Lsi11G015790 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi11G015790
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Zinc finger CCCH domain protein
Location	chr11 : 24119951 .. 24122364 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACCGAAGATAAAGGTGAATCAAACGTATTGTTAAGGAAAGTTACAGGAGTCAAGGAGGGGGAAGAATCAATTGACAAAACCTTTTGTGTTATTGCATATAACGAAGAGGATGAAAACATGTTCGTAGGGAAAAGTTGTGTGACTATTTTCAACCCATTACTTCCACCACATGAATCAAAGGTTTTAAGGTTCCCACATAAATTCACCAACGTTACAGAGGAGGAAGAACAGAATGAAGAAACATGTGTTGTTGCGTGCAAAGACAAAGAAGTCAAGAAAGAAGATGTGATAATAAACGGAGGTAATTTTGACAAAGAAGACGACAACCATGGGCAAATCGATTTGAAGAAGTTTGAATCTTTGGTTGCAGCCGATTACTTGGAAGACAACGAGGAAGAATACATGGAAACACATGATCCATTCAAACCGACCCAAACGATCCGACCCAACATGTGTGTTCAATTCCTAGCATGTGTTTCGTGCAATCCGACCTGGGTTCAGTCATTCCTAGTTTCAATTTGCTGCCTCCCTCTCCATGAGTTTATTTCAACCCATTTTTTCACAAATTCTGGGTTATGCAACAATAAATTTTCATATGGGTTCATGGGTTGCTTTGATACTCCAACTTTGGCTAAAATGATTGAGCAAAATCTTGGTGGGTGGCGTGCATACAATTCTCAACAACCAAAGAAAATTTTTTATGACAGCCATGCTCTACAGTTCTTAGATTTTTTATGGGCACCTTCAATTTTTGTAGTTCCAGTTGCAATGCAAGATTTCCACAAGCCAACGATTTTATTTGGGATTTTTACAAATCATTGAAGTAAAAAAAACTTTGTATTCTTCATTTTCCTTTTGAAACTCGAAGATGAGTTTTTTTTTTTTTTAGGGATAGAATGATGTAGTAGGATTAGGGTAAATTAGGGTATCTTGTTCAAATCCTTAATTGATTTGGTTTAGGATTAGTTTCATTGATTGGTTAGGATTAGGATTAGTTTCCTTGGTTTATTAAGATTAGGATTAGTTTCTTTGTTAATTAGGATTAGAATTAGTTTGCTTTCCAATTCTCTATAAATAGAGGGATTGTGTTCTTGTTTTGATAACTTTTAATTTATAATAAAGACTTCGATTTTATTATTGGAATAGGCTAAAGATCTTTAAGAGGAGTGATTGGTGAATGGAATGATCTTTGGGAGTTCAGTACAATGATCTATTATTCTTAGAACCTGTAATTTGGAATTTTCATCGAGATGACTTTGGGGCTCTTTTTTCTTTTTTTTCTTTTTTTTTTGCCCCTTCTTTTGGTGTTGGCATATCATCATCATCCCATATTATGTGTATCATTAGACTGGTATACTGTAATAAATACCACACAGTAGCTTTTGATCTTTGCAACACTTGGAAGTAAGATTGCATAAAAGGCTGAAACAGTACAAATGTGCCTTAACTGACTTGATGTACGCTTGATCAATATCTGGAGAAAAAGCAGCTCCTTCAGACTGCAGAAGAACAGTCGCGTATATTGCGTGAGATTCCACCAGTGATTGCAGATGAAACAGAAATTAAAGGCATTTATGCTGGTGCAAATCAAGGAGATAATGTCACTAATGAAGGAGATGAAACAAAATTGCTGGTGATGAGGGAGGTTTTAGATGATACAAATCAAGGAGAAACTGTATTTAGTTCAAACCCAAATGTCGATATTTATGTTGCAGAAAACCCAACTACAGCTTTGATGTCCAACGTGAAAGAATTTGCAGGTTTGTCTGTCTTTAGGTTAATCTAATCGTATTGTACATACTATTTGTAGTTTCTCTCAAGTCCTTATAAATAGTTAAGTTACTTTGTATCTTTCCCATTGTTTTAAAAAAATGAATTTCAAGACCAAAGTTTTTTTACTGATCAACTCTGGGCTTTTGGGTTACAGAAAATTTCATTAGAGATCCTAAGGCCAAATGGTTCATTAGCAGAACACGAGCTATATGGCATGTGAACTGATTCCTTTCTTTTATGATATTATTGCAGAATTTAGACAGACTGTTCTTGATGAAGAACAGCCCCAACAACCAGGAGAATCTACGTATAATAGCTTTAAAGAGACAGAACCTATAAATGTTATGGATAAAGGCTGTCAAGCGTATGAGCAGATTAAAGAATCTAGAGTGATAAATTTGAGCGATGATGATGAACCACCAGGGGTTGAAGAGCATGATTGGAATAACAAACTAAGAAGCTTGATTTGGCATTATTTAGATCCTCAGGGGGACATTCAAGGGCCCTTTTGTCTTGCGTCATTGAAAAACTGGAAGGATGCTAACTATTTTCCTTCAGATTTCAAGGTCTGGAAGACGGGTCAGAGTCAAGATCAAGCTGTTTTATTGAGCGACATTCTTTCCCCCTTCTTTTCATAA

mRNA sequence

ATGACCGAAGATAAAGGTGAATCAAACGTATTGTTAAGGAAAGTTACAGGAGTCAAGGAGGGGGAAGAATCAATTGACAAAACCTTTTGTGTTATTGCATATAACGAAGAGGATGAAAACATGTTCGTAGGGAAAAGTTGTGTGACTATTTTCAACCCATTACTTCCACCACATGAATCAAAGGTTTTAAGGTTCCCACATAAATTCACCAACGTTACAGAGGAGGAAGAACAGAATGAAGAAACATGTGTTGTTGCGTGCAAAGACAAAGAAGTCAAGAAAGAAGATGTGATAATAAACGGAGGTAATTTTGACAAAGAAGACGACAACCATGGGCAAATCGATTTGAAGAAGTTTGAATCTTTGGTTGCAGCCGATTACTTGGAAGACAACGAGGAAGAATACATGGAAACACATGATCCATTCAAACCGACCCAAACGATCCGACCCAACATGTGTGTTCAATTCCTAGCATGTGTTTCGTGCAATCCGACCTGGCTCCTTCAGACTGCAGAAGAACAGTCGCGTATATTGCGTGAGATTCCACCAGTGATTGCAGATGAAACAGAAATTAAAGGCATTTATGCTGGTGCAAATCAAGGAGATAATGTCACTAATGAAGGAGATGAAACAAAATTGCTGGTGATGAGGGAGGTTTTAGATGATACAAATCAAGGAGAAACTGTATTTAGTTCAAACCCAAATGTCGATATTTATGTTGCAGAAAACCCAACTACAGCTTTGATGTCCAACGTGAAAGAATTTGCAGAATTTAGACAGACTGTTCTTGATGAAGAACAGCCCCAACAACCAGGAGAATCTACGTATAATAGCTTTAAAGAGACAGAACCTATAAATGTTATGGATAAAGGCTGTCAAGCGTATGAGCAGATTAAAGAATCTAGAGTGATAAATTTGAGCGATGATGATGAACCACCAGGGGTTGAAGAGCATGATTGGAATAACAAACTAAGAAGCTTGATTTGGCATTATTTAGATCCTCAGGGGGACATTCAAGGGCCCTTTTGTCTTGCGTCATTGAAAAACTGGAAGGATGCTAACTATTTTCCTTCAGATTTCAAGGTCTGGAAGACGGGTCAGAGTCAAGATCAAGCTGTTTTATTGAGCGACATTCTTTCCCCCTTCTTTTCATAA

Coding sequence (CDS)

ATGACCGAAGATAAAGGTGAATCAAACGTATTGTTAAGGAAAGTTACAGGAGTCAAGGAGGGGGAAGAATCAATTGACAAAACCTTTTGTGTTATTGCATATAACGAAGAGGATGAAAACATGTTCGTAGGGAAAAGTTGTGTGACTATTTTCAACCCATTACTTCCACCACATGAATCAAAGGTTTTAAGGTTCCCACATAAATTCACCAACGTTACAGAGGAGGAAGAACAGAATGAAGAAACATGTGTTGTTGCGTGCAAAGACAAAGAAGTCAAGAAAGAAGATGTGATAATAAACGGAGGTAATTTTGACAAAGAAGACGACAACCATGGGCAAATCGATTTGAAGAAGTTTGAATCTTTGGTTGCAGCCGATTACTTGGAAGACAACGAGGAAGAATACATGGAAACACATGATCCATTCAAACCGACCCAAACGATCCGACCCAACATGTGTGTTCAATTCCTAGCATGTGTTTCGTGCAATCCGACCTGGCTCCTTCAGACTGCAGAAGAACAGTCGCGTATATTGCGTGAGATTCCACCAGTGATTGCAGATGAAACAGAAATTAAAGGCATTTATGCTGGTGCAAATCAAGGAGATAATGTCACTAATGAAGGAGATGAAACAAAATTGCTGGTGATGAGGGAGGTTTTAGATGATACAAATCAAGGAGAAACTGTATTTAGTTCAAACCCAAATGTCGATATTTATGTTGCAGAAAACCCAACTACAGCTTTGATGTCCAACGTGAAAGAATTTGCAGAATTTAGACAGACTGTTCTTGATGAAGAACAGCCCCAACAACCAGGAGAATCTACGTATAATAGCTTTAAAGAGACAGAACCTATAAATGTTATGGATAAAGGCTGTCAAGCGTATGAGCAGATTAAAGAATCTAGAGTGATAAATTTGAGCGATGATGATGAACCACCAGGGGTTGAAGAGCATGATTGGAATAACAAACTAAGAAGCTTGATTTGGCATTATTTAGATCCTCAGGGGGACATTCAAGGGCCCTTTTGTCTTGCGTCATTGAAAAACTGGAAGGATGCTAACTATTTTCCTTCAGATTTCAAGGTCTGGAAGACGGGTCAGAGTCAAGATCAAGCTGTTTTATTGAGCGACATTCTTTCCCCCTTCTTTTCATAA

Protein sequence

MTEDKGESNVLLRKVTGVKEGEESIDKTFCVIAYNEEDENMFVGKSCVTIFNPLLPPHESKVLRFPHKFTNVTEEEEQNEETCVVACKDKEVKKEDVIINGGNFDKEDDNHGQIDLKKFESLVAADYLEDNEEEYMETHDPFKPTQTIRPNMCVQFLACVSCNPTWLLQTAEEQSRILREIPPVIADETEIKGIYAGANQGDNVTNEGDETKLLVMREVLDDTNQGETVFSSNPNVDIYVAENPTTALMSNVKEFAEFRQTVLDEEQPQQPGESTYNSFKETEPINVMDKGCQAYEQIKESRVINLSDDDEPPGVEEHDWNNKLRSLIWHYLDPQGDIQGPFCLASLKNWKDANYFPSDFKVWKTGQSQDQAVLLSDILSPFFS

Homology

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BLAST of Lsi11G015790 vs. Swiss-Prot
Match: Y5843_ARATH (Uncharacterized protein At5g08430 OS=Arabidopsis thaliana GN=At5g08430 PE=1 SV=2)

HSP 1 Score: 101.7 bits (252), Expect = 1.9e-20
Identity = 84/247 (34.01%), Postives = 113/247 (45.75%), Query Frame = 1


Query: 167 LLQTAEEQSRILREIPPVIADETEIKGIYAG--ANQGDNVTNEGDETKLLVMREVLDDTN 226
           LLQ  +EQ+R+LRE+P VI +E       +   A++ DN      E+ L  + E  +  N
Sbjct: 311 LLQNPDEQARLLREVPEVIGEELVQNPEVSSPEAHKSDN-EQRLSESPLSCIHETPEARN 370

Query: 227 Q--GETVFSSNPNVDIYVAENPTTA--LMSNVKEFAEFRQTVL----------DEEQPQQ 286
              GE    +N     YV  NP T   + S   E  +   T +          D EQP  
Sbjct: 371 LFGGEDQQFNNG----YVMSNPITTPGITSCATEINKGLPTWIASAGAEYLHVDVEQPAN 430

Query: 287 --------PGESTYNSFKETEPINVMDKGCQAYEQIKESRVINLSDDDEPPGVEEHDWNN 346
                     ES  +  + + P+N +D G Q   Q   S VI LSDDDE    +    + 
Sbjct: 431 GIIGGETPTEESKVSQLQSSIPVNNVDNGSQV--QPNPSEVIELSDDDEDDNGDGETLDP 490

Query: 347 KLRS----------LIWHYLDPQGDIQGPFCLASLKNWKDANYFPSDFKVWKTGQSQDQA 380
           K+            L W Y DPQG +QGPF L  LK W DA YF   F+VW TG+S + A
Sbjct: 491 KVEDVRVLSYDKEKLNWLYKDPQGLVQGPFSLTQLKAWSDAEYFTKQFRVWMTGESMESA 550

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BLAST of Lsi11G015790 vs. Swiss-Prot
Match: C3H19_ARATH (Zinc finger CCCH domain-containing protein 19 OS=Arabidopsis thaliana GN=NERD PE=1 SV=3)

HSP 1 Score: 71.2 bits (173), Expect = 2.7e-11
Identity = 26/56 (46.43%), Postives = 37/56 (66.07%), Query Frame = 1


Query: 328  IWHYLDPQGDIQGPFCLASLKNWKDANYFPSDFKVWKTGQSQDQAVLLSDILSPFF 384
            IWHY DP G +QGPF +A L+ W +  YFP+  ++WK  +S   +VLL+D L+  F
Sbjct: 1309 IWHYKDPSGKVQGPFSMAQLRKWNNTGYFPAKLEIWKANESPLDSVLLTDALAGLF 1364

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BLAST of Lsi11G015790 vs. Swiss-Prot
Match: C3H44_ARATH (Zinc finger CCCH domain-containing protein 44 OS=Arabidopsis thaliana GN=At3g51120 PE=2 SV=3)

HSP 1 Score: 69.7 bits (169), Expect = 7.9e-11
Identity = 31/83 (37.35%), Postives = 48/83 (57.83%), Query Frame = 1


Query: 301 SRVINLSDDDEPPGVEEHDWNNKLRSLIWHYLDPQGDIQGPFCLASLKNWKDANYFPSDF 360
           S+V N S + +  G       +   S IWHY DP G  QGPF +  L+ WK + +FP   
Sbjct: 697 SKVHNNSSNIQETG------KDDEESEIWHYRDPTGKTQGPFSMVQLRRWKSSGHFPPYL 756

Query: 361 KVWKTGQSQDQAVLLSDILSPFF 384
           ++W+  ++QD++VLL+D L+  F
Sbjct: 757 RIWRAHENQDESVLLTDALAGRF 773

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BLAST of Lsi11G015790 vs. TrEMBL
Match: A0A0A0K932_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G252680 PE=4 SV=1)

HSP 1 Score: 340.5 bits (872), Expect = 2.7e-90
Identity = 170/218 (77.98%), Postives = 184/218 (84.40%), Query Frame = 1


Query: 167 LLQTAEEQSRILREIPPVIADETEIKGIYAGANQGDNVTNEGDETKLLVMREVLDDTNQG 226
           LLQ+A EQSRILREIP VIADETE  GI+A A+Q DNVT EGDETKLL +RE  DD  QG
Sbjct: 33  LLQSAAEQSRILREIPQVIADETEFGGIHASADQADNVTKEGDETKLLDIREASDDRKQG 92

Query: 227 ETVFSSNPNVDIYVAENPTTALMSNVKEFAEFRQTVLDEEQPQQPGESTYNSFKETEPIN 286
           ETVFSSN NVD Y AENPTTALM N+ E  E RQ  LDE Q  QP E TYN F E+EPIN
Sbjct: 93  ETVFSSNSNVDTYGAENPTTALMFNLNENTESRQIFLDE-QAAQPVECTYNYFIESEPIN 152

Query: 287 VMDKGCQAYEQIKESRVINLSDDDEPPGVEEHDWNNKLRSLIWHYLDPQGDIQGPFCLAS 346
            +DKGCQA EQIKES VI+LSDDDEPP  EEHDWNNKL+SLIW+YLDPQGD+QGPFCLAS
Sbjct: 153 AVDKGCQANEQIKESTVIDLSDDDEPPRAEEHDWNNKLKSLIWYYLDPQGDVQGPFCLAS 212

Query: 347 LKNWKDANYFPSDFKVWKTGQSQDQAVLLSDILSPFFS 385
           LKNWKDANYFPSDFKVW+TGQ+QDQAVLL+DILSPFFS
Sbjct: 213 LKNWKDANYFPSDFKVWRTGQTQDQAVLLNDILSPFFS 249

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BLAST of Lsi11G015790 vs. TrEMBL
Match: A0A0B0NDW2_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_12743 PE=4 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 9.0e-30
Identity = 88/233 (37.77%), Postives = 129/233 (55.36%), Query Frame = 1


Query: 167 LLQTAEEQSRILREIPPVIADETEIKGIYAGANQGDNVTNEGDETKLLVMREVLDDTNQG 226
           LLQT EEQSR+L E+P VIA+E E + +        +V +E D +++  +RE L+     
Sbjct: 299 LLQTPEEQSRLLCEVPNVIAEEVEPETVL------QDVKHEKDSSQISTVRETLE----- 358

Query: 227 ETVFSSNPNVDIYVAENPTTALMSNVKEFAEFRQTVLDEEQ------PQQPGESTYNSFK 286
                SNP      A N   + +  +K  A+    +L +++       +Q      N+ +
Sbjct: 359 ---IPSNP------ASNGKLSTLLPLKPVAQSSPIILKDDRVHCHDVQEQLIRPRDNNVE 418

Query: 287 ETEPINVMDKGCQAYEQ-----IKESRVINLSDDDEPPGVEEHDWN-----NKLRSLIWH 346
            T+ +NV ++     +      +  ++VI+LSDDD     +  D N     + +RSLIWH
Sbjct: 419 STQVVNVPEENGAIVKHDFLKVLDTTQVIDLSDDDNDDNEKHEDSNKTEAQDDVRSLIWH 478

Query: 347 YLDPQGDIQGPFCLASLKNWKDANYFPSDFKVWKTGQSQDQAVLLSDILSPFF 384
           Y DPQGDIQGPF L SLKNW D +YFP DFKVWKTGQ+++ AVLL+DI+   F
Sbjct: 479 YQDPQGDIQGPFSLLSLKNWMDLDYFPDDFKVWKTGQNRNNAVLLADIVRRMF 511

[Close]

BLAST of Lsi11G015790 vs. TrEMBL
Match: A0A0D2RN86_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G172400 PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 2.2e-28
Identity = 88/233 (37.77%), Postives = 125/233 (53.65%), Query Frame = 1


Query: 167 LLQTAEEQSRILREIPPVIADETEIKGIYAGANQGDNVTNEGDETKLLVMREVLDDTNQG 226
           LLQT EEQSR+L E+P VIA+E E + +        +V +E D +++  +RE L+     
Sbjct: 327 LLQTPEEQSRLLCEVPNVIAEEVEPETV------PQDVKHEKDSSQISTVRETLE----- 386

Query: 227 ETVFSSNPNVDIYVAENPTTALMSNVKEFAEFRQTVLDEEQ------PQQPGESTYNSFK 286
                SNP        N   + +  +K  A+    +L ++        +Q      N+ +
Sbjct: 387 ---IPSNP------VSNGKLSTLLPLKPVAQSSPIILKDDTVHCHDVQEQLIRPRDNNVR 446

Query: 287 ETEPINVMDKGCQAYEQ-----IKESRVINLSDDDEPPGVEEHDWN-----NKLRSLIWH 346
            T+  NV ++     +      +  ++VI+LSDDD     E  D N     + +RSLIWH
Sbjct: 447 STQVGNVPEENGAIVKHDFLKALDTTQVIDLSDDDNDDNEEHEDSNKTEAQDDVRSLIWH 506

Query: 347 YLDPQGDIQGPFCLASLKNWKDANYFPSDFKVWKTGQSQDQAVLLSDILSPFF 384
           Y DPQGDIQGPF L SLKNW D +YFP DFKVWKTGQ+ + AVLL+DI+   F
Sbjct: 507 YQDPQGDIQGPFSLLSLKNWMDLDYFPDDFKVWKTGQNLNNAVLLADIVGRMF 539

[Close]

BLAST of Lsi11G015790 vs. TrEMBL
Match: A0A0D2RN81_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G172400 PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 8.4e-28
Identity = 87/227 (38.33%), Postives = 123/227 (54.19%), Query Frame = 1


Query: 167 LLQTAEEQSRILREIPPVIADETEIKGIYAGANQGDNVTNEGDETKLLVMREVLDDTNQG 226
           LLQT EEQSR+L E+P VIA+E E + +        +V +E D +++  +RE L+  +  
Sbjct: 327 LLQTPEEQSRLLCEVPNVIAEEVEPETV------PQDVKHEKDSSQISTVRETLEIPSNP 386

Query: 227 ETVFSSNPNVDIYVAENPTTALMSNVKEFAEFRQTVLDEEQPQQPGESTYNSFKETEPIN 286
                SN  +   +   P     S+     +   TV   +  +Q      N+ + T+  N
Sbjct: 387 V----SNGKLSTLLPLKPGNVAQSSPIILKD--DTVHCHDVQEQLIRPRDNNVRSTQVGN 446

Query: 287 VMDKGCQAYEQ-----IKESRVINLSDDDEPPGVEEHDWN-----NKLRSLIWHYLDPQG 346
           V ++     +      +  ++VI+LSDDD     E  D N     + +RSLIWHY DPQG
Sbjct: 447 VPEENGAIVKHDFLKALDTTQVIDLSDDDNDDNEEHEDSNKTEAQDDVRSLIWHYQDPQG 506

Query: 347 DIQGPFCLASLKNWKDANYFPSDFKVWKTGQSQDQAVLLSDILSPFF 384
           DIQGPF L SLKNW D +YFP DFKVWKTGQ+ + AVLL+DI+   F
Sbjct: 507 DIQGPFSLLSLKNWMDLDYFPDDFKVWKTGQNLNNAVLLADIVGRMF 541

[Close]

BLAST of Lsi11G015790 vs. TrEMBL
Match: A0A0D2PUH6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G172400 PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 2.4e-27
Identity = 89/227 (39.21%), Postives = 123/227 (54.19%), Query Frame = 1


Query: 167 LLQTAEEQSRILREIPPVIADETEIKGIYAGANQGDNVTNEGDETKLLVMREVLDDTNQG 226
           LLQT EEQSR+L E+P VIA+E E + +        +V +E D +++  +RE L+     
Sbjct: 327 LLQTPEEQSRLLCEVPNVIAEEVEPETV------PQDVKHEKDSSQISTVRETLE----- 386

Query: 227 ETVFSSNPNVDIYVAENPTTALMSNVKEFAEFRQTVLDEEQPQQPGESTYNSFKETEPIN 286
                SNP     V+    + L+          Q     EQ  +P +   N+ + T+  N
Sbjct: 387 ---IPSNP-----VSNGKLSTLLPLKPVHCHDVQ-----EQLIRPRD---NNVRSTQVGN 446

Query: 287 VMDKGCQAYEQ-----IKESRVINLSDDDEPPGVEEHDWN-----NKLRSLIWHYLDPQG 346
           V ++     +      +  ++VI+LSDDD     E  D N     + +RSLIWHY DPQG
Sbjct: 447 VPEENGAIVKHDFLKALDTTQVIDLSDDDNDDNEEHEDSNKTEAQDDVRSLIWHYQDPQG 506

Query: 347 DIQGPFCLASLKNWKDANYFPSDFKVWKTGQSQDQAVLLSDILSPFF 384
           DIQGPF L SLKNW D +YFP DFKVWKTGQ+ + AVLL+DI+   F
Sbjct: 507 DIQGPFSLLSLKNWMDLDYFPDDFKVWKTGQNLNNAVLLADIVGRMF 526

[Close]

BLAST of Lsi11G015790 vs. TAIR10
Match: AT5G08430.1 (AT5G08430.1 SWIB/MDM2 domain;Plus-3;GYF)

HSP 1 Score: 101.7 bits (252), Expect = 1.1e-21
Identity = 84/247 (34.01%), Postives = 113/247 (45.75%), Query Frame = 1


Query: 167 LLQTAEEQSRILREIPPVIADETEIKGIYAG--ANQGDNVTNEGDETKLLVMREVLDDTN 226
           LLQ  +EQ+R+LRE+P VI +E       +   A++ DN      E+ L  + E  +  N
Sbjct: 311 LLQNPDEQARLLREVPEVIGEELVQNPEVSSPEAHKSDN-EQRLSESPLSCIHETPEARN 370

Query: 227 Q--GETVFSSNPNVDIYVAENPTTA--LMSNVKEFAEFRQTVL----------DEEQPQQ 286
              GE    +N     YV  NP T   + S   E  +   T +          D EQP  
Sbjct: 371 LFGGEDQQFNNG----YVMSNPITTPGITSCATEINKGLPTWIASAGAEYLHVDVEQPAN 430

Query: 287 --------PGESTYNSFKETEPINVMDKGCQAYEQIKESRVINLSDDDEPPGVEEHDWNN 346
                     ES  +  + + P+N +D G Q   Q   S VI LSDDDE    +    + 
Sbjct: 431 GIIGGETPTEESKVSQLQSSIPVNNVDNGSQV--QPNPSEVIELSDDDEDDNGDGETLDP 490

Query: 347 KLRS----------LIWHYLDPQGDIQGPFCLASLKNWKDANYFPSDFKVWKTGQSQDQA 380
           K+            L W Y DPQG +QGPF L  LK W DA YF   F+VW TG+S + A
Sbjct: 491 KVEDVRVLSYDKEKLNWLYKDPQGLVQGPFSLTQLKAWSDAEYFTKQFRVWMTGESMESA 550

[Close]

BLAST of Lsi11G015790 vs. TAIR10
Match: AT5G23480.1 (AT5G23480.1 SWIB/MDM2 domain;Plus-3;GYF)

HSP 1 Score: 76.6 bits (187), Expect = 3.6e-14
Identity = 65/240 (27.08%), Postives = 101/240 (42.08%), Query Frame = 1


Query: 167 LLQTAEEQSRILREIPPVIADETEIKGI-----------------YAGANQGDNVTNEGD 226
           LL+  EEQ R+L ++P V+A++ E + +                 +  A+Q D      D
Sbjct: 350 LLKNPEEQLRLLCDVPDVVAEKLEPEFVDDDGKLVNDATVPNPEAFTEAHQSDEEIQPSD 409

Query: 227 ETKLLVMREVLDDTNQGETVFSSNPNVDIYVAENPTTALMSNVKEFAEFRQ-TVLDEEQP 286
                + + + D      +  + + + D+Y  E P   +  N     E    T + + Q 
Sbjct: 410 LPDSSIQKTLEDQPIWTASAGNKDLHEDVY--EPPANGITLNTDSITEGEMNTKVSQHQS 469

Query: 287 QQPGESTYNSFKETEPINVMDKGCQAYEQIKESRVINLSDDDEPPGVEEHDWNNKL---- 346
             P               V+D   +         +I LSDDD+    +E D N++     
Sbjct: 470 STP---------------VIDLSNKTQAHSNPIEIIELSDDDDD---DEKDKNDQAYQSY 529

Query: 347 --RSLIWHYLDPQGDIQGPFCLASLKNWKDANYFPS--DFKVWKTGQSQDQAVLLSDILS 381
             + ++W Y  P+G   GPF L  LK W D  YF    DFKVWKTG+S   AVLL+ +LS
Sbjct: 530 DPKKVMWFYEYPKGKTHGPFSLTDLKTWSDEEYFVGVPDFKVWKTGES---AVLLTKLLS 566

[Close]

BLAST of Lsi11G015790 vs. TAIR10
Match: AT2G16485.1 (AT2G16485.1 nucleic acid binding;zinc ion binding;DNA binding)

HSP 1 Score: 71.2 bits (173), Expect = 1.5e-12
Identity = 26/56 (46.43%), Postives = 37/56 (66.07%), Query Frame = 1


Query: 328  IWHYLDPQGDIQGPFCLASLKNWKDANYFPSDFKVWKTGQSQDQAVLLSDILSPFF 384
            IWHY DP G +QGPF +A L+ W +  YFP+  ++WK  +S   +VLL+D L+  F
Sbjct: 1309 IWHYKDPSGKVQGPFSMAQLRKWNNTGYFPAKLEIWKANESPLDSVLLTDALAGLF 1364

[Close]

BLAST of Lsi11G015790 vs. TAIR10
Match: AT3G51120.1 (AT3G51120.1 DNA binding;zinc ion binding;nucleic acid binding;nucleic acid binding)

HSP 1 Score: 69.7 bits (169), Expect = 4.4e-12
Identity = 31/83 (37.35%), Postives = 48/83 (57.83%), Query Frame = 1


Query: 301 SRVINLSDDDEPPGVEEHDWNNKLRSLIWHYLDPQGDIQGPFCLASLKNWKDANYFPSDF 360
           S+V N S + +  G       +   S IWHY DP G  QGPF +  L+ WK + +FP   
Sbjct: 697 SKVHNNSSNIQETG------KDDEESEIWHYRDPTGKTQGPFSMVQLRRWKSSGHFPPYL 756

Query: 361 KVWKTGQSQDQAVLLSDILSPFF 384
           ++W+  ++QD++VLL+D L+  F
Sbjct: 757 RIWRAHENQDESVLLTDALAGRF 773

[Close]

BLAST of Lsi11G015790 vs. TAIR10
Match: AT2G18090.1 (AT2G18090.1 PHD finger family protein / SWIB complex BAF60b domain-containing protein / GYF domain-containing protein)

HSP 1 Score: 64.7 bits (156), Expect = 1.4e-10
Identity = 22/58 (37.93%), Postives = 38/58 (65.52%), Query Frame = 1


Query: 326 SLIWHYLDPQGDIQGPFCLASLKNWKDANYFPSDFKVWKTGQSQDQAVLLSDILSPFF 384
           +++W Y DP G I GPF L +L+ W  + +FP + ++W+ G+ Q  ++LL+D L+  F
Sbjct: 456 NMVWLYGDPDGKIHGPFSLYNLRQWNSSGHFPPELRIWRLGEQQHSSILLTDALNGQF 513

[Close]

BLAST of Lsi11G015790 vs. NCBI nr
Match: gi|449461126|ref|XP_004148294.1| (PREDICTED: uncharacterized protein At5g08430 isoform X1 [Cucumis sativus])

HSP 1 Score: 340.5 bits (872), Expect = 3.8e-90
Identity = 170/218 (77.98%), Postives = 184/218 (84.40%), Query Frame = 1


Query: 167 LLQTAEEQSRILREIPPVIADETEIKGIYAGANQGDNVTNEGDETKLLVMREVLDDTNQG 226
           LLQ+A EQSRILREIP VIADETE  GI+A A+Q DNVT EGDETKLL +RE  DD  QG
Sbjct: 327 LLQSAAEQSRILREIPQVIADETEFGGIHASADQADNVTKEGDETKLLDIREASDDRKQG 386

Query: 227 ETVFSSNPNVDIYVAENPTTALMSNVKEFAEFRQTVLDEEQPQQPGESTYNSFKETEPIN 286
           ETVFSSN NVD Y AENPTTALM N+ E  E RQ  LDE Q  QP E TYN F E+EPIN
Sbjct: 387 ETVFSSNSNVDTYGAENPTTALMFNLNENTESRQIFLDE-QAAQPVECTYNYFIESEPIN 446

Query: 287 VMDKGCQAYEQIKESRVINLSDDDEPPGVEEHDWNNKLRSLIWHYLDPQGDIQGPFCLAS 346
            +DKGCQA EQIKES VI+LSDDDEPP  EEHDWNNKL+SLIW+YLDPQGD+QGPFCLAS
Sbjct: 447 AVDKGCQANEQIKESTVIDLSDDDEPPRAEEHDWNNKLKSLIWYYLDPQGDVQGPFCLAS 506

Query: 347 LKNWKDANYFPSDFKVWKTGQSQDQAVLLSDILSPFFS 385
           LKNWKDANYFPSDFKVW+TGQ+QDQAVLL+DILSPFFS
Sbjct: 507 LKNWKDANYFPSDFKVWRTGQTQDQAVLLNDILSPFFS 543

[Close]

BLAST of Lsi11G015790 vs. NCBI nr
Match: gi|778726126|ref|XP_011659061.1| (PREDICTED: uncharacterized protein At5g08430 isoform X3 [Cucumis sativus])

HSP 1 Score: 340.5 bits (872), Expect = 3.8e-90
Identity = 170/218 (77.98%), Postives = 184/218 (84.40%), Query Frame = 1


Query: 167 LLQTAEEQSRILREIPPVIADETEIKGIYAGANQGDNVTNEGDETKLLVMREVLDDTNQG 226
           LLQ+A EQSRILREIP VIADETE  GI+A A+Q DNVT EGDETKLL +RE  DD  QG
Sbjct: 307 LLQSAAEQSRILREIPQVIADETEFGGIHASADQADNVTKEGDETKLLDIREASDDRKQG 366

Query: 227 ETVFSSNPNVDIYVAENPTTALMSNVKEFAEFRQTVLDEEQPQQPGESTYNSFKETEPIN 286
           ETVFSSN NVD Y AENPTTALM N+ E  E RQ  LDE Q  QP E TYN F E+EPIN
Sbjct: 367 ETVFSSNSNVDTYGAENPTTALMFNLNENTESRQIFLDE-QAAQPVECTYNYFIESEPIN 426

Query: 287 VMDKGCQAYEQIKESRVINLSDDDEPPGVEEHDWNNKLRSLIWHYLDPQGDIQGPFCLAS 346
            +DKGCQA EQIKES VI+LSDDDEPP  EEHDWNNKL+SLIW+YLDPQGD+QGPFCLAS
Sbjct: 427 AVDKGCQANEQIKESTVIDLSDDDEPPRAEEHDWNNKLKSLIWYYLDPQGDVQGPFCLAS 486

Query: 347 LKNWKDANYFPSDFKVWKTGQSQDQAVLLSDILSPFFS 385
           LKNWKDANYFPSDFKVW+TGQ+QDQAVLL+DILSPFFS
Sbjct: 487 LKNWKDANYFPSDFKVWRTGQTQDQAVLLNDILSPFFS 523

[Close]

BLAST of Lsi11G015790 vs. NCBI nr
Match: gi|700189078|gb|KGN44311.1| (hypothetical protein Csa_7G252680 [Cucumis sativus])

HSP 1 Score: 340.5 bits (872), Expect = 3.8e-90
Identity = 170/218 (77.98%), Postives = 184/218 (84.40%), Query Frame = 1


Query: 167 LLQTAEEQSRILREIPPVIADETEIKGIYAGANQGDNVTNEGDETKLLVMREVLDDTNQG 226
           LLQ+A EQSRILREIP VIADETE  GI+A A+Q DNVT EGDETKLL +RE  DD  QG
Sbjct: 33  LLQSAAEQSRILREIPQVIADETEFGGIHASADQADNVTKEGDETKLLDIREASDDRKQG 92

Query: 227 ETVFSSNPNVDIYVAENPTTALMSNVKEFAEFRQTVLDEEQPQQPGESTYNSFKETEPIN 286
           ETVFSSN NVD Y AENPTTALM N+ E  E RQ  LDE Q  QP E TYN F E+EPIN
Sbjct: 93  ETVFSSNSNVDTYGAENPTTALMFNLNENTESRQIFLDE-QAAQPVECTYNYFIESEPIN 152

Query: 287 VMDKGCQAYEQIKESRVINLSDDDEPPGVEEHDWNNKLRSLIWHYLDPQGDIQGPFCLAS 346
            +DKGCQA EQIKES VI+LSDDDEPP  EEHDWNNKL+SLIW+YLDPQGD+QGPFCLAS
Sbjct: 153 AVDKGCQANEQIKESTVIDLSDDDEPPRAEEHDWNNKLKSLIWYYLDPQGDVQGPFCLAS 212

Query: 347 LKNWKDANYFPSDFKVWKTGQSQDQAVLLSDILSPFFS 385
           LKNWKDANYFPSDFKVW+TGQ+QDQAVLL+DILSPFFS
Sbjct: 213 LKNWKDANYFPSDFKVWRTGQTQDQAVLLNDILSPFFS 249

[Close]

BLAST of Lsi11G015790 vs. NCBI nr
Match: gi|778726122|ref|XP_011659060.1| (PREDICTED: uncharacterized protein At5g08430 isoform X2 [Cucumis sativus])

HSP 1 Score: 340.5 bits (872), Expect = 3.8e-90
Identity = 170/218 (77.98%), Postives = 184/218 (84.40%), Query Frame = 1


Query: 167 LLQTAEEQSRILREIPPVIADETEIKGIYAGANQGDNVTNEGDETKLLVMREVLDDTNQG 226
           LLQ+A EQSRILREIP VIADETE  GI+A A+Q DNVT EGDETKLL +RE  DD  QG
Sbjct: 310 LLQSAAEQSRILREIPQVIADETEFGGIHASADQADNVTKEGDETKLLDIREASDDRKQG 369

Query: 227 ETVFSSNPNVDIYVAENPTTALMSNVKEFAEFRQTVLDEEQPQQPGESTYNSFKETEPIN 286
           ETVFSSN NVD Y AENPTTALM N+ E  E RQ  LDE Q  QP E TYN F E+EPIN
Sbjct: 370 ETVFSSNSNVDTYGAENPTTALMFNLNENTESRQIFLDE-QAAQPVECTYNYFIESEPIN 429

Query: 287 VMDKGCQAYEQIKESRVINLSDDDEPPGVEEHDWNNKLRSLIWHYLDPQGDIQGPFCLAS 346
            +DKGCQA EQIKES VI+LSDDDEPP  EEHDWNNKL+SLIW+YLDPQGD+QGPFCLAS
Sbjct: 430 AVDKGCQANEQIKESTVIDLSDDDEPPRAEEHDWNNKLKSLIWYYLDPQGDVQGPFCLAS 489

Query: 347 LKNWKDANYFPSDFKVWKTGQSQDQAVLLSDILSPFFS 385
           LKNWKDANYFPSDFKVW+TGQ+QDQAVLL+DILSPFFS
Sbjct: 490 LKNWKDANYFPSDFKVWRTGQTQDQAVLLNDILSPFFS 526

[Close]

BLAST of Lsi11G015790 vs. NCBI nr
Match: gi|659092449|ref|XP_008447067.1| (PREDICTED: uncharacterized protein At5g08430 isoform X5 [Cucumis melo])

HSP 1 Score: 337.8 bits (865), Expect = 2.5e-89
Identity = 169/218 (77.52%), Postives = 183/218 (83.94%), Query Frame = 1


Query: 167 LLQTAEEQSRILREIPPVIADETEIKGIYAGANQGDNVTNEGDETKLLVMREVLDDTNQG 226
           LLQ+A EQSRILREIP VIADETE  GIYA A+Q DNVT EGD+ KLLV REV DD  QG
Sbjct: 307 LLQSAAEQSRILREIPQVIADETEFGGIYASADQADNVTKEGDDRKLLVTREVSDDRKQG 366

Query: 227 ETVFSSNPNVDIYVAENPTTALMSNVKEFAEFRQTVLDEEQPQQPGESTYNSFKETEPIN 286
           ETVFSSN  VD Y AENPTTALM N+ E AE RQ  LDE+ PQ P E T ++ KETEPIN
Sbjct: 367 ETVFSSNSTVDTYGAENPTTALMFNLNENAESRQVFLDEQSPQ-PVECTCDNVKETEPIN 426

Query: 287 VMDKGCQAYEQIKESRVINLSDDDEPPGVEEHDWNNKLRSLIWHYLDPQGDIQGPFCLAS 346
            +DKG Q  EQIKES VI+LSDDDEPP  EEHDWNN+L+SLIWHYLDPQGD+QGPFCLAS
Sbjct: 427 AVDKGRQENEQIKESTVIDLSDDDEPPRTEEHDWNNRLKSLIWHYLDPQGDVQGPFCLAS 486

Query: 347 LKNWKDANYFPSDFKVWKTGQSQDQAVLLSDILSPFFS 385
           LKNWKDANYFPSDFKVWKTGQ+QDQAVLL+DILSPFFS
Sbjct: 487 LKNWKDANYFPSDFKVWKTGQTQDQAVLLNDILSPFFS 523

The following BLAST results are available for this feature:

BLAST of Lsi11G015790 vs. Swiss-Prot


Match Name	E-value	Identity	Description
Y5843_ARATH	1.9e-20	34.01	Uncharacterized protein At5g08430 OS=Arabidopsis thaliana GN=At5g08430 PE=1 SV=2	[more]
C3H19_ARATH	2.7e-11	46.43	Zinc finger CCCH domain-containing protein 19 OS=Arabidopsis thaliana GN=NERD PE...	[more]
C3H44_ARATH	7.9e-11	37.35	Zinc finger CCCH domain-containing protein 44 OS=Arabidopsis thaliana GN=At3g511...	[more]

BLAST of Lsi11G015790 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K932_CUCSA	2.7e-90	77.98	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G252680 PE=4 SV=1	[more]
A0A0B0NDW2_GOSAR	9.0e-30	37.77	Uncharacterized protein OS=Gossypium arboreum GN=F383_12743 PE=4 SV=1	[more]
A0A0D2RN86_GOSRA	2.2e-28	37.77	Uncharacterized protein OS=Gossypium raimondii GN=B456_005G172400 PE=4 SV=1	[more]
A0A0D2RN81_GOSRA	8.4e-28	38.33	Uncharacterized protein OS=Gossypium raimondii GN=B456_005G172400 PE=4 SV=1	[more]
A0A0D2PUH6_GOSRA	2.4e-27	39.21	Uncharacterized protein OS=Gossypium raimondii GN=B456_005G172400 PE=4 SV=1	[more]

BLAST of Lsi11G015790 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G08430.1	1.1e-21	34.01	SWIB/MDM2 domain;Plus-3;GYF	[more]
AT5G23480.1	3.6e-14	27.08	SWIB/MDM2 domain;Plus-3;GYF	[more]
AT2G16485.1	1.5e-12	46.43	nucleic acid binding;zinc ion binding;DNA binding	[more]
AT3G51120.1	4.4e-12	37.35	DNA binding;zinc ion binding;nucleic acid binding;nucleic acid bindi...	[more]
AT2G18090.1	1.4e-10	37.93	PHD finger family protein / SWIB complex BAF60b domain-containing pr...	[more]

BLAST of Lsi11G015790 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449461126\|ref\|XP_004148294.1\|	3.8e-90	77.98	PREDICTED: uncharacterized protein At5g08430 isoform X1 [Cucumis sativus]	[more]
gi\|778726126\|ref\|XP_011659061.1\|	3.8e-90	77.98	PREDICTED: uncharacterized protein At5g08430 isoform X3 [Cucumis sativus]	[more]
gi\|700189078\|gb\|KGN44311.1\|	3.8e-90	77.98	hypothetical protein Csa_7G252680 [Cucumis sativus]	[more]
gi\|778726122\|ref\|XP_011659060.1\|	3.8e-90	77.98	PREDICTED: uncharacterized protein At5g08430 isoform X2 [Cucumis sativus]	[more]
gi\|659092449\|ref\|XP_008447067.1\|	2.5e-89	77.52	PREDICTED: uncharacterized protein At5g08430 isoform X5 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR003169	GYF

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0006352	DNA-templated transcription, initiation
biological_process	GO:0016570	histone modification
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005634	nucleus
molecular_function	GO:0005515	protein binding
molecular_function	GO:0003677	DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi11G015790.1	Lsi11G015790.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003169	GYF domain	GENE3D	G3DSA:3.30.1490.40		coord: 328..381 score: 5.1
IPR003169	GYF domain	PFAM	PF02213	GYF	coord: 328..370 score: 5.8
IPR003169	GYF domain	SMART	SM00444	gyf_5	coord: 327..382 score: 6.
IPR003169	GYF domain	PROFILE	PS50829	GYF	coord: 326..380 score: 14
IPR003169	GYF domain	unknown	SSF55277	GYF domain	coord: 321..380 score: 4.45
None	No IPR available	PANTHER	PTHR14445	GRB10 INTERACTING GYF PROTEIN	coord: 167..384 score: 2.5
None	No IPR available	PANTHER	PTHR14445:SF39	SWIB/MDM2, PLUS-3 AND GYF DOMAIN-CONTAINING PROTEIN-RELATED	coord: 167..384 score: 2.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi11G015790	Csa7G252680	Cucumber (Chinese Long) v2	culsiB499
Lsi11G015790	CSPI07G11190	Wild cucumber (PI 183967)	cpilsiB511
Lsi11G015790	Cucsa.240190	Cucumber (Gy14) v1	cgylsiB397
Lsi11G015790	CmaCh19G011240	Cucurbita maxima (Rimu)	cmalsiB474
Lsi11G015790	CmoCh19G011550	Cucurbita moschata (Rifu)	cmolsiB459
Lsi11G015790	MELO3C012577	Melon (DHL92) v3.5.1	lsimeB091
Lsi11G015790	ClCG09G022930	Watermelon (Charleston Gray)	lsiwcgB076
Lsi11G015790	MELO3C012577.2	Melon (DHL92) v3.6.1	lsimedB097
Lsi11G015790	Cla97C09G184500	Watermelon (97103) v2	lsiwmbB109
Lsi11G015790	Cp4.1LG15g09090	Cucurbita pepo (Zucchini)	cpelsiB201
Lsi11G015790	CsGy7G010560	Cucumber (Gy14) v2	cgyblsiB468
Lsi11G015790	CsaV3_7G023180	Cucumber (Chinese Long) v3	cuclsiB533

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi11G015790	Silver-seed gourd	carlsiB484
Lsi11G015790	Wax gourd	lsiwgoB114
Lsi11G015790	Cucurbita maxima (Rimu)	cmalsiB516
Lsi11G015790	Cucurbita pepo (Zucchini)	cpelsiB606
Lsi11G015790	Watermelon (97103) v1	lsiwmB089