Cla000310 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla000310
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1)
Location	Chr0 : 23386597 .. 23386914 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAGTCCTGAAATCAGCTGGGGTTGACTCAATGAGCCTGAGGAGGAGGAATGAAGAGCTGGAGAAGGAACTGGAGGCGAGCCAGGAAAGAGAGCAGGTTATGAGGGAGCAGCTGAAAAGGGCTTGGGAAAGGCTTAAGGTGGCAGAGGAGGCGGAGGAGAGGCTTTCGTCGCAGCTCGGGGAGCTTGAGGCAGAGGCTCTAGCCCAGGCTCGTGATTACCACCAACAAATCACATCGTTGATGAACCAGCTTTCCCAGGCTCATAAACTGCTGCAAGCTGCCTCCACCTCCCATTCCATCACCTCCTTTACATAG

mRNA sequence

ATGGGAGTCCTGAAATCAGCTGGGGTTGACTCAATGAGCCTGAGGAGGAGGAATGAAGAGCTGGAGAAGGAACTGGAGGCGAGCCAGGAAAGAGAGCAGGTTATGAGGGAGCAGCTGAAAAGGGCTTGGGAAAGGCTTAAGGTGGCAGAGGAGGCGGAGGAGAGGCTTTCGTCGCAGCTCGGGGAGCTTGAGGCAGAGGCTCTAGCCCAGGCTCGTGATTACCACCAACAAATCACATCGTTGATGAACCAGCTTTCCCAGGCTCATAAACTGCTGCAAGCTGCCTCCACCTCCCATTCCATCACCTCCTTTACATAG

Coding sequence (CDS)

ATGGGAGTCCTGAAATCAGCTGGGGTTGACTCAATGAGCCTGAGGAGGAGGAATGAAGAGCTGGAGAAGGAACTGGAGGCGAGCCAGGAAAGAGAGCAGGTTATGAGGGAGCAGCTGAAAAGGGCTTGGGAAAGGCTTAAGGTGGCAGAGGAGGCGGAGGAGAGGCTTTCGTCGCAGCTCGGGGAGCTTGAGGCAGAGGCTCTAGCCCAGGCTCGTGATTACCACCAACAAATCACATCGTTGATGAACCAGCTTTCCCAGGCTCATAAACTGCTGCAAGCTGCCTCCACCTCCCATTCCATCACCTCCTTTACATAG

Protein sequence

MGVLKSAGVDSMSLRRRNEELEKELEASQEREQVMREQLKRAWERLKVAEEAEERLSSQLGELEAEALAQARDYHQQITSLMNQLSQAHKLLQAASTSHSITSFT

Homology

[Close]

BLAST of Cla000310 vs. TrEMBL
Match: A0A0A0KN32_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G139070 PE=4 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 5.7e-35
Identity = 84/105 (80.00%), Postives = 91/105 (86.67%), Query Frame = 1


Query: 1   MGVLKSAGVDSMSLRRRNEELEKELEASQEREQVMREQLKRAWERLKVAEEAEERLSSQL 60
           MGVLK  GV+S+SL+RRNEELEKELEAS ERE +MR++L+R  ERLKVAEEAEERLS QL
Sbjct: 1   MGVLKPGGVESVSLKRRNEELEKELEASHERELIMRKELRRVCERLKVAEEAEERLSLQL 60

Query: 61  GELEAEALAQARDYHQQITSLMNQLSQAHKLLQAASTSHSITSFT 106
           GELEAEAL QARDYHQQITSLMNQLS AHKLLQAA    SI SFT
Sbjct: 61  GELEAEALTQARDYHQQITSLMNQLSHAHKLLQAA----SIASFT 101

[Close]

BLAST of Cla000310 vs. TrEMBL
Match: G7J9Q1_MEDTR (Response to low sulfur protein, putative OS=Medicago truncatula GN=MTR_3g093400 PE=2 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 5.9e-24
Identity = 60/90 (66.67%), Postives = 74/90 (82.22%), Query Frame = 1


Query: 9   VDSMSLRRRNEELEKELEASQEREQVMREQLKRAWERLKVAEEAEERLSSQLGELEAEAL 68
           V    L+RRN++LEKEL+ S+ERE+ MR QL+ AWERL+VAEEAEERL SQLGELEAEA+
Sbjct: 26  VPESELKRRNDQLEKELKESKEREEQMRRQLQSAWERLRVAEEAEERLCSQLGELEAEAV 85

Query: 69  AQARDYHQQITSLMNQLSQAHKLLQAASTS 99
            QARDYH +I SLM+QLS+A  LL  AS++
Sbjct: 86  YQARDYHDRIVSLMDQLSRAQSLLHIASSN 115

[Close]

BLAST of Cla000310 vs. TrEMBL
Match: A0A151SG23_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_024368 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 7.7e-24
Identity = 61/95 (64.21%), Postives = 75/95 (78.95%), Query Frame = 1


Query: 7   AGVDSMSLRRRNEELEKELEASQEREQVMREQLKRAWERLKVAEEAEERLSSQLGELEAE 66
           A  +   L++RNEELEKEL  S+ERE+ M+ QL+ AWERL+VAEEAEERL SQLGELEAE
Sbjct: 22  AAAEESELKKRNEELEKELRESKEREEQMKRQLQSAWERLRVAEEAEERLCSQLGELEAE 81

Query: 67  ALAQARDYHQQITSLMNQLSQAHKLLQAASTSHSI 102
           A+ QARDYH +I SLM+QLS+A  LL   +T+ SI
Sbjct: 82  AVYQARDYHARIVSLMDQLSRAQGLLLNKNTASSI 116

[Close]

BLAST of Cla000310 vs. TrEMBL
Match: F6H7A8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_16s0098g00600 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 2.2e-23
Identity = 60/84 (71.43%), Postives = 72/84 (85.71%), Query Frame = 1


Query: 14  LRRRNEELEKELEASQEREQVMREQLKRAWERLKVAEEAEERLSSQLGELEAEALAQARD 73
           LRRRNEELE+EL+ SQ+RE+ MR +L+RA ERL+VAEEAEERL SQLGELEAEA+ QAR 
Sbjct: 50  LRRRNEELEEELKKSQDREERMRRELERARERLRVAEEAEERLCSQLGELEAEAVDQARQ 109

Query: 74  YHQQITSLMNQLSQAHKLLQAAST 98
           Y+ +I SLMNQLSQAH+L+Q   T
Sbjct: 110 YNNRIVSLMNQLSQAHRLIQPGPT 133

[Close]

BLAST of Cla000310 vs. TrEMBL
Match: B9I2B4_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s00390g PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 3.8e-23
Identity = 59/92 (64.13%), Postives = 75/92 (81.52%), Query Frame = 1


Query: 1  MGVLKSAGVDSMSLRRRNEELEKELEASQEREQVMREQLKRAWERLKVAEEAEERLSSQL 60
          MG +K    + M L++RNEELEK L+ S++RE+ M+ +L+RAWERL+VAEEAEERL SQL
Sbjct: 4  MGTVKDG--EEMMLKKRNEELEKALKESKQREEKMKSELQRAWERLQVAEEAEERLCSQL 63

Query: 61 GELEAEALAQARDYHQQITSLMNQLSQAHKLL 93
          GELEAEA++ ARD H +I SLMN+LSQAH LL
Sbjct: 64 GELEAEAVSHARDCHARILSLMNELSQAHNLL 93

[Close]

BLAST of Cla000310 vs. TAIR10
Match: AT3G49570.1 (AT3G49570.1 response to low sulfur 3)

HSP 1 Score: 79.0 bits (193), Expect = 2.0e-15
Identity = 43/86 (50.00%), Postives = 55/86 (63.95%), Query Frame = 1


Query: 2  GVLKSAGVDSMSLRRRNEELEKELEASQEREQVMREQLKRAWERLKVAEEAEERLSSQLG 61
          G +  A  +   LRRRN ELE+E+E        M++++ + W R  VAEEAEERL SQL 
Sbjct: 6  GYVTVAAEEVEELRRRNGELEREMEE-------MKKEMVQLWRRTVVAEEAEERLCSQLA 65

Query: 62 ELEAEALAQARDYHQQITSLMNQLSQ 88
          ELE E+L QARDYH +I  LM+Q+S+
Sbjct: 66 ELEVESLDQARDYHSRIVFLMDQISR 84

[Close]

BLAST of Cla000310 vs. TAIR10
Match: AT5G24660.1 (AT5G24660.1 response to low sulfur 2)

HSP 1 Score: 78.2 bits (191), Expect = 3.4e-15
Identity = 41/74 (55.41%), Postives = 52/74 (70.27%), Query Frame = 1


Query: 14 LRRRNEELEKELEASQEREQVMREQLKRAWERLKVAEEAEERLSSQLGELEAEALAQARD 73
          LRR+N E+EK +E        M++++ + W R +VAEEAEERL SQL ELEAE+L QARD
Sbjct: 18 LRRKNGEMEKAVEE-------MKKEMLQLWRRTQVAEEAEERLCSQLAELEAESLDQARD 77

Query: 74 YHQQITSLMNQLSQ 88
          YH +I  LMN+LS+
Sbjct: 78 YHSRIIFLMNELSR 84

[Close]

BLAST of Cla000310 vs. TAIR10
Match: AT5G24655.1 (AT5G24655.1 response to low sulfur 4)

HSP 1 Score: 74.3 bits (181), Expect = 4.9e-14
Identity = 40/74 (54.05%), Postives = 50/74 (67.57%), Query Frame = 1


Query: 14 LRRRNEELEKELEASQEREQVMREQLKRAWERLKVAEEAEERLSSQLGELEAEALAQARD 73
          LR++N E+EK +E        MR+++ + W R +VAEEAEE L SQL ELEAE+L QARD
Sbjct: 18 LRQKNGEMEKAVEE-------MRKEMLQLWRRTQVAEEAEEHLCSQLAELEAESLDQARD 77

Query: 74 YHQQITSLMNQLSQ 88
          YH +I  L NQLS+
Sbjct: 78 YHTRIIFLTNQLSR 84

[Close]

BLAST of Cla000310 vs. TAIR10
Match: AT3G49580.1 (AT3G49580.1 response to low sulfur 1)

HSP 1 Score: 71.2 bits (173), Expect = 4.2e-13
Identity = 39/86 (45.35%), Postives = 53/86 (61.63%), Query Frame = 1


Query: 2  GVLKSAGVDSMSLRRRNEELEKELEASQEREQVMREQLKRAWERLKVAEEAEERLSSQLG 61
          G +  A  +   LRRRN EL +E+         M+ ++ + W+R  VAEEAEE+L SQL 
Sbjct: 6  GCVTVAAEEMDELRRRNIELSREVAE-------MKTEMIKLWQRTVVAEEAEEQLCSQLA 65

Query: 62 ELEAEALAQARDYHQQITSLMNQLSQ 88
          ELE E+L QARDYH ++  LM+Q+S+
Sbjct: 66 ELEVESLEQARDYHDRMLFLMDQISR 84

[Close]

BLAST of Cla000310 vs. NCBI nr
Match: gi|659074540|ref|XP_008437659.1| (PREDICTED: uncharacterized protein LOC103482998 [Cucumis melo])

HSP 1 Score: 159.1 bits (401), Expect = 4.3e-36
Identity = 88/105 (83.81%), Postives = 92/105 (87.62%), Query Frame = 1


Query: 1   MGVLKSAGVDSMSLRRRNEELEKELEASQEREQVMREQLKRAWERLKVAEEAEERLSSQL 60
           MGVLKS GV+S+SL RRNEELEKELEASQERE VMRE+L+R  ERLKVAEEAEERLS QL
Sbjct: 1   MGVLKSGGVESVSLGRRNEELEKELEASQERELVMREELRRVCERLKVAEEAEERLSLQL 60

Query: 61  GELEAEALAQARDYHQQITSLMNQLSQAHKLLQAASTSHSITSFT 106
           GELEAEAL QARDYHQQITSLMNQLS AHKLLQAA    SI SFT
Sbjct: 61  GELEAEALTQARDYHQQITSLMNQLSHAHKLLQAA----SIASFT 101

[Close]

BLAST of Cla000310 vs. NCBI nr
Match: gi|778698698|ref|XP_011654590.1| (PREDICTED: uncharacterized protein LOC105435419 [Cucumis sativus])

HSP 1 Score: 154.8 bits (390), Expect = 8.1e-35
Identity = 84/105 (80.00%), Postives = 91/105 (86.67%), Query Frame = 1


Query: 1   MGVLKSAGVDSMSLRRRNEELEKELEASQEREQVMREQLKRAWERLKVAEEAEERLSSQL 60
           MGVLK  GV+S+SL+RRNEELEKELEAS ERE +MR++L+R  ERLKVAEEAEERLS QL
Sbjct: 1   MGVLKPGGVESVSLKRRNEELEKELEASHERELIMRKELRRVCERLKVAEEAEERLSLQL 60

Query: 61  GELEAEALAQARDYHQQITSLMNQLSQAHKLLQAASTSHSITSFT 106
           GELEAEAL QARDYHQQITSLMNQLS AHKLLQAA    SI SFT
Sbjct: 61  GELEAEALTQARDYHQQITSLMNQLSHAHKLLQAA----SIASFT 101

[Close]

BLAST of Cla000310 vs. NCBI nr
Match: gi|1009123610|ref|XP_015878630.1| (PREDICTED: uncharacterized protein LOC107414934 [Ziziphus jujuba])

HSP 1 Score: 119.4 bits (298), Expect = 3.8e-24
Identity = 62/96 (64.58%), Postives = 78/96 (81.25%), Query Frame = 1


Query: 1  MGVLKSAGVDSMSLRRRNEELEKELEASQEREQVMREQLKRAWERLKVAEEAEERLSSQL 60
          MGV+K   VD   LR+RNEELE EL+ S ERE+ MR +L++AW RL++AEEAEERL SQL
Sbjct: 1  MGVIKQ-NVDGEELRKRNEELESELKKSLEREEKMRAELQKAWHRLRIAEEAEERLCSQL 60

Query: 61 GELEAEALAQARDYHQQITSLMNQLSQAHKLLQAAS 97
          GELEAE++ QAR YH +I +LM+QLSQA +LLQA+S
Sbjct: 61 GELEAESVDQARSYHGRIVTLMDQLSQAQQLLQASS 95

[Close]

BLAST of Cla000310 vs. NCBI nr
Match: gi|357464321|ref|XP_003602442.1| (response to low sulfur protein, putative [Medicago truncatula])

HSP 1 Score: 118.2 bits (295), Expect = 8.4e-24
Identity = 60/90 (66.67%), Postives = 74/90 (82.22%), Query Frame = 1


Query: 9   VDSMSLRRRNEELEKELEASQEREQVMREQLKRAWERLKVAEEAEERLSSQLGELEAEAL 68
           V    L+RRN++LEKEL+ S+ERE+ MR QL+ AWERL+VAEEAEERL SQLGELEAEA+
Sbjct: 26  VPESELKRRNDQLEKELKESKEREEQMRRQLQSAWERLRVAEEAEERLCSQLGELEAEAV 85

Query: 69  AQARDYHQQITSLMNQLSQAHKLLQAASTS 99
            QARDYH +I SLM+QLS+A  LL  AS++
Sbjct: 86  YQARDYHDRIVSLMDQLSRAQSLLHIASSN 115

[Close]

BLAST of Cla000310 vs. NCBI nr
Match: gi|1012342601|gb|KYP53794.1| (hypothetical protein KK1_024368 [Cajanus cajan])

HSP 1 Score: 117.9 bits (294), Expect = 1.1e-23
Identity = 61/95 (64.21%), Postives = 75/95 (78.95%), Query Frame = 1


Query: 7   AGVDSMSLRRRNEELEKELEASQEREQVMREQLKRAWERLKVAEEAEERLSSQLGELEAE 66
           A  +   L++RNEELEKEL  S+ERE+ M+ QL+ AWERL+VAEEAEERL SQLGELEAE
Sbjct: 22  AAAEESELKKRNEELEKELRESKEREEQMKRQLQSAWERLRVAEEAEERLCSQLGELEAE 81

Query: 67  ALAQARDYHQQITSLMNQLSQAHKLLQAASTSHSI 102
           A+ QARDYH +I SLM+QLS+A  LL   +T+ SI
Sbjct: 82  AVYQARDYHARIVSLMDQLSRAQGLLLNKNTASSI 116

The following BLAST results are available for this feature:

BLAST of Cla000310 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KN32_CUCSA	5.7e-35	80.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G139070 PE=4 SV=1	[more]
G7J9Q1_MEDTR	5.9e-24	66.67	Response to low sulfur protein, putative OS=Medicago truncatula GN=MTR_3g093400 ...	[more]
A0A151SG23_CAJCA	7.7e-24	64.21	Uncharacterized protein OS=Cajanus cajan GN=KK1_024368 PE=4 SV=1	[more]
F6H7A8_VITVI	2.2e-23	71.43	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_16s0098g00600 PE=4 SV=...	[more]
B9I2B4_POPTR	3.8e-23	64.13	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s00390g PE=4 SV=1	[more]

BLAST of Cla000310 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G49570.1	2.0e-15	50.00	response to low sulfur 3	[more]
AT5G24660.1	3.4e-15	55.41	response to low sulfur 2	[more]
AT5G24655.1	4.9e-14	54.05	response to low sulfur 4	[more]
AT3G49580.1	4.2e-13	45.35	response to low sulfur 1	[more]

BLAST of Cla000310 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659074540\|ref\|XP_008437659.1\|	4.3e-36	83.81	PREDICTED: uncharacterized protein LOC103482998 [Cucumis melo]	[more]
gi\|778698698\|ref\|XP_011654590.1\|	8.1e-35	80.00	PREDICTED: uncharacterized protein LOC105435419 [Cucumis sativus]	[more]
gi\|1009123610\|ref\|XP_015878630.1\|	3.8e-24	64.58	PREDICTED: uncharacterized protein LOC107414934 [Ziziphus jujuba]	[more]
gi\|357464321\|ref\|XP_003602442.1\|	8.4e-24	66.67	response to low sulfur protein, putative [Medicago truncatula]	[more]
gi\|1012342601\|gb\|KYP53794.1\|	1.1e-23	64.21	hypothetical protein KK1_024368 [Cajanus cajan]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0033554	cellular response to stress
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
WMU33003	watermelon EST collection version 2.0	transcribed_cluster
WMU59331	watermelon EST collection version 2.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla000310	Cla000310.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
WMU33003	WMU33003	transcribed_cluster
WMU59331	WMU59331	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 46..66 score: -coord: 4..38 scor
None	No IPR available	PANTHER	PTHR34283	FAMILY NOT NAMED	coord: 10..98 score: 5.1
None	No IPR available	PANTHER	PTHR34283:SF1	SUBFAMILY NOT NAMED	coord: 10..98 score: 5.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla000310	Cla97C01G000020	Watermelon (97103) v2	wmwmbB000
Cla000310	Csa5G139070	Cucumber (Chinese Long) v2	cuwmB360
Cla000310	MELO3C005916	Melon (DHL92) v3.5.1	mewmB002
Cla000310	ClCG01G000030	Watermelon (Charleston Gray)	wcgwmB115
Cla000310	CSPI05G02830	Wild cucumber (PI 183967)	cpiwmB366
Cla000310	Cucsa.202460	Cucumber (Gy14) v1	cgywmB396
Cla000310	LsiUNG001510	Bottle gourd (USVL1VR-Ls)	lsiwmB000
Cla000310	CsGy5G000110	Cucumber (Gy14) v2	cgybwmB336
Cla000310	Bhi12G000609	Wax gourd	wgowmB056

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla000310	Melon (DHL92) v3.6.1	medwmB000
Cla000310	Cucumber (Chinese Long) v3	cucwmB384
Cla000310	Watermelon (97103) v1	wmwmB002
Cla000310	Cucurbita moschata (Rifu)	cmowmB242
Cla000310	Cucurbita pepo (Zucchini)	cpewmB164