKVEDEEVHNIPIT-DNNHTTLLHQMALLLNAHQQRLLQYAPTHRMPN 60

Query: 61  LELPMFDGTDTLMWILKMERYFEVHHIDDIARMMDTILLCMSGQALAWFRCFQNWGKPPE 120
           LELPMFDGTDTLMWILKMERYFEVHHIDDIA+MM+TILLCMSGQALAWFRCFQNWG PPE
Sbjct: 61  LELPMFDGTDTLMWILKMERYFEVHHIDDIAQMMETILLCMSGQALAWFRCFQNWGNPPE 120

Query: 121 SWDEFRDSLYMRFGDARNVCSKFLGLEQEGSVEEYCSKFETLGALLPELQHVVLEAKFMN 180
           SW EFR SLY RFGD   V S+F+GL+QEGSV EYCSKFE+LGALLPEL H V+EAKFMN
Sbjct: 121 SWGEFRGSLYKRFGDGHRVLSRFIGLQQEGSVGEYCSKFESLGALLPELSHCVVEAKFMN 180

Query: 181 GLKTEIREDVRMLHPKDILDIMHRARLGEKKNNVALNSTKRKGTVKERSVIVKVVS 237
           GLKTEIR +VRML  + ILDIMHRARL E KNNVA NSTKRKGTVKE S+I+ ++S
Sbjct: 181 GLKTEIRGEVRMLDTEGILDIMHRARLAEIKNNVAFNSTKRKGTVKESSLIMIMLS 235

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BLAST of MELO3C002493 vs. TrEMBL
Match: A0A151RR99_CAJCA (Transposon Ty3-G Gag-Pol polyprotein OS=Cajanus cajan GN=KK1_033368 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 1.0e-24
Identity = 87/293 (29.69%), Postives = 154/293 (52.56%), Query Frame = 1


Query: 55  THRMPNLELPMFDGTDTLMWILKMERYFEVHHIDDIARMMDTILLCMSGQALAWFRCFQN 114
           T +   +ELP+F+G D   WI ++ERYF + +I+++ +M + +L+ M G+AL+W    Q 
Sbjct: 6   TEKFRKMELPIFEGEDAPGWIGRIERYFRLRNINELEKM-EVVLVAMEGEALSWL---QW 65

Query: 115 WGKPPES--WDEFRDSLYMRFGDA--RNVCSKFLGLEQEGSVEEYCSKFETLGALLPELQ 174
           W    E+  W+EF++++  RF      N     LGL+QEGS +        L  ++ E  
Sbjct: 66  WESCTENIAWEEFKEAILKRFQPTMVENSFEILLGLKQEGSNK-------MLKIMIVEDD 125

Query: 175 HVVLEAKFMNGLKTEIREDVRMLHPKDILDIMHRARLGEKKNNVALNSTKRKGTVKERSV 234
            +  E    +  K EI  +V+       L +   A L  KK      S    G + E  V
Sbjct: 126 EIGEEG---DREKEEIVWEVQFKS----LTLCSMAGLTSKK------SFMMWGEILENKV 185

Query: 235 IVKVVSWTDYNLISKNLATDLKLKLDMYGDYSVVLGSGKKVKGDGICRGVLLQIGNDTYV 294
           +V V S   +N IS  L  +L+L ++    Y V +G G+++K +G+C+G+ +++ N  + 
Sbjct: 186 LVLVDSGATHNFISTKLVENLRLSVEPTIPYYVKVGGGQRIKTNGVCKGLQMKMQNMLFK 245

Query: 295 EDFFPLQMGEDDEVILGNLWLVALGKMEVDWKNLPMKLKVGKETVTLRKDPFL 344
            DF+   + + ++++LG  WL  +G+M  ++K+L +++K      TL+ DP L
Sbjct: 246 ADFYVFAL-DGEDIVLGMEWLEDMGEMRTNFKDLTLRIKKDGIKYTLKGDPTL 273

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BLAST of MELO3C002493 vs. TrEMBL
Match: R0GXZ7_9BRAS (Uncharacterized protein OS=Capsella rubella GN=CARUB_v10004097mg PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 1.8e-21
Identity = 92/302 (30.46%), Postives = 139/302 (46.03%), Query Frame = 1


Query: 70  DTLMWILKMERYFEVHHIDDIARMMDTILLCMSGQALAWFRCFQNWGKP-PESWDEFRDS 129
           D   WI + E YF  ++I +  R+ + +   + G    W +    W +  P+SWDEF+  
Sbjct: 392 DMEKWIHEFENYFFQNNISEDKRL-EVVYATLQGHGGQWIK--GAWERQSPKSWDEFKLM 451

Query: 130 LYMRFGDARNVCS--KFLGLEQEGSVEEYCSKFETL---GALLPELQHVVLEAKFMNGLK 189
           +           S  KFLGL QE +V EY   FE L     LLP  Q   LEA F+  LK
Sbjct: 452 IRHELVGVSRPTSQPKFLGLLQERTVAEYRENFEALCLQSELLPGQQ---LEALFLQELK 511

Query: 190 TEIREDVRMLHPKDILDIMHRARLGEKKNNVAL--------NST---------------- 249
             ++  VR LHP  I+ +M  A+  E K  ++L        +ST                
Sbjct: 512 PSLQTAVRNLHPNGIVQMMDLAQWLEGKELMSLTMGHGDTRSSTTMERITEQSRTDFTKS 571

Query: 250 ---KRKGTVKERSVIVKVVSWTDYNLISKNLATDLKLKLDMYGDYSVVLGSGKKVKGDGI 309
              K  G++    +++ + S    N IS+ LA  L+L +      SV++G G   K  G+
Sbjct: 572 MGFKLYGSLSRNGIVLAIDSGATQNFISEELAKHLRLPIRTKRTVSVLMGHGVHNKSKGV 631

Query: 310 CRGVLLQIGNDTYVEDFFPLQMGEDD-EVILGNLWLVALGKMEVDWKNLPMKLKVGKETV 338
           C+G+ L I +   VEDF  L++ + + EVILG  WL  LG+  V+W+          + +
Sbjct: 632 CKGIKLLIDDVEIVEDFLVLELNKTEAEVILGYGWLSKLGETSVNWQERKFSFLHNHKWI 687

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BLAST of MELO3C002493 vs. TrEMBL
Match: F6GVT4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0083g00660 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 6.8e-21
Identity = 60/156 (38.46%), Postives = 91/156 (58.33%), Query Frame = 1


Query: 188 EDVRMLHPKDILDIMHRARLGEKKNNVALNSTKRKGTVKERSVIVKVVSWTDYNLISKNL 247
           E+  ++  KD++++   + +G         + K KGT++ + VI+ V S   +N +S  L
Sbjct: 24  EEPALIELKDVVELSLNSVVGL----TTPGTMKIKGTIRSKEVIILVDSGATHNFLSLEL 83

Query: 248 ATDLKLKLDMYGDYSVVLGSGKKVKGDGICRGVLLQIGNDTYVEDFFPLQMGEDDEVILG 307
              L L L     Y V++G G  +KG GICRGV + +   T VEDF PL++G  D VILG
Sbjct: 84  VQQLALPLTTITSYGVMMGIGISMKGKGICRGVCISMQGLTVVEDFLPLELGNTD-VILG 143

Query: 308 NLWLVALGKMEVDWKNLPMKLKVGKETVTLRKDPFL 344
             WL  LG ++V+WK L MK+K+GK  + L++DP L
Sbjct: 144 MPWLGTLGDVKVNWKMLTMKIKMGKAVIVLKRDPSL 174

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BLAST of MELO3C002493 vs. TrEMBL
Match: A0A103XJ60_CYNCS (Ankyrin repeat-containing protein OS=Cynara cardunculus var. scolymus GN=Ccrd_006438 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 1.2e-20
Identity = 55/168 (32.74%), Postives = 96/168 (57.14%), Query Frame = 1


Query: 56  HRMPNLELPMFDGTDTLMWILKMERYFEVHHIDDIARMMDTILLCMSGQALAWFRCFQNW 115
           +R+  L++P+FDGTD   W+  MER+F+V         +   +L + GQALAW+R + + 
Sbjct: 160 YRLRKLKMPLFDGTDAYGWVYLMERFFDVQGFVTTGEKLRAAVLGLEGQALAWYR-WSDD 219

Query: 116 GKPPESWDEFRDSLYMRFGDAR--NVCSKFLGLEQEGSVEEYCSKFETLGALLPELQHVV 175
             P   W+  ++ L  RF  ++  ++  +FL ++QEGS  EY  KFET+ A L  +   +
Sbjct: 220 RHPFHHWEGLKNRLLTRFQSSQEGDLYEQFLAIKQEGSAREYVGKFETVSAQLRGIPEKI 279

Query: 176 LEAKFMNGLKTEIREDVRMLHPKDILDIMHRARLGEKKNNVALNSTKR 222
           ++  F+ GLK E+R  VR+L P D+   +  A + ++   V+  +T++
Sbjct: 280 MQGTFLKGLKPELRTSVRLLQPMDLDQAIQLALMVDENKTVSTGNTEK 326

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BLAST of MELO3C002493 vs. TAIR10
Match: AT3G42723.1 (AT3G42723.1 aminoacyl-tRNA ligases;ATP binding;nucleotide binding)

HSP 1 Score: 62.4 bits (150), Expect = 6.3e-10
Identity = 76/293 (25.94%), Postives = 121/293 (41.30%), Query Frame = 1


Query: 79  ERYFEVHHIDDIARMMDTILLCMSGQALAWFRCFQNWGK-PPESWDEFRDSLYMRFGDAR 138
           E YF  ++I +  R+   +   + G    W +    W K  P SW EF+  +        
Sbjct: 279 ENYFGENNIPEQERLQ-IVYSNLEGDIGQWIKHL--WKKNSPTSWKEFKCMMARETKTTM 338

Query: 139 NVCSK--FLGLEQEGSVEEYCSKFETLGALLPELQHVVLEAKFMNGLKTEIREDVRMLHP 198
            V  +  + G++QEGSV EY  +FE L      L    LEA F+ GL+  ++  VR L P
Sbjct: 339 KVNHQPHYSGIQQEGSVREYRERFEALCLGSVILPGQGLEALFLQGLQPSLQTAVRELKP 398

Query: 199 KDILDIMHRARLGEKKNNVALN------STKRK----GTVKERSVIVKVVSWTDYNLISK 258
             I+ +M  A+  E+ N++ +        T+ K       + RS+++      D     +
Sbjct: 399 NGIVQMMDTAQWLEESNSLMVYGSGLSVQTEPKVYPTTQAELRSMVLMGYMREDLKDTPR 458

Query: 259 NLATD---LKLKLDMYGDYSVVLGSGKKVKG-----------------DGICRGVLLQIG 318
               D   LK + ++ G   V    G +  G                    C+ + L+I 
Sbjct: 459 PANEDTGTLKQEHELPGT-EVATCRGMRFYGYILQQEVSFSYRLASDVKRSCQEISLRIN 518

Query: 319 NDTYVEDFFPLQMGED-DEVILGNLWLVALGKMEVDWKNLPMKLKVGKETVTL 338
           +   VED+    +  D  +VILG  WL  LG+ EV+W+N        ++ VTL
Sbjct: 519 DIDIVEDYCVWDLKRDVVDVILGYEWLSKLGETEVNWQNQSFSFIHNQDWVTL 567

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BLAST of MELO3C002493 vs. NCBI nr
Match: gi|778658524|ref|XP_011652863.1| (PREDICTED: uncharacterized protein LOC105435132 [Cucumis sativus])

HSP 1 Score: 604.7 bits (1558), Expect = 9.7e-170
Identity = 299/343 (87.17%), Postives = 313/343 (91.25%), Query Frame = 1


Query: 1   MENPVEALDAKLKKVEDEEVHNIPTTHDNNLTTLMHQMALLLNGHQQCLPQYAPTHRMPN 60
           MENPVEAL+AKLKKVEDEEVHNIP T DNN TTL+HQMALLLN HQQ L QYAPTHRMPN
Sbjct: 1   MENPVEALEAKLKKVEDEEVHNIPIT-DNNHTTLLHQMALLLNAHQQRLLQYAPTHRMPN 60

Query: 61  LELPMFDGTDTLMWILKMERYFEVHHIDDIARMMDTILLCMSGQALAWFRCFQNWGKPPE 120
           LELPMFDGTDTLMWILKMERYFEVHHIDDIA+MM+TILLCMSGQALAWFRCFQNWG PPE
Sbjct: 61  LELPMFDGTDTLMWILKMERYFEVHHIDDIAQMMETILLCMSGQALAWFRCFQNWGNPPE 120

Query: 121 SWDEFRDSLYMRFGDARNVCSKFLGLEQEGSVEEYCSKFETLGALLPELQHVVLEAKFMN 180
           SW EFR SLY RFGD   V S+F+GL+QEGSV EYCSKFE+LGALLPEL H V+EAKFMN
Sbjct: 121 SWGEFRGSLYKRFGDGHRVLSRFIGLQQEGSVGEYCSKFESLGALLPELSHCVVEAKFMN 180

Query: 181 GLKTEIREDVRMLHPKDILDIMHRARLGEKKNNVALNSTKRKGTVKERSVIVKVVSWTDY 240
           GLKTEIR +VRML  + ILDIMHRARL E KNNVA NSTKRKGTVKERSV+VKVVSWTDY
Sbjct: 181 GLKTEIRGEVRMLDTEGILDIMHRARLAEIKNNVAFNSTKRKGTVKERSVVVKVVSWTDY 240

Query: 241 NLISKNLATDLKLKLDMYGDYSVVLGSGKKVKGDGICRGVLLQIGNDTYVEDFFPLQMGE 300
           NLISKNLATDLKLKLDMYGDYSVVLGSGK VKGDGICRGVLLQIGN+TY EDFFPLQMGE
Sbjct: 241 NLISKNLATDLKLKLDMYGDYSVVLGSGKTVKGDGICRGVLLQIGNETYAEDFFPLQMGE 300

Query: 301 DDEVILGNLWLVALGKMEVDWKNLPMKLKVGKETVTLRKDPFL 344
           DDEVILGNLWLV LGKMEVDWKNL MKL+VGKE VTLRKDP L
Sbjct: 301 DDEVILGNLWLVDLGKMEVDWKNLTMKLEVGKEIVTLRKDPSL 342

[Close]

BLAST of MELO3C002493 vs. NCBI nr
Match: gi|700209468|gb|KGN64564.1| (hypothetical protein Csa_1G064860 [Cucumis sativus])

HSP 1 Score: 395.2 bits (1014), Expect = 1.2e-106
Identity = 195/236 (82.63%), Postives = 210/236 (88.98%), Query Frame = 1


Query: 1   MENPVEALDAKLKKVEDEEVHNIPTTHDNNLTTLMHQMALLLNGHQQCLPQYAPTHRMPN 60
           MENPVEAL+AKLKKVEDEEVHNIP T DNN TTL+HQMALLLN HQQ L QYAPTHRMPN
Sbjct: 1   MENPVEALEAKLKKVEDEEVHNIPIT-DNNHTTLLHQMALLLNAHQQRLLQYAPTHRMPN 60

Query: 61  LELPMFDGTDTLMWILKMERYFEVHHIDDIARMMDTILLCMSGQALAWFRCFQNWGKPPE 120
           LELPMFDGTDTLMWILKMERYFEVHHIDDIA+MM+TILLCMSGQALAWFRCFQNWG PPE
Sbjct: 61  LELPMFDGTDTLMWILKMERYFEVHHIDDIAQMMETILLCMSGQALAWFRCFQNWGNPPE 120

Query: 121 SWDEFRDSLYMRFGDARNVCSKFLGLEQEGSVEEYCSKFETLGALLPELQHVVLEAKFMN 180
           SW EFR SLY RFGD   V S+F+GL+QEGSV EYCSKFE+LGALLPEL H V+EAKFMN
Sbjct: 121 SWGEFRGSLYKRFGDGHRVLSRFIGLQQEGSVGEYCSKFESLGALLPELSHCVVEAKFMN 180

Query: 181 GLKTEIREDVRMLHPKDILDIMHRARLGEKKNNVALNSTKRKGTVKERSVIVKVVS 237
           GLKTEIR +VRML  + ILDIMHRARL E KNNVA NSTKRKGTVKE S+I+ ++S
Sbjct: 181 GLKTEIRGEVRMLDTEGILDIMHRARLAEIKNNVAFNSTKRKGTVKESSLIMIMLS 235

[Close]

BLAST of MELO3C002493 vs. NCBI nr
Match: gi|1012333702|gb|KYP45086.1| (Transposon Ty3-G Gag-Pol polyprotein [Cajanus cajan])

HSP 1 Score: 122.5 bits (306), Expect = 1.5e-24
Identity = 87/293 (29.69%), Postives = 154/293 (52.56%), Query Frame = 1


Query: 55  THRMPNLELPMFDGTDTLMWILKMERYFEVHHIDDIARMMDTILLCMSGQALAWFRCFQN 114
           T +   +ELP+F+G D   WI ++ERYF + +I+++ +M + +L+ M G+AL+W    Q 
Sbjct: 6   TEKFRKMELPIFEGEDAPGWIGRIERYFRLRNINELEKM-EVVLVAMEGEALSWL---QW 65

Query: 115 WGKPPES--WDEFRDSLYMRFGDA--RNVCSKFLGLEQEGSVEEYCSKFETLGALLPELQ 174
           W    E+  W+EF++++  RF      N     LGL+QEGS +        L  ++ E  
Sbjct: 66  WESCTENIAWEEFKEAILKRFQPTMVENSFEILLGLKQEGSNK-------MLKIMIVEDD 125

Query: 175 HVVLEAKFMNGLKTEIREDVRMLHPKDILDIMHRARLGEKKNNVALNSTKRKGTVKERSV 234
            +  E    +  K EI  +V+       L +   A L  KK      S    G + E  V
Sbjct: 126 EIGEEG---DREKEEIVWEVQFKS----LTLCSMAGLTSKK------SFMMWGEILENKV 185

Query: 235 IVKVVSWTDYNLISKNLATDLKLKLDMYGDYSVVLGSGKKVKGDGICRGVLLQIGNDTYV 294
           +V V S   +N IS  L  +L+L ++    Y V +G G+++K +G+C+G+ +++ N  + 
Sbjct: 186 LVLVDSGATHNFISTKLVENLRLSVEPTIPYYVKVGGGQRIKTNGVCKGLQMKMQNMLFK 245

Query: 295 EDFFPLQMGEDDEVILGNLWLVALGKMEVDWKNLPMKLKVGKETVTLRKDPFL 344
            DF+   + + ++++LG  WL  +G+M  ++K+L +++K      TL+ DP L
Sbjct: 246 ADFYVFAL-DGEDIVLGMEWLEDMGEMRTNFKDLTLRIKKDGIKYTLKGDPTL 273

[Close]

BLAST of MELO3C002493 vs. NCBI nr
Match: gi|985461608|ref|XP_015388504.1| (PREDICTED: uncharacterized protein LOC107178162 [Citrus sinensis])

HSP 1 Score: 112.5 bits (280), Expect = 1.5e-21
Identity = 61/166 (36.75%), Postives = 96/166 (57.83%), Query Frame = 1


Query: 51  QYAPTHRMPNLELPMFDGTDTLMWILKMERYFEVHHIDDIARMMDTILLCMSGQALAWFR 110
           Q+    R+  L++P+F+G D   W+ + ERYF ++ + +  ++M    LC+ G+ALAWF+
Sbjct: 184 QFGVDSRVRKLKMPIFEGEDAYGWVYRAERYFAINGLSEREKLM-AAALCLEGKALAWFQ 243

Query: 111 CFQNWGKPPESWDEFRDSLYMRFGDAR--NVCSKFLGLEQEGSVEEYCSKFETLGALLPE 170
            ++   +P  SW EF+D L  RF   +  ++  +F  L QE +V EY  KFE L   L  
Sbjct: 244 -WREQRQPMRSWGEFKDRLLERFQATQEGDLHEQFFALTQERTVMEYREKFELLSGRLGG 303

Query: 171 LQHVVLEAKFMNGLKTEIREDVRMLHPKDILDIMHRARLGEKKNNV 215
           L   VLE  F+ GLK EIR  +R+L P+ + + M  A++ E KN +
Sbjct: 304 LLEAVLEGNFIKGLKLEIRASLRLLRPRGLGESMELAQMIEDKNTI 347

[Close]

BLAST of MELO3C002493 vs. NCBI nr
Match: gi|565441173|ref|XP_006283085.1| (hypothetical protein CARUB_v10004097mg [Capsella rubella])

HSP 1 Score: 111.7 bits (278), Expect = 2.6e-21
Identity = 92/302 (30.46%), Postives = 139/302 (46.03%), Query Frame = 1


Query: 70  DTLMWILKMERYFEVHHIDDIARMMDTILLCMSGQALAWFRCFQNWGKP-PESWDEFRDS 129
           D   WI + E YF  ++I +  R+ + +   + G    W +    W +  P+SWDEF+  
Sbjct: 392 DMEKWIHEFENYFFQNNISEDKRL-EVVYATLQGHGGQWIK--GAWERQSPKSWDEFKLM 451

Query: 130 LYMRFGDARNVCS--KFLGLEQEGSVEEYCSKFETL---GALLPELQHVVLEAKFMNGLK 189
           +           S  KFLGL QE +V EY   FE L     LLP  Q   LEA F+  LK
Sbjct: 452 IRHELVGVSRPTSQPKFLGLLQERTVAEYRENFEALCLQSELLPGQQ---LEALFLQELK 511

Query: 190 TEIREDVRMLHPKDILDIMHRARLGEKKNNVAL--------NST---------------- 249
             ++  VR LHP  I+ +M  A+  E K  ++L        +ST                
Sbjct: 512 PSLQTAVRNLHPNGIVQMMDLAQWLEGKELMSLTMGHGDTRSSTTMERITEQSRTDFTKS 571

Query: 250 ---KRKGTVKERSVIVKVVSWTDYNLISKNLATDLKLKLDMYGDYSVVLGSGKKVKGDGI 309
              K  G++    +++ + S    N IS+ LA  L+L +      SV++G G   K  G+
Sbjct: 572 MGFKLYGSLSRNGIVLAIDSGATQNFISEELAKHLRLPIRTKRTVSVLMGHGVHNKSKGV 631

Query: 310 CRGVLLQIGNDTYVEDFFPLQMGEDD-EVILGNLWLVALGKMEVDWKNLPMKLKVGKETV 338
           C+G+ L I +   VEDF  L++ + + EVILG  WL  LG+  V+W+          + +
Sbjct: 632 CKGIKLLIDDVEIVEDFLVLELNKTEAEVILGYGWLSKLGETSVNWQERKFSFLHNHKWI 687

The following BLAST results are available for this feature:

BLAST of MELO3C002493 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LUB3_CUCSA	8.1e-107	82.63	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G064860 PE=4 SV=1	[more]
A0A151RR99_CAJCA	1.0e-24	29.69	Transposon Ty3-G Gag-Pol polyprotein OS=Cajanus cajan GN=KK1_033368 PE=4 SV=1	[more]
R0GXZ7_9BRAS	1.8e-21	30.46	Uncharacterized protein OS=Capsella rubella GN=CARUB_v10004097mg PE=4 SV=1	[more]
F6GVT4_VITVI	6.8e-21	38.46	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0083g00660 PE=4 SV=...	[more]
A0A103XJ60_CYNCS	1.2e-20	32.74	Ankyrin repeat-containing protein OS=Cynara cardunculus var. scolymus GN=Ccrd_00...	[more]

BLAST of MELO3C002493 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G42723.1	6.3e-10	25.94	aminoacyl-tRNA ligases;ATP binding;nucleotide binding	[more]

BLAST of MELO3C002493 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778658524\|ref\|XP_011652863.1\|	9.7e-170	87.17	PREDICTED: uncharacterized protein LOC105435132 [Cucumis sativus]	[more]
gi\|700209468\|gb\|KGN64564.1\|	1.2e-106	82.63	hypothetical protein Csa_1G064860 [Cucumis sativus]	[more]
gi\|1012333702\|gb\|KYP45086.1\|	1.5e-24	29.69	Transposon Ty3-G Gag-Pol polyprotein [Cajanus cajan]	[more]
gi\|985461608\|ref\|XP_015388504.1\|	1.5e-21	36.75	PREDICTED: uncharacterized protein LOC107178162 [Citrus sinensis]	[more]
gi\|565441173\|ref\|XP_006283085.1\|	2.6e-21	30.46	hypothetical protein CARUB_v10004097mg [Capsella rubella]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR005162	Retrotrans_gag_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C002493T1	MELO3C002493T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005162	Retrotransposon gag domain	PFAM	PF03732	Retrotrans_gag	coord: 99..183 score: 1.8
None	No IPR available	PANTHER	PTHR34482	FAMILY NOT NAMED	coord: 56..221 score: 6.1
None	No IPR available	PANTHER	PTHR34482:SF1	SUBFAMILY NOT NAMED	coord: 56..221 score: 6.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C002493	Csa1G064860	Cucumber (Chinese Long) v2	cumeB027
MELO3C002493	Bhi08G001438	Wax gourd	mewgoB165
MELO3C002493	CSPI01G11090	Wild cucumber (PI 183967)	cpimeB024
MELO3C002493	Cucsa.086200	Cucumber (Gy14) v1	cgymeB096
MELO3C002493	Lsi02G006470	Bottle gourd (USVL1VR-Ls)	lsimeB179
MELO3C002493	CsGy1G011020	Cucumber (Gy14) v2	cgybmeB022
MELO3C002493	CsaV3_1G011190	Cucumber (Chinese Long) v3	cucmeB024

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C002493	Cucumber (Gy14) v1	cgymeB019
MELO3C002493	Cucurbita maxima (Rimu)	cmameB192
MELO3C002493	Cucurbita maxima (Rimu)	cmameB356
MELO3C002493	Cucurbita maxima (Rimu)	cmameB393
MELO3C002493	Cucurbita maxima (Rimu)	cmameB591
MELO3C002493	Cucurbita maxima (Rimu)	cmameB782
MELO3C002493	Cucurbita moschata (Rifu)	cmomeB179
MELO3C002493	Cucurbita moschata (Rifu)	cmomeB356
MELO3C002493	Cucurbita moschata (Rifu)	cmomeB581
MELO3C002493	Cucurbita moschata (Rifu)	cmomeB772
MELO3C002493	Wild cucumber (PI 183967)	cpimeB453
MELO3C002493	Cucumber (Chinese Long) v2	cumeB458
MELO3C002493	Watermelon (Charleston Gray)	mewcgB138
MELO3C002493	Watermelon (Charleston Gray)	mewcgB146
MELO3C002493	Watermelon (Charleston Gray)	mewcgB152
MELO3C002493	Watermelon (97103) v1	mewmB149
MELO3C002493	Watermelon (97103) v1	mewmB167
MELO3C002493	Watermelon (97103) v1	mewmB177
MELO3C002493	Cucurbita pepo (Zucchini)	cpemeB026
MELO3C002493	Cucurbita pepo (Zucchini)	cpemeB049
MELO3C002493	Cucurbita pepo (Zucchini)	cpemeB216
MELO3C002493	Cucurbita pepo (Zucchini)	cpemeB438
MELO3C002493	Cucurbita pepo (Zucchini)	cpemeB477
MELO3C002493	Bottle gourd (USVL1VR-Ls)	lsimeB090
MELO3C002493	Bottle gourd (USVL1VR-Ls)	lsimeB127
MELO3C002493	Bottle gourd (USVL1VR-Ls)	lsimeB183
MELO3C002493	Cucumber (Gy14) v2	cgybmeB397
MELO3C002493	Silver-seed gourd	carmeB0639
MELO3C002493	Silver-seed gourd	carmeB0795
MELO3C002493	Silver-seed gourd	carmeB0914
MELO3C002493	Silver-seed gourd	carmeB0977
MELO3C002493	Cucumber (Chinese Long) v3	cucmeB464
MELO3C002493	Watermelon (97103) v2	mewmbB156
MELO3C002493	Watermelon (97103) v2	mewmbB140
MELO3C002493	Watermelon (97103) v2	mewmbB158
MELO3C002493	Wax gourd	mewgoB156
MELO3C002493	Melon (DHL92) v3.5.1	memeB075
MELO3C002493	Melon (DHL92) v3.5.1	memeB064