LsiUNG001510 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	LsiUNG001510
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Response to low sulfur protein, putative
Location	chr00 : 3553737 .. 3554060 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAGTCCTGAAATCAGCTGTGGATGACTCAATGAGCTTGAGCCTGAGGAGGAGGAATGAAGAGCTGGAGAAGGAACTGGAGGCGAGCCAGGAAAGAGAGCAGGTTATGAGGGAGCAGCTGAAAAGGGCTTGGGAAAGGCTTAAGGTGGCAGAGGAGGCGGAGGAGAGGCTTTCGTCGCAGCTTGGGGAGCTCGAGGCAGAGGCTCTAGCCCAGGCTCGTGATTACCACCAACAAATCACATCGTTGATGAACCAGCTTTCCCAGGCTCATAAACTGCTGCAAGCTGCCTCCACATCCCATTCCATCGCCTCCTTTACATAG

mRNA sequence

ATGGGAGTCCTGAAATCAGCTGTGGATGACTCAATGAGCTTGAGCCTGAGGAGGAGGAATGAAGAGCTGGAGAAGGAACTGGAGGCGAGCCAGGAAAGAGAGCAGGTTATGAGGGAGCAGCTGAAAAGGGCTTGGGAAAGGCTTAAGGTGGCAGAGGAGGCGGAGGAGAGGCTTTCGTCGCAGCTTGGGGAGCTCGAGGCAGAGGCTCTAGCCCAGGCTCGTGATTACCACCAACAAATCACATCGTTGATGAACCAGCTTTCCCAGGCTCATAAACTGCTGCAAGCTGCCTCCACATCCCATTCCATCGCCTCCTTTACATAG

Coding sequence (CDS)

ATGGGAGTCCTGAAATCAGCTGTGGATGACTCAATGAGCTTGAGCCTGAGGAGGAGGAATGAAGAGCTGGAGAAGGAACTGGAGGCGAGCCAGGAAAGAGAGCAGGTTATGAGGGAGCAGCTGAAAAGGGCTTGGGAAAGGCTTAAGGTGGCAGAGGAGGCGGAGGAGAGGCTTTCGTCGCAGCTTGGGGAGCTCGAGGCAGAGGCTCTAGCCCAGGCTCGTGATTACCACCAACAAATCACATCGTTGATGAACCAGCTTTCCCAGGCTCATAAACTGCTGCAAGCTGCCTCCACATCCCATTCCATCGCCTCCTTTACATAG

Protein sequence

MGVLKSAVDDSMSLSLRRRNEELEKELEASQEREQVMREQLKRAWERLKVAEEAEERLSSQLGELEAEALAQARDYHQQITSLMNQLSQAHKLLQAASTSHSIASFT

Homology

[Close]

BLAST of LsiUNG001510 vs. TrEMBL
Match: A0A0A0KN32_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G139070 PE=4 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 1.5e-27
Identity = 83/107 (77.57%), Postives = 90/107 (84.11%), Query Frame = 1


Query: 1   MGVLKSAVDDSMSLSLRRRNEELEKELEASQEREQVMREQLKRAWERLKVAEEAEERLSS 60
           MGVLK    +S+SL  +RRNEELEKELEAS ERE +MR++L+R  ERLKVAEEAEERLS 
Sbjct: 1   MGVLKPGGVESVSL--KRRNEELEKELEASHERELIMRKELRRVCERLKVAEEAEERLSL 60

Query: 61  QLGELEAEALAQARDYHQQITSLMNQLSQAHKLLQAASTSHSIASFT 108
           QLGELEAEAL QARDYHQQITSLMNQLS AHKLLQAA    SIASFT
Sbjct: 61  QLGELEAEALTQARDYHQQITSLMNQLSHAHKLLQAA----SIASFT 101

[Close]

BLAST of LsiUNG001510 vs. TrEMBL
Match: G7J9Q1_MEDTR (Response to low sulfur protein, putative OS=Medicago truncatula GN=MTR_3g093400 PE=2 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 2.6e-19
Identity = 59/85 (69.41%), Postives = 73/85 (85.88%), Query Frame = 1


Query: 16  LRRRNEELEKELEASQEREQVMREQLKRAWERLKVAEEAEERLSSQLGELEAEALAQARD 75
           L+RRN++LEKEL+ S+ERE+ MR QL+ AWERL+VAEEAEERL SQLGELEAEA+ QARD
Sbjct: 31  LKRRNDQLEKELKESKEREEQMRRQLQSAWERLRVAEEAEERLCSQLGELEAEAVYQARD 90

Query: 76  YHQQITSLMNQLSQAHKLLQAASTS 101
           YH +I SLM+QLS+A  LL  AS++
Sbjct: 91  YHDRIVSLMDQLSRAQSLLHIASSN 115

[Close]

BLAST of LsiUNG001510 vs. TrEMBL
Match: A9PHK8_POPTR (Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 5.8e-19
Identity = 58/91 (63.74%), Postives = 73/91 (80.22%), Query Frame = 1


Query: 4  LKSAVDDSMSLSLRRRNEELEKELEASQEREQVMREQLKRAWERLKVAEEAEERLSSQLG 63
          L   V D   + L++RNEELEK L+ S++RE+ M+ +L+RAWERL+VAEEAEERL SQLG
Sbjct: 3  LMGTVKDGEEIMLKKRNEELEKALKESKQREEKMKSELQRAWERLQVAEEAEERLCSQLG 62

Query: 64 ELEAEALAQARDYHQQITSLMNQLSQAHKLL 95
          ELEAEA++ ARD H +I SLMN+LSQAH LL
Sbjct: 63 ELEAEAVSHARDCHARILSLMNELSQAHNLL 93

[Close]

BLAST of LsiUNG001510 vs. TrEMBL
Match: B9I2B4_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s00390g PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 5.8e-19
Identity = 58/91 (63.74%), Postives = 73/91 (80.22%), Query Frame = 1


Query: 4  LKSAVDDSMSLSLRRRNEELEKELEASQEREQVMREQLKRAWERLKVAEEAEERLSSQLG 63
          L   V D   + L++RNEELEK L+ S++RE+ M+ +L+RAWERL+VAEEAEERL SQLG
Sbjct: 3  LMGTVKDGEEMMLKKRNEELEKALKESKQREEKMKSELQRAWERLQVAEEAEERLCSQLG 62

Query: 64 ELEAEALAQARDYHQQITSLMNQLSQAHKLL 95
          ELEAEA++ ARD H +I SLMN+LSQAH LL
Sbjct: 63 ELEAEAVSHARDCHARILSLMNELSQAHNLL 93

[Close]

BLAST of LsiUNG001510 vs. TrEMBL
Match: F6H7A8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_16s0098g00600 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 5.8e-19
Identity = 60/84 (71.43%), Postives = 72/84 (85.71%), Query Frame = 1


Query: 16  LRRRNEELEKELEASQEREQVMREQLKRAWERLKVAEEAEERLSSQLGELEAEALAQARD 75
           LRRRNEELE+EL+ SQ+RE+ MR +L+RA ERL+VAEEAEERL SQLGELEAEA+ QAR 
Sbjct: 50  LRRRNEELEEELKKSQDREERMRRELERARERLRVAEEAEERLCSQLGELEAEAVDQARQ 109

Query: 76  YHQQITSLMNQLSQAHKLLQAAST 100
           Y+ +I SLMNQLSQAH+L+Q   T
Sbjct: 110 YNNRIVSLMNQLSQAHRLIQPGPT 133

[Close]

BLAST of LsiUNG001510 vs. TAIR10
Match: AT5G24660.1 (AT5G24660.1 response to low sulfur 2)

HSP 1 Score: 67.4 bits (163), Expect = 6.1e-12
Identity = 45/87 (51.72%), Postives = 59/87 (67.82%), Query Frame = 1


Query: 3  VLKSAVDDSMSLSLRRRNEELEKELEASQEREQVMREQLKRAWERLKVAEEAEERLSSQL 62
          V  S VD+     LRR+N E+EK +E        M++++ + W R +VAEEAEERL SQL
Sbjct: 10 VAASEVDE-----LRRKNGEMEKAVEE-------MKKEMLQLWRRTQVAEEAEERLCSQL 69

Query: 63 GELEAEALAQARDYHQQITSLMNQLSQ 90
           ELEAE+L QARDYH +I  LMN+LS+
Sbjct: 70 AELEAESLDQARDYHSRIIFLMNELSR 84

[Close]

BLAST of LsiUNG001510 vs. TAIR10
Match: AT3G49570.1 (AT3G49570.1 response to low sulfur 3)

HSP 1 Score: 66.6 bits (161), Expect = 1.0e-11
Identity = 41/74 (55.41%), Postives = 53/74 (71.62%), Query Frame = 1


Query: 16 LRRRNEELEKELEASQEREQVMREQLKRAWERLKVAEEAEERLSSQLGELEAEALAQARD 75
          LRRRN ELE+E+E        M++++ + W R  VAEEAEERL SQL ELE E+L QARD
Sbjct: 18 LRRRNGELEREMEE-------MKKEMVQLWRRTVVAEEAEERLCSQLAELEVESLDQARD 77

Query: 76 YHQQITSLMNQLSQ 90
          YH +I  LM+Q+S+
Sbjct: 78 YHSRIVFLMDQISR 84

[Close]

BLAST of LsiUNG001510 vs. TAIR10
Match: AT5G24655.1 (AT5G24655.1 response to low sulfur 4)

HSP 1 Score: 63.2 bits (152), Expect = 1.2e-10
Identity = 40/74 (54.05%), Postives = 52/74 (70.27%), Query Frame = 1


Query: 16 LRRRNEELEKELEASQEREQVMREQLKRAWERLKVAEEAEERLSSQLGELEAEALAQARD 75
          LR++N E+EK +E        MR+++ + W R +VAEEAEE L SQL ELEAE+L QARD
Sbjct: 18 LRQKNGEMEKAVEE-------MRKEMLQLWRRTQVAEEAEEHLCSQLAELEAESLDQARD 77

Query: 76 YHQQITSLMNQLSQ 90
          YH +I  L NQLS+
Sbjct: 78 YHTRIIFLTNQLSR 84

[Close]

BLAST of LsiUNG001510 vs. TAIR10
Match: AT3G49580.1 (AT3G49580.1 response to low sulfur 1)

HSP 1 Score: 58.9 bits (141), Expect = 2.2e-09
Identity = 37/74 (50.00%), Postives = 51/74 (68.92%), Query Frame = 1


Query: 16 LRRRNEELEKELEASQEREQVMREQLKRAWERLKVAEEAEERLSSQLGELEAEALAQARD 75
          LRRRN EL +E+         M+ ++ + W+R  VAEEAEE+L SQL ELE E+L QARD
Sbjct: 18 LRRRNIELSREVAE-------MKTEMIKLWQRTVVAEEAEEQLCSQLAELEVESLEQARD 77

Query: 76 YHQQITSLMNQLSQ 90
          YH ++  LM+Q+S+
Sbjct: 78 YHDRMLFLMDQISR 84

[Close]

BLAST of LsiUNG001510 vs. NCBI nr
Match: gi|659074540|ref|XP_008437659.1| (PREDICTED: uncharacterized protein LOC103482998 [Cucumis melo])

HSP 1 Score: 135.2 bits (339), Expect = 6.8e-29
Identity = 87/107 (81.31%), Postives = 91/107 (85.05%), Query Frame = 1


Query: 1   MGVLKSAVDDSMSLSLRRRNEELEKELEASQEREQVMREQLKRAWERLKVAEEAEERLSS 60
           MGVLKS   +S+SL   RRNEELEKELEASQERE VMRE+L+R  ERLKVAEEAEERLS 
Sbjct: 1   MGVLKSGGVESVSLG--RRNEELEKELEASQERELVMREELRRVCERLKVAEEAEERLSL 60

Query: 61  QLGELEAEALAQARDYHQQITSLMNQLSQAHKLLQAASTSHSIASFT 108
           QLGELEAEAL QARDYHQQITSLMNQLS AHKLLQAA    SIASFT
Sbjct: 61  QLGELEAEALTQARDYHQQITSLMNQLSHAHKLLQAA----SIASFT 101

[Close]

BLAST of LsiUNG001510 vs. NCBI nr
Match: gi|778698698|ref|XP_011654590.1| (PREDICTED: uncharacterized protein LOC105435419 [Cucumis sativus])

HSP 1 Score: 130.2 bits (326), Expect = 2.2e-27
Identity = 83/107 (77.57%), Postives = 90/107 (84.11%), Query Frame = 1


Query: 1   MGVLKSAVDDSMSLSLRRRNEELEKELEASQEREQVMREQLKRAWERLKVAEEAEERLSS 60
           MGVLK    +S+SL  +RRNEELEKELEAS ERE +MR++L+R  ERLKVAEEAEERLS 
Sbjct: 1   MGVLKPGGVESVSL--KRRNEELEKELEASHERELIMRKELRRVCERLKVAEEAEERLSL 60

Query: 61  QLGELEAEALAQARDYHQQITSLMNQLSQAHKLLQAASTSHSIASFT 108
           QLGELEAEAL QARDYHQQITSLMNQLS AHKLLQAA    SIASFT
Sbjct: 61  QLGELEAEALTQARDYHQQITSLMNQLSHAHKLLQAA----SIASFT 101

[Close]

BLAST of LsiUNG001510 vs. NCBI nr
Match: gi|1009123610|ref|XP_015878630.1| (PREDICTED: uncharacterized protein LOC107414934 [Ziziphus jujuba])

HSP 1 Score: 103.6 bits (257), Expect = 2.2e-19
Identity = 62/98 (63.27%), Postives = 78/98 (79.59%), Query Frame = 1


Query: 1  MGVLKSAVDDSMSLSLRRRNEELEKELEASQEREQVMREQLKRAWERLKVAEEAEERLSS 60
          MGV+K  VD      LR+RNEELE EL+ S ERE+ MR +L++AW RL++AEEAEERL S
Sbjct: 1  MGVIKQNVDGE---ELRKRNEELESELKKSLEREEKMRAELQKAWHRLRIAEEAEERLCS 60

Query: 61 QLGELEAEALAQARDYHQQITSLMNQLSQAHKLLQAAS 99
          QLGELEAE++ QAR YH +I +LM+QLSQA +LLQA+S
Sbjct: 61 QLGELEAESVDQARSYHGRIVTLMDQLSQAQQLLQASS 95

[Close]

BLAST of LsiUNG001510 vs. NCBI nr
Match: gi|357464321|ref|XP_003602442.1| (response to low sulfur protein, putative [Medicago truncatula])

HSP 1 Score: 102.8 bits (255), Expect = 3.7e-19
Identity = 59/85 (69.41%), Postives = 73/85 (85.88%), Query Frame = 1


Query: 16  LRRRNEELEKELEASQEREQVMREQLKRAWERLKVAEEAEERLSSQLGELEAEALAQARD 75
           L+RRN++LEKEL+ S+ERE+ MR QL+ AWERL+VAEEAEERL SQLGELEAEA+ QARD
Sbjct: 31  LKRRNDQLEKELKESKEREEQMRRQLQSAWERLRVAEEAEERLCSQLGELEAEAVYQARD 90

Query: 76  YHQQITSLMNQLSQAHKLLQAASTS 101
           YH +I SLM+QLS+A  LL  AS++
Sbjct: 91  YHDRIVSLMDQLSRAQSLLHIASSN 115

[Close]

BLAST of LsiUNG001510 vs. NCBI nr
Match: gi|224121134|ref|XP_002318506.1| (hypothetical protein POPTR_0012s00390g [Populus trichocarpa])

HSP 1 Score: 101.7 bits (252), Expect = 8.3e-19
Identity = 58/91 (63.74%), Postives = 73/91 (80.22%), Query Frame = 1


Query: 4  LKSAVDDSMSLSLRRRNEELEKELEASQEREQVMREQLKRAWERLKVAEEAEERLSSQLG 63
          L   V D   + L++RNEELEK L+ S++RE+ M+ +L+RAWERL+VAEEAEERL SQLG
Sbjct: 3  LMGTVKDGEEMMLKKRNEELEKALKESKQREEKMKSELQRAWERLQVAEEAEERLCSQLG 62

Query: 64 ELEAEALAQARDYHQQITSLMNQLSQAHKLL 95
          ELEAEA++ ARD H +I SLMN+LSQAH LL
Sbjct: 63 ELEAEAVSHARDCHARILSLMNELSQAHNLL 93

The following BLAST results are available for this feature:

BLAST of LsiUNG001510 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of LsiUNG001510 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KN32_CUCSA	1.5e-27	77.57	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G139070 PE=4 SV=1	[more]
G7J9Q1_MEDTR	2.6e-19	69.41	Response to low sulfur protein, putative OS=Medicago truncatula GN=MTR_3g093400 ...	[more]
A9PHK8_POPTR	5.8e-19	63.74	Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1	[more]
B9I2B4_POPTR	5.8e-19	63.74	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s00390g PE=4 SV=1	[more]
F6H7A8_VITVI	5.8e-19	71.43	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_16s0098g00600 PE=4 SV=...	[more]

BLAST of LsiUNG001510 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G24660.1	6.1e-12	51.72	response to low sulfur 2	[more]
AT3G49570.1	1.0e-11	55.41	response to low sulfur 3	[more]
AT5G24655.1	1.2e-10	54.05	response to low sulfur 4	[more]
AT3G49580.1	2.2e-09	50.00	response to low sulfur 1	[more]

BLAST of LsiUNG001510 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659074540\|ref\|XP_008437659.1\|	6.8e-29	81.31	PREDICTED: uncharacterized protein LOC103482998 [Cucumis melo]	[more]
gi\|778698698\|ref\|XP_011654590.1\|	2.2e-27	77.57	PREDICTED: uncharacterized protein LOC105435419 [Cucumis sativus]	[more]
gi\|1009123610\|ref\|XP_015878630.1\|	2.2e-19	63.27	PREDICTED: uncharacterized protein LOC107414934 [Ziziphus jujuba]	[more]
gi\|357464321\|ref\|XP_003602442.1\|	3.7e-19	69.41	response to low sulfur protein, putative [Medicago truncatula]	[more]
gi\|224121134\|ref\|XP_002318506.1\|	8.3e-19	63.74	hypothetical protein POPTR_0012s00390g [Populus trichocarpa]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0033554	cellular response to stress
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
LsiUNG001510.1	LsiUNG001510.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 48..68 score: -coord: 13..40 scor
None	No IPR available	PANTHER	PTHR34283	FAMILY NOT NAMED	coord: 16..100 score: 1.9
None	No IPR available	PANTHER	PTHR34283:SF1	SUBFAMILY NOT NAMED	coord: 16..100 score: 1.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
LsiUNG001510	Csa5G139070	Cucumber (Chinese Long) v2	culsiB321
LsiUNG001510	CSPI05G02830	Wild cucumber (PI 183967)	cpilsiB321
LsiUNG001510	Cucsa.202460	Cucumber (Gy14) v1	cgylsiB345
LsiUNG001510	Cla000310	Watermelon (97103) v1	lsiwmB000
LsiUNG001510	MELO3C005916	Melon (DHL92) v3.5.1	lsimeB000
LsiUNG001510	ClCG01G000030	Watermelon (Charleston Gray)	lsiwcgB002
LsiUNG001510	Cla97C01G000020	Watermelon (97103) v2	lsiwmbB000
LsiUNG001510	Bhi12G000609	Wax gourd	lsiwgoB001
LsiUNG001510	CsGy5G000110	Cucumber (Gy14) v2	cgyblsiB293
LsiUNG001510	CsaV3_5G000160	Cucumber (Chinese Long) v3	cuclsiB344

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
LsiUNG001510	Cucurbita maxima (Rimu)	cmalsiB260
LsiUNG001510	Cucurbita moschata (Rifu)	cmolsiB247
LsiUNG001510	Cucurbita pepo (Zucchini)	cpelsiB129
LsiUNG001510	Melon (DHL92) v3.6.1	lsimedB000