ClCG01G000030 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG01G000030
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	response to low sulfur 3 LENGTH=97
Location	CG_Chr01 : 29312 .. 29629 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAGTCCTGAAATCAGCTGGGGTTGACTCAATGAGCCTGAGGAGGAGGAATGAAGAGCTGGAGAGGGAACTGGAGGCGAGCCAGGAAAGAGAGCAGGTTATGAGGGAGCAGCTGAAAAGGGCTTGGGAAAGGCTTAAGGTGGCAGAGGAGGCGGAGGAGAGGCTTTCGTCGCAGCTCGGGGAGCTTGAGGCAGAGGCTCTAGCCCAGGCTCGTGATTACCACCAACAAATCACATCGTTGATGAACCAGCTTTCCCAGGCTCATAAACTGCTGCAAGCTGCCTCCACCTCCCATTCCATCACCTCCTTTACATAG

mRNA sequence

ATGGGAGTCCTGAAATCAGCTGGGGTTGACTCAATGAGCCTGAGGAGGAGGAATGAAGAGCTGGAGAGGGAACTGGAGGCGAGCCAGGAAAGAGAGCAGGTTATGAGGGAGCAGCTGAAAAGGGCTTGGGAAAGGCTTAAGGTGGCAGAGGAGGCGGAGGAGAGGCTTTCGTCGCAGCTCGGGGAGCTTGAGGCAGAGGCTCTAGCCCAGGCTCGTGATTACCACCAACAAATCACATCGTTGATGAACCAGCTTTCCCAGGCTCATAAACTGCTGCAAGCTGCCTCCACCTCCCATTCCATCACCTCCTTTACATAG

Coding sequence (CDS)

ATGGGAGTCCTGAAATCAGCTGGGGTTGACTCAATGAGCCTGAGGAGGAGGAATGAAGAGCTGGAGAGGGAACTGGAGGCGAGCCAGGAAAGAGAGCAGGTTATGAGGGAGCAGCTGAAAAGGGCTTGGGAAAGGCTTAAGGTGGCAGAGGAGGCGGAGGAGAGGCTTTCGTCGCAGCTCGGGGAGCTTGAGGCAGAGGCTCTAGCCCAGGCTCGTGATTACCACCAACAAATCACATCGTTGATGAACCAGCTTTCCCAGGCTCATAAACTGCTGCAAGCTGCCTCCACCTCCCATTCCATCACCTCCTTTACATAG

Protein sequence

MGVLKSAGVDSMSLRRRNEELERELEASQEREQVMREQLKRAWERLKVAEEAEERLSSQLGELEAEALAQARDYHQQITSLMNQLSQAHKLLQAASTSHSITSFT

Homology

[Close]

BLAST of ClCG01G000030 vs. TrEMBL
Match: A0A0A0KN32_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G139070 PE=4 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 1.3e-34
Identity = 83/105 (79.05%), Postives = 91/105 (86.67%), Query Frame = 1


Query: 1   MGVLKSAGVDSMSLRRRNEELERELEASQEREQVMREQLKRAWERLKVAEEAEERLSSQL 60
           MGVLK  GV+S+SL+RRNEELE+ELEAS ERE +MR++L+R  ERLKVAEEAEERLS QL
Sbjct: 1   MGVLKPGGVESVSLKRRNEELEKELEASHERELIMRKELRRVCERLKVAEEAEERLSLQL 60

Query: 61  GELEAEALAQARDYHQQITSLMNQLSQAHKLLQAASTSHSITSFT 106
           GELEAEAL QARDYHQQITSLMNQLS AHKLLQAA    SI SFT
Sbjct: 61  GELEAEALTQARDYHQQITSLMNQLSHAHKLLQAA----SIASFT 101

[Close]

BLAST of ClCG01G000030 vs. TrEMBL
Match: G7J9Q1_MEDTR (Response to low sulfur protein, putative OS=Medicago truncatula GN=MTR_3g093400 PE=2 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 1.3e-23
Identity = 59/90 (65.56%), Postives = 74/90 (82.22%), Query Frame = 1


Query: 9   VDSMSLRRRNEELERELEASQEREQVMREQLKRAWERLKVAEEAEERLSSQLGELEAEAL 68
           V    L+RRN++LE+EL+ S+ERE+ MR QL+ AWERL+VAEEAEERL SQLGELEAEA+
Sbjct: 26  VPESELKRRNDQLEKELKESKEREEQMRRQLQSAWERLRVAEEAEERLCSQLGELEAEAV 85

Query: 69  AQARDYHQQITSLMNQLSQAHKLLQAASTS 99
            QARDYH +I SLM+QLS+A  LL  AS++
Sbjct: 86  YQARDYHDRIVSLMDQLSRAQSLLHIASSN 115

[Close]

BLAST of ClCG01G000030 vs. TrEMBL
Match: A0A151SG23_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_024368 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 1.7e-23
Identity = 60/95 (63.16%), Postives = 75/95 (78.95%), Query Frame = 1


Query: 7   AGVDSMSLRRRNEELERELEASQEREQVMREQLKRAWERLKVAEEAEERLSSQLGELEAE 66
           A  +   L++RNEELE+EL  S+ERE+ M+ QL+ AWERL+VAEEAEERL SQLGELEAE
Sbjct: 22  AAAEESELKKRNEELEKELRESKEREEQMKRQLQSAWERLRVAEEAEERLCSQLGELEAE 81

Query: 67  ALAQARDYHQQITSLMNQLSQAHKLLQAASTSHSI 102
           A+ QARDYH +I SLM+QLS+A  LL   +T+ SI
Sbjct: 82  AVYQARDYHARIVSLMDQLSRAQGLLLNKNTASSI 116

[Close]

BLAST of ClCG01G000030 vs. TrEMBL
Match: F6H7A8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_16s0098g00600 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 2.9e-23
Identity = 60/84 (71.43%), Postives = 71/84 (84.52%), Query Frame = 1


Query: 14  LRRRNEELERELEASQEREQVMREQLKRAWERLKVAEEAEERLSSQLGELEAEALAQARD 73
           LRRRNEELE EL+ SQ+RE+ MR +L+RA ERL+VAEEAEERL SQLGELEAEA+ QAR 
Sbjct: 50  LRRRNEELEEELKKSQDREERMRRELERARERLRVAEEAEERLCSQLGELEAEAVDQARQ 109

Query: 74  YHQQITSLMNQLSQAHKLLQAAST 98
           Y+ +I SLMNQLSQAH+L+Q   T
Sbjct: 110 YNNRIVSLMNQLSQAHRLIQPGPT 133

[Close]

BLAST of ClCG01G000030 vs. TrEMBL
Match: B9I2B4_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s00390g PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 8.5e-23
Identity = 58/92 (63.04%), Postives = 75/92 (81.52%), Query Frame = 1


Query: 1  MGVLKSAGVDSMSLRRRNEELERELEASQEREQVMREQLKRAWERLKVAEEAEERLSSQL 60
          MG +K    + M L++RNEELE+ L+ S++RE+ M+ +L+RAWERL+VAEEAEERL SQL
Sbjct: 4  MGTVKDG--EEMMLKKRNEELEKALKESKQREEKMKSELQRAWERLQVAEEAEERLCSQL 63

Query: 61 GELEAEALAQARDYHQQITSLMNQLSQAHKLL 93
          GELEAEA++ ARD H +I SLMN+LSQAH LL
Sbjct: 64 GELEAEAVSHARDCHARILSLMNELSQAHNLL 93

[Close]

BLAST of ClCG01G000030 vs. TAIR10
Match: AT3G49570.1 (AT3G49570.1 response to low sulfur 3)

HSP 1 Score: 80.1 bits (196), Expect = 9.0e-16
Identity = 44/86 (51.16%), Postives = 55/86 (63.95%), Query Frame = 1


Query: 2  GVLKSAGVDSMSLRRRNEELERELEASQEREQVMREQLKRAWERLKVAEEAEERLSSQLG 61
          G +  A  +   LRRRN ELERE+E        M++++ + W R  VAEEAEERL SQL 
Sbjct: 6  GYVTVAAEEVEELRRRNGELEREMEE-------MKKEMVQLWRRTVVAEEAEERLCSQLA 65

Query: 62 ELEAEALAQARDYHQQITSLMNQLSQ 88
          ELE E+L QARDYH +I  LM+Q+S+
Sbjct: 66 ELEVESLDQARDYHSRIVFLMDQISR 84

[Close]

BLAST of ClCG01G000030 vs. TAIR10
Match: AT5G24660.1 (AT5G24660.1 response to low sulfur 2)

HSP 1 Score: 77.0 bits (188), Expect = 7.6e-15
Identity = 40/74 (54.05%), Postives = 52/74 (70.27%), Query Frame = 1


Query: 14 LRRRNEELERELEASQEREQVMREQLKRAWERLKVAEEAEERLSSQLGELEAEALAQARD 73
          LRR+N E+E+ +E        M++++ + W R +VAEEAEERL SQL ELEAE+L QARD
Sbjct: 18 LRRKNGEMEKAVEE-------MKKEMLQLWRRTQVAEEAEERLCSQLAELEAESLDQARD 77

Query: 74 YHQQITSLMNQLSQ 88
          YH +I  LMN+LS+
Sbjct: 78 YHSRIIFLMNELSR 84

[Close]

BLAST of ClCG01G000030 vs. TAIR10
Match: AT5G24655.1 (AT5G24655.1 response to low sulfur 4)

HSP 1 Score: 73.2 bits (178), Expect = 1.1e-13
Identity = 39/74 (52.70%), Postives = 50/74 (67.57%), Query Frame = 1


Query: 14 LRRRNEELERELEASQEREQVMREQLKRAWERLKVAEEAEERLSSQLGELEAEALAQARD 73
          LR++N E+E+ +E        MR+++ + W R +VAEEAEE L SQL ELEAE+L QARD
Sbjct: 18 LRQKNGEMEKAVEE-------MRKEMLQLWRRTQVAEEAEEHLCSQLAELEAESLDQARD 77

Query: 74 YHQQITSLMNQLSQ 88
          YH +I  L NQLS+
Sbjct: 78 YHTRIIFLTNQLSR 84

[Close]

BLAST of ClCG01G000030 vs. TAIR10
Match: AT3G49580.1 (AT3G49580.1 response to low sulfur 1)

HSP 1 Score: 72.4 bits (176), Expect = 1.9e-13
Identity = 40/86 (46.51%), Postives = 53/86 (61.63%), Query Frame = 1


Query: 2  GVLKSAGVDSMSLRRRNEELERELEASQEREQVMREQLKRAWERLKVAEEAEERLSSQLG 61
          G +  A  +   LRRRN EL RE+         M+ ++ + W+R  VAEEAEE+L SQL 
Sbjct: 6  GCVTVAAEEMDELRRRNIELSREVAE-------MKTEMIKLWQRTVVAEEAEEQLCSQLA 65

Query: 62 ELEAEALAQARDYHQQITSLMNQLSQ 88
          ELE E+L QARDYH ++  LM+Q+S+
Sbjct: 66 ELEVESLEQARDYHDRMLFLMDQISR 84

[Close]

BLAST of ClCG01G000030 vs. NCBI nr
Match: gi|659074540|ref|XP_008437659.1| (PREDICTED: uncharacterized protein LOC103482998 [Cucumis melo])

HSP 1 Score: 157.9 bits (398), Expect = 9.6e-36
Identity = 87/105 (82.86%), Postives = 92/105 (87.62%), Query Frame = 1


Query: 1   MGVLKSAGVDSMSLRRRNEELERELEASQEREQVMREQLKRAWERLKVAEEAEERLSSQL 60
           MGVLKS GV+S+SL RRNEELE+ELEASQERE VMRE+L+R  ERLKVAEEAEERLS QL
Sbjct: 1   MGVLKSGGVESVSLGRRNEELEKELEASQERELVMREELRRVCERLKVAEEAEERLSLQL 60

Query: 61  GELEAEALAQARDYHQQITSLMNQLSQAHKLLQAASTSHSITSFT 106
           GELEAEAL QARDYHQQITSLMNQLS AHKLLQAA    SI SFT
Sbjct: 61  GELEAEALTQARDYHQQITSLMNQLSHAHKLLQAA----SIASFT 101

[Close]

BLAST of ClCG01G000030 vs. NCBI nr
Match: gi|778698698|ref|XP_011654590.1| (PREDICTED: uncharacterized protein LOC105435419 [Cucumis sativus])

HSP 1 Score: 153.7 bits (387), Expect = 1.8e-34
Identity = 83/105 (79.05%), Postives = 91/105 (86.67%), Query Frame = 1


Query: 1   MGVLKSAGVDSMSLRRRNEELERELEASQEREQVMREQLKRAWERLKVAEEAEERLSSQL 60
           MGVLK  GV+S+SL+RRNEELE+ELEAS ERE +MR++L+R  ERLKVAEEAEERLS QL
Sbjct: 1   MGVLKPGGVESVSLKRRNEELEKELEASHERELIMRKELRRVCERLKVAEEAEERLSLQL 60

Query: 61  GELEAEALAQARDYHQQITSLMNQLSQAHKLLQAASTSHSITSFT 106
           GELEAEAL QARDYHQQITSLMNQLS AHKLLQAA    SI SFT
Sbjct: 61  GELEAEALTQARDYHQQITSLMNQLSHAHKLLQAA----SIASFT 101

[Close]

BLAST of ClCG01G000030 vs. NCBI nr
Match: gi|1009123610|ref|XP_015878630.1| (PREDICTED: uncharacterized protein LOC107414934 [Ziziphus jujuba])

HSP 1 Score: 119.0 bits (297), Expect = 4.9e-24
Identity = 62/96 (64.58%), Postives = 78/96 (81.25%), Query Frame = 1


Query: 1  MGVLKSAGVDSMSLRRRNEELERELEASQEREQVMREQLKRAWERLKVAEEAEERLSSQL 60
          MGV+K   VD   LR+RNEELE EL+ S ERE+ MR +L++AW RL++AEEAEERL SQL
Sbjct: 1  MGVIKQ-NVDGEELRKRNEELESELKKSLEREEKMRAELQKAWHRLRIAEEAEERLCSQL 60

Query: 61 GELEAEALAQARDYHQQITSLMNQLSQAHKLLQAAS 97
          GELEAE++ QAR YH +I +LM+QLSQA +LLQA+S
Sbjct: 61 GELEAESVDQARSYHGRIVTLMDQLSQAQQLLQASS 95

[Close]

BLAST of ClCG01G000030 vs. NCBI nr
Match: gi|848853694|ref|XP_012844736.1| (PREDICTED: putative golgin subfamily A member 6-like protein 3 [Erythranthe guttata])

HSP 1 Score: 117.9 bits (294), Expect = 1.1e-23
Identity = 62/95 (65.26%), Postives = 75/95 (78.95%), Query Frame = 1


Query: 8   GVDSMSLRRRNEELERELEASQEREQVMREQLKRAWERLKVAEEAEERLSSQLGELEAEA 67
           G D  +LRRRNEELEREL+ S ERE+ M+E+L R WERL VAEEAEERL  QLGELEAEA
Sbjct: 20  GGDEAALRRRNEELERELKKSLEREERMKEELMRVWERLSVAEEAEERLCCQLGELEAEA 79

Query: 68  LAQARDYHQQITSLMNQLSQAHKLLQAASTSHSIT 103
           ++QAR+Y  +I  LM QLS A KLL++A++S S T
Sbjct: 80  VSQAREYRARIMELMEQLSGAEKLLRSATSSFSST 114

[Close]

BLAST of ClCG01G000030 vs. NCBI nr
Match: gi|357464321|ref|XP_003602442.1| (response to low sulfur protein, putative [Medicago truncatula])

HSP 1 Score: 117.1 bits (292), Expect = 1.9e-23
Identity = 59/90 (65.56%), Postives = 74/90 (82.22%), Query Frame = 1


Query: 9   VDSMSLRRRNEELERELEASQEREQVMREQLKRAWERLKVAEEAEERLSSQLGELEAEAL 68
           V    L+RRN++LE+EL+ S+ERE+ MR QL+ AWERL+VAEEAEERL SQLGELEAEA+
Sbjct: 26  VPESELKRRNDQLEKELKESKEREEQMRRQLQSAWERLRVAEEAEERLCSQLGELEAEAV 85

Query: 69  AQARDYHQQITSLMNQLSQAHKLLQAASTS 99
            QARDYH +I SLM+QLS+A  LL  AS++
Sbjct: 86  YQARDYHDRIVSLMDQLSRAQSLLHIASSN 115

The following BLAST results are available for this feature:

BLAST of ClCG01G000030 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KN32_CUCSA	1.3e-34	79.05	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G139070 PE=4 SV=1	[more]
G7J9Q1_MEDTR	1.3e-23	65.56	Response to low sulfur protein, putative OS=Medicago truncatula GN=MTR_3g093400 ...	[more]
A0A151SG23_CAJCA	1.7e-23	63.16	Uncharacterized protein OS=Cajanus cajan GN=KK1_024368 PE=4 SV=1	[more]
F6H7A8_VITVI	2.9e-23	71.43	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_16s0098g00600 PE=4 SV=...	[more]
B9I2B4_POPTR	8.5e-23	63.04	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s00390g PE=4 SV=1	[more]

BLAST of ClCG01G000030 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G49570.1	9.0e-16	51.16	response to low sulfur 3	[more]
AT5G24660.1	7.6e-15	54.05	response to low sulfur 2	[more]
AT5G24655.1	1.1e-13	52.70	response to low sulfur 4	[more]
AT3G49580.1	1.9e-13	46.51	response to low sulfur 1	[more]

BLAST of ClCG01G000030 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659074540\|ref\|XP_008437659.1\|	9.6e-36	82.86	PREDICTED: uncharacterized protein LOC103482998 [Cucumis melo]	[more]
gi\|778698698\|ref\|XP_011654590.1\|	1.8e-34	79.05	PREDICTED: uncharacterized protein LOC105435419 [Cucumis sativus]	[more]
gi\|1009123610\|ref\|XP_015878630.1\|	4.9e-24	64.58	PREDICTED: uncharacterized protein LOC107414934 [Ziziphus jujuba]	[more]
gi\|848853694\|ref\|XP_012844736.1\|	1.1e-23	65.26	PREDICTED: putative golgin subfamily A member 6-like protein 3 [Erythranthe gutt...	[more]
gi\|357464321\|ref\|XP_003602442.1\|	1.9e-23	65.56	response to low sulfur protein, putative [Medicago truncatula]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0006508	proteolysis
biological_process	GO:0033554	cellular response to stress
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016020	membrane
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0004222	metalloendopeptidase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG01G000030.1	ClCG01G000030.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 46..66 score: -coord: 4..38 scor
None	No IPR available	PANTHER	PTHR34283	FAMILY NOT NAMED	coord: 10..98 score: 1.7
None	No IPR available	PANTHER	PTHR34283:SF1	SUBFAMILY NOT NAMED	coord: 10..98 score: 1.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG01G000030	Csa5G139070	Cucumber (Chinese Long) v2	cuwcgB374
ClCG01G000030	MELO3C005916	Melon (DHL92) v3.5.1	mewcgB014
ClCG01G000030	Cla000310	Watermelon (97103) v1	wcgwmB115
ClCG01G000030	Cla97C01G000020	Watermelon (97103) v2	wcgwmbB089
ClCG01G000030	Bhi12G000609	Wax gourd	wcgwgoB199
ClCG01G000030	CSPI05G02830	Wild cucumber (PI 183967)	cpiwcgB391
ClCG01G000030	Cucsa.202460	Cucumber (Gy14) v1	cgywcgB373
ClCG01G000030	CmoCh02G011860	Cucurbita moschata (Rifu)	cmowcgB520
ClCG01G000030	LsiUNG001510	Bottle gourd (USVL1VR-Ls)	lsiwcgB002
ClCG01G000030	CsGy5G000110	Cucumber (Gy14) v2	cgybwcgB343
ClCG01G000030	Carg13986	Silver-seed gourd	carwcgB0492

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG01G000030	Cucurbita pepo (Zucchini)	cpewcgB167
ClCG01G000030	Melon (DHL92) v3.6.1	medwcgB013
ClCG01G000030	Cucumber (Chinese Long) v3	cucwcgB398
ClCG01G000030	Cucurbita maxima (Rimu)	cmawcgB255
ClCG01G000030	Cucurbita moschata (Rifu)	cmowcgB243