Lsi11G012800 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi11G012800
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionZinc finger family protein
Locationchr11 : 21415643 .. 21416497 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATGCACATATAAACTCCGTCTCCATTGCCAGTAGTAGCAGCTCTCCTCTCGACCTCACCATTCCTTTTGAACTCCAAATGGTCGAAACTGCAACGTCTTTCGACTCCAATCGTCGCCGTCCCCGCAAGAAACGGTCAAGAATCGAAAAGGACTCCACCGACACCGCCGTCGTCGCTTCCAAGGCTAAGTATAGCAAGAAACCCGATCCTAATGCGCCGAAGATCACTCCTCCATGTACTGAGTGTGGGAAGAGATTTTGGTCAGATAAAGCGCTTTTCGGTCATATGAGGTGTCATCCTGAACGTCAATGGCGAGGGATTAATCCGCCGCTTAATTTCCGTCGTCCGATTTCGGTTTCTCCTTTTAGCCCTAATATCGCTACTGATTTAGAAGAATCTTCGTTTACTGAAGAAGATCAAGACATCGCTAATTGCTTGCTAATGCTTGCGAATAGCCCTAATTCAATTTCTAGGGTTTCCGATTGTCGATTCGAATGCTCGAGTTGTAAGAAAGTGTTTGGATCGCATCAAGCACTTGGTGGACATAGGGCAAGTCATAAGAATGTGAGAGGCTGTTTCGCTATAGCAAAGAGCGATGAAGAAACAGAAGATGAAATTACTCTGTTAGGGCATGAGAGGAGTATTAATCTGGAGAATAAAATGTCGTTGATGATTTTAGGAACAACAGAGCATAAATGTAGTAGTGGCCACAAGAGATTCCATTGGGAGAATAATGCAGCTGCAGAAGAAGGCTTTGTTACTTTCGACTTGAACATGCCTGCTCCTCTTGAAGATGGTTCATCTTCTTCATCTTCTTCAGGTCTCACTCTGGATCTCAGGTTGGGCCTTTGA

mRNA sequence

ATGAATGCACATATAAACTCCGTCTCCATTGCCAGTAGTAGCAGCTCTCCTCTCGACCTCACCATTCCTTTTGAACTCCAAATGGTCGAAACTGCAACGTCTTTCGACTCCAATCGTCGCCGTCCCCGCAAGAAACGGTCAAGAATCGAAAAGGACTCCACCGACACCGCCGTCGTCGCTTCCAAGGCTAAGTATAGCAAGAAACCCGATCCTAATGCGCCGAAGATCACTCCTCCATGTACTGAGTGTGGGAAGAGATTTTGGTCAGATAAAGCGCTTTTCGGTCATATGAGGTGTCATCCTGAACGTCAATGGCGAGGGATTAATCCGCCGCTTAATTTCCGTCGTCCGATTTCGGTTTCTCCTTTTAGCCCTAATATCGCTACTGATTTAGAAGAATCTTCGTTTACTGAAGAAGATCAAGACATCGCTAATTGCTTGCTAATGCTTGCGAATAGCCCTAATTCAATTTCTAGGGTTTCCGATTGTCGATTCGAATGCTCGAGTTGTAAGAAAGTGTTTGGATCGCATCAAGCACTTGGTGGACATAGGGCAAGTCATAAGAATGTGAGAGGCTGTTTCGCTATAGCAAAGAGCGATGAAGAAACAGAAGATGAAATTACTCTGTTAGGGCATGAGAGGAGTATTAATCTGGAGAATAAAATGTCGTTGATGATTTTAGGAACAACAGAGCATAAATGTAGTAGTGGCCACAAGAGATTCCATTGGGAGAATAATGCAGCTGCAGAAGAAGGCTTTGTTACTTTCGACTTGAACATGCCTGCTCCTCTTGAAGATGGTTCATCTTCTTCATCTTCTTCAGGTCTCACTCTGGATCTCAGGTTGGGCCTTTGA

Coding sequence (CDS)

ATGAATGCACATATAAACTCCGTCTCCATTGCCAGTAGTAGCAGCTCTCCTCTCGACCTCACCATTCCTTTTGAACTCCAAATGGTCGAAACTGCAACGTCTTTCGACTCCAATCGTCGCCGTCCCCGCAAGAAACGGTCAAGAATCGAAAAGGACTCCACCGACACCGCCGTCGTCGCTTCCAAGGCTAAGTATAGCAAGAAACCCGATCCTAATGCGCCGAAGATCACTCCTCCATGTACTGAGTGTGGGAAGAGATTTTGGTCAGATAAAGCGCTTTTCGGTCATATGAGGTGTCATCCTGAACGTCAATGGCGAGGGATTAATCCGCCGCTTAATTTCCGTCGTCCGATTTCGGTTTCTCCTTTTAGCCCTAATATCGCTACTGATTTAGAAGAATCTTCGTTTACTGAAGAAGATCAAGACATCGCTAATTGCTTGCTAATGCTTGCGAATAGCCCTAATTCAATTTCTAGGGTTTCCGATTGTCGATTCGAATGCTCGAGTTGTAAGAAAGTGTTTGGATCGCATCAAGCACTTGGTGGACATAGGGCAAGTCATAAGAATGTGAGAGGCTGTTTCGCTATAGCAAAGAGCGATGAAGAAACAGAAGATGAAATTACTCTGTTAGGGCATGAGAGGAGTATTAATCTGGAGAATAAAATGTCGTTGATGATTTTAGGAACAACAGAGCATAAATGTAGTAGTGGCCACAAGAGATTCCATTGGGAGAATAATGCAGCTGCAGAAGAAGGCTTTGTTACTTTCGACTTGAACATGCCTGCTCCTCTTGAAGATGGTTCATCTTCTTCATCTTCTTCAGGTCTCACTCTGGATCTCAGGTTGGGCCTTTGA

Protein sequence

MNAHINSVSIASSSSSPLDLTIPFELQMVETATSFDSNRRRPRKKRSRIEKDSTDTAVVASKAKYSKKPDPNAPKITPPCTECGKRFWSDKALFGHMRCHPERQWRGINPPLNFRRPISVSPFSPNIATDLEESSFTEEDQDIANCLLMLANSPNSISRVSDCRFECSSCKKVFGSHQALGGHRASHKNVRGCFAIAKSDEETEDEITLLGHERSINLENKMSLMILGTTEHKCSSGHKRFHWENNAAAEEGFVTFDLNMPAPLEDGSSSSSSSGLTLDLRLGL
Homology
[Close]
BLAST of Lsi11G012800 vs. Swiss-Prot
Match: ZAT3_ARATH (Zinc finger protein ZAT3 OS=Arabidopsis thaliana GN=ZAT3 PE=1 SV=1)

HSP 1 Score: 231.9 bits (590), Expect = 8.8e-60
Identity = 129/261 (49.43%), Postives = 168/261 (64.37%), Query Frame = 1 

Query: 32  ATSFDSNRRRPRKKRSR-IEKDSTDTAVVASKAKYSKKPDPNAPKITPPCTECGKRFWSD 91
           ++S+D +   P+KKR++ +   S+ +   ASK KY+KKPDPNAPKIT PCTECG++FWS 
Sbjct: 33  SSSYDHS---PKKKRTKTVASSSSSSPKSASKPKYTKKPDPNAPKITRPCTECGRKFWSW 92

Query: 92  KALFGHMRCHPERQWRGINPPLNFRRPISVSPFSPNIATDLEESSFTEEDQDIANCLLML 151
           KALFGHMRCHPERQWRGINPP N+R P + S    N       S  +EED ++A+CLLML
Sbjct: 93  KALFGHMRCHPERQWRGINPPPNYRVPTAASSKQLNQILPNWVSFMSEEDHEVASCLLML 152

Query: 152 ANSPNSISRVSDCRFECSSCKKVFGSHQALGGHRASHKNVRGCFAIAKSDEETEDEITLL 211
           +N   S S +   RFEC  CKKVFGSHQALGGHRASHKNV+GCFAI    ++     T  
Sbjct: 153 SNGTPSSSSIE--RFECGGCKKVFGSHQALGGHRASHKNVKGCFAITNVTDDPMTVSTSS 212

Query: 212 GHER-----SINLENKMSLMILGTTEHKCSSGHKRFHWENNAAAEEGFVT--FDLNMPAP 271
           GH+      + +  +K ++     +  +   GH R HWE     EE  ++   DLN+P  
Sbjct: 213 GHDHQGKILTFSGHHKCNICFRVFSSGQALGGHMRCHWEKE---EEPMISGALDLNVPPT 272

Query: 272 LEDGSSSSSSSGLTLDLRLGL 285
           ++D  S+S +SG  LDLRLGL
Sbjct: 273 IQD-LSTSDTSGCCLDLRLGL 284

[Close]
BLAST of Lsi11G012800 vs. Swiss-Prot
Match: ZAT2_ARATH (Zinc finger protein ZAT2 OS=Arabidopsis thaliana GN=ZAT2 PE=1 SV=1)

HSP 1 Score: 197.6 bits (501), Expect = 1.8e-49
Identity = 123/290 (42.41%), Postives = 174/290 (60.00%), Query Frame = 1 

Query: 10  IASSSSSPLDLTIPFELQMVETATSFDSNRRRPRKKRSRIEKDSTDTAVVASKAKYSKKP 69
           ++++S+S  +  IPF    V T  S++ N   PR+KR+++  +   ++  + + K   +P
Sbjct: 1   MSNTSNSDPNSDIPFASSNV-TLPSYNQN---PRRKRTKLTNNEVGSSSSSPRPKPVTQP 60

Query: 70  DPNAPKITPPCTECGKRFWSDKALFGHMRCHPERQWRGINPPLNFRRPISVSPFSPNIAT 129
           DP+A +I  PCTECGK+F S KALFGHMRCHPERQWRGINPP NF+R I+ +  S + + 
Sbjct: 61  DPDASQIARPCTECGKQFGSLKALFGHMRCHPERQWRGINPPSNFKRRINSNAASSSSSW 120

Query: 130 DLEESSFTEEDQDIANCLLMLANS--PNSISRVSDCRFECSSCKKVFGSHQALGGHRASH 189
           D      +EE+ +IA+CLLM+AN   P   S V + RFEC  CKKVFGSHQALGGHRA+H
Sbjct: 121 DP-----SEEEHNIASCLLMMANGDVPTRSSEVEE-RFECDGCKKVFGSHQALGGHRATH 180

Query: 190 KNVRGCFAIAKSDEETEDEITLLGHERSINLENKMSLMILGTTEHKCS------------ 249
           K+V+GCFA     E+          +  ++ +   S+ ++    H+C+            
Sbjct: 181 KDVKGCFANKNITEDPPPP----PPQEIVDQDKGKSVKLVSGMNHRCNICSRVFSSGQAL 240

Query: 250 SGHKRFHWENNAAAEEGFVT-FDLNMPAPLEDGSSSSSSSGLTLDLRLGL 285
            GH R HWE +   EE  V   DLN+PA     +SS ++ G +LDLRLGL
Sbjct: 241 GGHMRCHWEKD--QEENQVRGIDLNVPA----ATSSDTTLGCSLDLRLGL 270

[Close]
BLAST of Lsi11G012800 vs. Swiss-Prot
Match: ZAT4_ARATH (Zinc finger protein ZAT4 OS=Arabidopsis thaliana GN=ZAT4 PE=2 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 1.4e-09
Identity = 55/173 (31.79%), Postives = 77/173 (44.51%), Query Frame = 1 

Query: 134 SSFTEEDQDIANCLLMLA---------------------NSPNSISRVSDCRFECSSCKK 193
           +S T  ++D+A CL+ML+                     +S +  S  S  RF+C +C K
Sbjct: 142 ASDTTTEEDLAFCLIMLSRDKWKQQKKKKQRVEEDETDHDSEDYKSSKSRGRFKCETCGK 201

Query: 194 VFGSHQALGGHRASHKNVRGCFAIAKSDEETEDEITLLGHERSINLENKMSLMILGTTEH 253
           VF S+QALGGHRASHK  + C       E+ E E  L   E+ +   ++  +     T  
Sbjct: 202 VFKSYQALGGHRASHKKNKACMT---KTEQVETEYVLGVKEKKV---HECPICFRVFTSG 261

Query: 254 KCSSGHKRFHWENNAAA------------EEGFV---TFDLNMPAPLEDGSSS 271
           +   GHKR H  N  A             EE  V     DLN+PAP E+  +S
Sbjct: 262 QALGGHKRSHGSNIGAGRGLSVSQIVQIEEEVSVKQRMIDLNLPAPNEEDETS 308

[Close]
BLAST of Lsi11G012800 vs. Swiss-Prot
Match: ZAT1_ARATH (Zinc finger protein ZAT1 OS=Arabidopsis thaliana GN=ZAT1 PE=2 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 4.2e-09
Identity = 42/112 (37.50%), Postives = 60/112 (53.57%), Query Frame = 1 

Query: 165 FECSSCKKVFGSHQALGGHRASHKNVRGCFAIAKSDEETEDEITLLGHERSINLENKMSL 224
           FEC +C+KVF S+QALGGHRASHK       IA++D+   DE+     ++S +  ++  +
Sbjct: 160 FECETCEKVFKSYQALGGHRASHKK-----KIAETDQLGSDELK-KKKKKSTSSHHECPI 219

Query: 225 MILGTTEHKCSSGHKRFH--WENNAAAEEGFV--TFDLNMPAPLEDGSSSSS 273
                T  +   GHKR H    N      G +    DLN+PAP E+   +SS
Sbjct: 220 CAKVFTSGQALGGHKRSHASANNEFTRRSGIIISLIDLNLPAPSEEEEMASS 265

[Close]
BLAST of Lsi11G012800 vs. Swiss-Prot
Match: ZAT10_ARATH (Zinc finger protein ZAT10 OS=Arabidopsis thaliana GN=ZAT10 PE=2 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 3.9e-07
Identity = 38/122 (31.15%), Postives = 55/122 (45.08%), Query Frame = 1 

Query: 129 TDLEESSFTEEDQDIANCLLMLANS---PNSISRVSDCRFECSSCKKVFGSHQALGGHRA 188
           +D    + TEE+  +A CL++LA     P     V    ++CS C K F S+QALGGH+A
Sbjct: 42  SDFHHQNLTEEEY-LAFCLMLLARDNRQPPPPPAVEKLSYKCSVCDKTFSSYQALGGHKA 101

Query: 189 SH-KNVRGCFAIAKSDEETEDEITLLGHERSINLENKMSLMILGTTEHKCSSGHKRFHWE 247
           SH KN+    +    D  T    T           +  ++        +   GHKR H+E
Sbjct: 102 SHRKNLSQTLSGGGDDHSTSSATTTSAVTTGSGKSHVCTICNKSFPSGQALGGHKRCHYE 161

[Close]
BLAST of Lsi11G012800 vs. TrEMBL
Match: A0A0A0K0V4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G024090 PE=4 SV=1)

HSP 1 Score: 377.1 bits (967), Expect = 1.9e-101
Identity = 209/301 (69.44%), Postives = 235/301 (78.07%), Query Frame = 1 

Query: 1   MNAHINSVSIASSSSSPLDLTI-PFELQMVETATSFDS----NRRRPRKKRSRIEKDS-- 60
           MN H NS+SI +++SSP+DLTI PF+     + +SFD     N RRPRKKRSR +     
Sbjct: 1   MNPHFNSLSITTTTSSPIDLTIIPFQ---PSSTSSFDDSSLPNPRRPRKKRSRTQTHDHH 60

Query: 61  --TDTAVVASKAKYSKKPDPNAPKITPPCTECGKRFWSDKALFGHMRCHPERQWRGINPP 120
             +      SK+KY+KKPDPNAPKIT PCTECGK+FWSDKALFGHMRCHPERQWRGI PP
Sbjct: 61  HYSTLLTTTSKSKYTKKPDPNAPKITRPCTECGKKFWSDKALFGHMRCHPERQWRGIIPP 120

Query: 121 LNFRRPISVSP-FSPNIATDLEESSFTEEDQDIANCLLMLANSPN-SISRVSDCRFECSS 180
           +N+RRP+S SP FSPN+  +   +SFTEEDQDIAN LLMLAN PN SISRVSD RFECSS
Sbjct: 121 VNYRRPVSASPNFSPNV--EHSSNSFTEEDQDIANSLLMLANGPNFSISRVSDSRFECSS 180

Query: 181 CKKVFGSHQALGGHRASHKNVRGCFAIAKSD-EETEDEITLLG----HERSINLENKMSL 240
           CKKVFGSHQALGGHRASHKNVRGCFA+A+SD EETEDEITL G    HERS NLEN+MS+
Sbjct: 181 CKKVFGSHQALGGHRASHKNVRGCFAMARSDEEETEDEITLFGDFGRHERSFNLENEMSM 240

Query: 241 MILGTTEHKCSSGHKRFHWENNAAA-EEGFVTFDLNMPAPLEDGSSSSSSSGLTLDLRLG 285
           MILGT  H+     KRF WENNAA  +E FV  DLN+PAPLED SSSS SS LTLDLRLG
Sbjct: 241 MILGTENHE-----KRFQWENNAATDQERFVNLDLNLPAPLEDDSSSSYSSSLTLDLRLG 291

[Close]
BLAST of Lsi11G012800 vs. TrEMBL
Match: B9HPY6_POPTR (Zinc finger family protein OS=Populus trichocarpa GN=POPTR_0009s16770g PE=4 SV=1)

HSP 1 Score: 249.2 bits (635), Expect = 6.0e-63
Identity = 145/276 (52.54%), Postives = 181/276 (65.58%), Query Frame = 1 

Query: 38  NRRRPRKKRSRIEK--DSTDTAVVASKAKYSKKPDPNAPKITPPCTECGKRFWSDKALFG 97
           + + PRKKR+R+ K   S   +   S+ KY  KPDP+APKIT PC+ECGK+FWS KALFG
Sbjct: 25  HHQNPRKKRTRLIKIEPSLLPSSTISRPKYYNKPDPSAPKITRPCSECGKKFWSWKALFG 84

Query: 98  HMRCHPERQWRGINPPLNFRRPISVSPFSPNIATDLE-ESSFTEEDQDIANCLLMLANSP 157
           HMRCHPERQWRGINPP N+RRP+S      +IA     E   T ED ++A+CLLMLA+S 
Sbjct: 85  HMRCHPERQWRGINPPPNYRRPVSPIDQPVSIANPTNWEDMMTAEDHEVASCLLMLADSD 144

Query: 158 NSISRVSDC-RFECSSCKKVFGSHQALGGHRASHKNVRGCFAIAKSDE-ETEDEITLLGH 217
            +     +C RFECSSC+KVFGSHQALGGHRASHKNV+GCFA+ +SD  E  ++    G 
Sbjct: 145 GAAMLEVNCTRFECSSCRKVFGSHQALGGHRASHKNVKGCFALTRSDGCEVVEDHGGSGD 204

Query: 218 ERSINLENKMSLMILGTTEHKCS------------SGHKRFHW----ENNAAAEEG--FV 277
            +    +N  +L++LG   HKCS             GH R HW    EN+++  +G  F+
Sbjct: 205 VKENVEDNSKALLVLG---HKCSICLRMFPSGQALGGHMRCHWEKGEENSSSMNQGLHFL 264

Query: 278 T------FDLNMPAPLEDGSSSSSSSGLTLDLRLGL 285
           T       DLN+PAP+ED SSSS SSGLTLDLRL L
Sbjct: 265 TAKEGCGLDLNLPAPMEDESSSSYSSGLTLDLRLCL 297

[Close]
BLAST of Lsi11G012800 vs. TrEMBL
Match: A0A061DZD1_THECC (C2H2-like zinc finger protein, putative OS=Theobroma cacao GN=TCM_006454 PE=4 SV=1)

HSP 1 Score: 245.0 bits (624), Expect = 1.1e-61
Identity = 154/306 (50.33%), Postives = 179/306 (58.50%), Query Frame = 1 

Query: 32  ATSFDSNRRRPRKKRSRIEKDSTD----TAVVASKAKYSKKPDPNAPKITPPCTECGKRF 91
           A ++D N   PRKKRS++ K        +    S+ KY+KKPDP+APKIT PC+ECG++F
Sbjct: 32  AVNYDPN---PRKKRSKLMKSDAGQFPTSPRTVSRPKYTKKPDPSAPKITRPCSECGRKF 91

Query: 92  WSDKALFGHMRCHPERQWRGINPPLNFRRPISVSPFSPNIATDLEESSFTEEDQDIANCL 151
           WS KALFGHMRCHPERQWRGINPP N+RRP+     SP   T+  E   TEED + A  L
Sbjct: 92  WSWKALFGHMRCHPERQWRGINPPPNYRRPV-----SPVKQTNKVEVLMTEEDHETAEAL 151

Query: 152 LMLANSPNSISRVSDC----------------------RFECSSCKKVFGSHQALGGHRA 211
           LMLAN P   +  S+C                      RFECSSCKKVFGSHQALGGHRA
Sbjct: 152 LMLANGP--AANESECGTSSQQGVQENDALGANLGANFRFECSSCKKVFGSHQALGGHRA 211

Query: 212 SHKNVRGCFAIAKSDE-ETEDEITLLGHERSI---NLE-NKMSLMILGTTEHKCS----- 271
           SHKNV+GCFAI +SD  E ED+    G E  I   N+E N   +M+LG   HKCS     
Sbjct: 212 SHKNVKGCFAITRSDGCEVEDQ---SGDEDGIVKENVEDNSKMMMVLG---HKCSICLRV 271

Query: 272 -------SGHKRFHWEN----------NAAAEEGFVTFDLNMPAPLEDGSSSSSSSGLTL 285
                   GHKR HWE           N  A       DLN+PAP+E   SSS SSGL L
Sbjct: 272 FPTGQALGGHKRCHWEKGDETSPNQGLNLLAAREDCGLDLNLPAPVETDPSSSHSSGLAL 321

[Close]
BLAST of Lsi11G012800 vs. TrEMBL
Match: A0A067KCV6_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18821 PE=4 SV=1)

HSP 1 Score: 242.7 bits (618), Expect = 5.6e-61
Identity = 147/290 (50.69%), Postives = 176/290 (60.69%), Query Frame = 1 

Query: 40  RRPRKKRSRIEKDSTDTAVVASKAKYSKKPDPNAPKITPPCTECGKRFWSDKALFGHMRC 99
           R+ R K   IE     + V+  K+ YSKKPDP+APKIT PCTECGKRFWS KALFGHMRC
Sbjct: 30  RKKRTKSLHIESHLIPSTVIKPKS-YSKKPDPSAPKITEPCTECGKRFWSWKALFGHMRC 89

Query: 100 HPERQWRGINPPLNFRRP-ISVSPFSPNIATDLEESSFTEEDQDIANCLLMLANSPN--- 159
           HPERQWRGINPP  ++RP + +         +  E+  T ED ++A CLL+LANS +   
Sbjct: 90  HPERQWRGINPPPKYQRPNLQIEQLG-----NANEAIMTAEDHEVAACLLLLANSESGTI 149

Query: 160 --------SISRVS----DCRFECSSCKKVFGSHQALGGHRASHKNVRGCFAIAKS---- 219
                   S S+V     +CRFECSSCKKVFGSHQALGGHRASHKNV+GCFAI +S    
Sbjct: 150 LETASAGCSHSQVQNDMVNCRFECSSCKKVFGSHQALGGHRASHKNVKGCFAITRSSDGC 209

Query: 220 ---DEETEDEI-TLLGHERSINLENKMSLMILGTTEHKCS------------SGHKRFHW 279
              DEE   ++  +  +    N  N  +LM+LG   HKCS             GHKR HW
Sbjct: 210 EMVDEENSGDVKEISDNNLEDNSINNKALMVLG---HKCSICLRVFSSGQALGGHKRCHW 269

Query: 280 EN---------NAAAEEGFVTFDLNMPAPLEDGSSSSSSSGLTLDLRLGL 285
           E          N   +EGF   DLN+PAP+E+ SSSS SS  TLDLRLGL
Sbjct: 270 EKLEDTASLSMNNQGKEGF-GLDLNLPAPVEEESSSSYSSSFTLDLRLGL 309

[Close]
BLAST of Lsi11G012800 vs. TrEMBL
Match: A0A067FLN6_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g038358mg PE=4 SV=1)

HSP 1 Score: 242.3 bits (617), Expect = 7.3e-61
Identity = 146/281 (51.96%), Postives = 178/281 (63.35%), Query Frame = 1 

Query: 44  KKRSRIEK-DSTDTAVVA---SKAKYSKKPDPNAPKITPPCTECGKRFWSDKALFGHMRC 103
           KKRS++ K D++ T+  +   SK KY+KKPDP APKIT PC+ECGK+FWS KALFGHMRC
Sbjct: 41  KKRSKLIKIDASATSSCSASVSKPKYAKKPDPGAPKITRPCSECGKKFWSWKALFGHMRC 100

Query: 104 HPERQWRGINPPLNFRRPISVSPFSPNIATDLEESSFTEEDQDIANCLLMLANSPNSISR 163
           HPERQWRGINPP NFRRP      SP       E+  T ED ++A CLLMLAN    +  
Sbjct: 101 HPERQWRGINPPPNFRRPA-----SPVKEVTSVENVMTVEDHEVAACLLMLANGDVGVGT 160

Query: 164 VS------------------DCRFECSSCKKVFGSHQALGGHRASHKNVRGCFAIAKSDE 223
            S                   CRFEC+SCKKVFGSHQALGGHRASHK+V+GCFAI +S +
Sbjct: 161 GSFQQGIQVQDTNEVNLGGVSCRFECNSCKKVFGSHQALGGHRASHKHVKGCFAITRSSD 220

Query: 224 ETE---DEITLLGHERSINLENKMSLMILGTTEHKCS------------SGHKRFHWE-- 283
             E   D  +    + +++ E KM +M+LG   HKCS             GHKR HWE  
Sbjct: 221 GCEIDHDHCSDGIVKENVDDERKM-MMVLG---HKCSICLRVFSSGQALGGHKRCHWEKG 280

Query: 284 NNAAAEEGFVTFDLNMPAPLEDGSSSSS-SSGLTLDLRLGL 285
           ++    +G    DLN+PAP++D S+SSS SSGLTLDLRLGL
Sbjct: 281 DDPLLNDGLNLLDLNLPAPVDDDSASSSYSSGLTLDLRLGL 312

[Close]
BLAST of Lsi11G012800 vs. TAIR10
Match: AT4G35280.1 (AT4G35280.1 C2H2-like zinc finger protein)

HSP 1 Score: 231.9 bits (590), Expect = 5.0e-61
Identity = 129/261 (49.43%), Postives = 168/261 (64.37%), Query Frame = 1 

Query: 32  ATSFDSNRRRPRKKRSR-IEKDSTDTAVVASKAKYSKKPDPNAPKITPPCTECGKRFWSD 91
           ++S+D +   P+KKR++ +   S+ +   ASK KY+KKPDPNAPKIT PCTECG++FWS 
Sbjct: 33  SSSYDHS---PKKKRTKTVASSSSSSPKSASKPKYTKKPDPNAPKITRPCTECGRKFWSW 92

Query: 92  KALFGHMRCHPERQWRGINPPLNFRRPISVSPFSPNIATDLEESSFTEEDQDIANCLLML 151
           KALFGHMRCHPERQWRGINPP N+R P + S    N       S  +EED ++A+CLLML
Sbjct: 93  KALFGHMRCHPERQWRGINPPPNYRVPTAASSKQLNQILPNWVSFMSEEDHEVASCLLML 152

Query: 152 ANSPNSISRVSDCRFECSSCKKVFGSHQALGGHRASHKNVRGCFAIAKSDEETEDEITLL 211
           +N   S S +   RFEC  CKKVFGSHQALGGHRASHKNV+GCFAI    ++     T  
Sbjct: 153 SNGTPSSSSIE--RFECGGCKKVFGSHQALGGHRASHKNVKGCFAITNVTDDPMTVSTSS 212

Query: 212 GHER-----SINLENKMSLMILGTTEHKCSSGHKRFHWENNAAAEEGFVT--FDLNMPAP 271
           GH+      + +  +K ++     +  +   GH R HWE     EE  ++   DLN+P  
Sbjct: 213 GHDHQGKILTFSGHHKCNICFRVFSSGQALGGHMRCHWEKE---EEPMISGALDLNVPPT 272

Query: 272 LEDGSSSSSSSGLTLDLRLGL 285
           ++D  S+S +SG  LDLRLGL
Sbjct: 273 IQD-LSTSDTSGCCLDLRLGL 284

[Close]
BLAST of Lsi11G012800 vs. TAIR10
Match: AT2G17180.1 (AT2G17180.1 C2H2-like zinc finger protein)

HSP 1 Score: 197.6 bits (501), Expect = 1.0e-50
Identity = 123/290 (42.41%), Postives = 174/290 (60.00%), Query Frame = 1 

Query: 10  IASSSSSPLDLTIPFELQMVETATSFDSNRRRPRKKRSRIEKDSTDTAVVASKAKYSKKP 69
           ++++S+S  +  IPF    V T  S++ N   PR+KR+++  +   ++  + + K   +P
Sbjct: 1   MSNTSNSDPNSDIPFASSNV-TLPSYNQN---PRRKRTKLTNNEVGSSSSSPRPKPVTQP 60

Query: 70  DPNAPKITPPCTECGKRFWSDKALFGHMRCHPERQWRGINPPLNFRRPISVSPFSPNIAT 129
           DP+A +I  PCTECGK+F S KALFGHMRCHPERQWRGINPP NF+R I+ +  S + + 
Sbjct: 61  DPDASQIARPCTECGKQFGSLKALFGHMRCHPERQWRGINPPSNFKRRINSNAASSSSSW 120

Query: 130 DLEESSFTEEDQDIANCLLMLANS--PNSISRVSDCRFECSSCKKVFGSHQALGGHRASH 189
           D      +EE+ +IA+CLLM+AN   P   S V + RFEC  CKKVFGSHQALGGHRA+H
Sbjct: 121 DP-----SEEEHNIASCLLMMANGDVPTRSSEVEE-RFECDGCKKVFGSHQALGGHRATH 180

Query: 190 KNVRGCFAIAKSDEETEDEITLLGHERSINLENKMSLMILGTTEHKCS------------ 249
           K+V+GCFA     E+          +  ++ +   S+ ++    H+C+            
Sbjct: 181 KDVKGCFANKNITEDPPPP----PPQEIVDQDKGKSVKLVSGMNHRCNICSRVFSSGQAL 240

Query: 250 SGHKRFHWENNAAAEEGFVT-FDLNMPAPLEDGSSSSSSSGLTLDLRLGL 285
            GH R HWE +   EE  V   DLN+PA     +SS ++ G +LDLRLGL
Sbjct: 241 GGHMRCHWEKD--QEENQVRGIDLNVPA----ATSSDTTLGCSLDLRLGL 270

[Close]
BLAST of Lsi11G012800 vs. TAIR10
Match: AT1G02040.1 (AT1G02040.1 C2H2-type zinc finger family protein)

HSP 1 Score: 76.6 bits (187), Expect = 2.7e-14
Identity = 54/171 (31.58%), Postives = 81/171 (47.37%), Query Frame = 1 

Query: 110 PPLNFRRPISVSPFSPNIATDLEESSFTEEDQDIANCLLMLANSPNS------------- 169
           PP    R +S      N++ +        ED+++ANCL++L+NS ++             
Sbjct: 86  PPWKRERSMSTQHHHLNLSPN--------EDEELANCLVLLSNSGDAHGGDQHKQHGHGK 145

Query: 170 ---ISRVSDCR-FECSSCKKVFGSHQALGGHRASHKNVRGCFAIAKSDEETEDEI----- 229
              + +    + F+C +CKKVF SHQALGGHRASHK V+GCFA    +EE E+E      
Sbjct: 146 GKTVKKQKTAQVFQCKACKKVFTSHQALGGHRASHKKVKGCFASQDKEEEEEEEYKEDDD 205

Query: 230 -TLLGHERSINLENKMSLMIL--GTTEHKCS------------SGHKRFHW 244
                 +   + E+K +  I    +  H+C+             GHKR HW
Sbjct: 206 DNDEDEDEEEDEEDKSTAHIARKRSNAHECTICHRVFSSGQALGGHKRCHW 248

[Close]
BLAST of Lsi11G012800 vs. TAIR10
Match: AT2G45120.1 (AT2G45120.1 C2H2-like zinc finger protein)

HSP 1 Score: 65.1 bits (157), Expect = 8.1e-11
Identity = 55/173 (31.79%), Postives = 77/173 (44.51%), Query Frame = 1 

Query: 134 SSFTEEDQDIANCLLMLA---------------------NSPNSISRVSDCRFECSSCKK 193
           +S T  ++D+A CL+ML+                     +S +  S  S  RF+C +C K
Sbjct: 142 ASDTTTEEDLAFCLIMLSRDKWKQQKKKKQRVEEDETDHDSEDYKSSKSRGRFKCETCGK 201

Query: 194 VFGSHQALGGHRASHKNVRGCFAIAKSDEETEDEITLLGHERSINLENKMSLMILGTTEH 253
           VF S+QALGGHRASHK  + C       E+ E E  L   E+ +   ++  +     T  
Sbjct: 202 VFKSYQALGGHRASHKKNKACMT---KTEQVETEYVLGVKEKKV---HECPICFRVFTSG 261

Query: 254 KCSSGHKRFHWENNAAA------------EEGFV---TFDLNMPAPLEDGSSS 271
           +   GHKR H  N  A             EE  V     DLN+PAP E+  +S
Sbjct: 262 QALGGHKRSHGSNIGAGRGLSVSQIVQIEEEVSVKQRMIDLNLPAPNEEDETS 308

[Close]
BLAST of Lsi11G012800 vs. TAIR10
Match: AT1G02030.1 (AT1G02030.1 C2H2-like zinc finger protein)

HSP 1 Score: 63.5 bits (153), Expect = 2.3e-10
Identity = 42/112 (37.50%), Postives = 60/112 (53.57%), Query Frame = 1 

Query: 165 FECSSCKKVFGSHQALGGHRASHKNVRGCFAIAKSDEETEDEITLLGHERSINLENKMSL 224
           FEC +C+KVF S+QALGGHRASHK       IA++D+   DE+     ++S +  ++  +
Sbjct: 160 FECETCEKVFKSYQALGGHRASHKK-----KIAETDQLGSDELK-KKKKKSTSSHHECPI 219

Query: 225 MILGTTEHKCSSGHKRFH--WENNAAAEEGFV--TFDLNMPAPLEDGSSSSS 273
                T  +   GHKR H    N      G +    DLN+PAP E+   +SS
Sbjct: 220 CAKVFTSGQALGGHKRSHASANNEFTRRSGIIISLIDLNLPAPSEEEEMASS 265

[Close]
BLAST of Lsi11G012800 vs. NCBI nr
Match: gi|659094517|ref|XP_008448104.1| (PREDICTED: zinc finger protein ZAT3 [Cucumis melo])

HSP 1 Score: 379.0 bits (972), Expect = 7.2e-102
Identity = 213/295 (72.20%), Postives = 236/295 (80.00%), Query Frame = 1 

Query: 2   NAHINSVSIASSSSSPLDL-TIPFELQMVETATSFDS-NRRRPRKKRSRIEKDS---TDT 61
           N H NS+S+ S+SSSP+DL TIPF+     + +SFDS NRRRPRKKRSR + D    + T
Sbjct: 3   NPHFNSLSVTSTSSSPIDLITIPFQ----PSTSSFDSSNRRRPRKKRSRTQTDDDHYSTT 62

Query: 62  AVVASKAKYSKKPDPNAPKITPPCTECGKRFWSDKALFGHMRCHPERQWRGINPPLNFRR 121
            +  SK+KY+KKPDPNAPKIT PCTECGK+FWSDKALFGHMRCHPERQWRGI PP+N+RR
Sbjct: 63  VLTTSKSKYTKKPDPNAPKITRPCTECGKKFWSDKALFGHMRCHPERQWRGIIPPVNYRR 122

Query: 122 PISVSP-FSPNIATDLEESSFTEEDQDIANCLLMLANSPN-SISRVSDCRFECSSCKKVF 181
           PISVSP FSPN+  +   +SFTEEDQDIAN LLMLAN PN SISRVSD RFECSSCKKVF
Sbjct: 123 PISVSPNFSPNL--EHSSNSFTEEDQDIANSLLMLANGPNFSISRVSDSRFECSSCKKVF 182

Query: 182 GSHQALGGHRASHKNVRGCFAIAKSD-EETEDEITLLG----HERSINLENKMSLMILGT 241
           GSHQALGGHRASHKNVRGCFA+AKSD EETEDEITL G    HE S NLENKMS+MIL T
Sbjct: 183 GSHQALGGHRASHKNVRGCFAMAKSDEEETEDEITLFGDFGRHESSFNLENKMSMMILET 242

Query: 242 TE-HKCSSGHKRFHWENNAAA-EEGFVTFDLNMPAPLEDGSSSSSSSGLTLDLRL 283
            + HK     KRF WENNAA  +E FV  DLN+PAPLED SSSS SS LTLDL L
Sbjct: 243 DQNHK-----KRFQWENNAATDQERFVNLDLNLPAPLEDDSSSSYSSSLTLDLSL 286

[Close]
BLAST of Lsi11G012800 vs. NCBI nr
Match: gi|778730079|ref|XP_011659693.1| (PREDICTED: zinc finger protein ZAT3 [Cucumis sativus])

HSP 1 Score: 377.1 bits (967), Expect = 2.7e-101
Identity = 209/301 (69.44%), Postives = 235/301 (78.07%), Query Frame = 1 

Query: 1   MNAHINSVSIASSSSSPLDLTI-PFELQMVETATSFDS----NRRRPRKKRSRIEKDS-- 60
           MN H NS+SI +++SSP+DLTI PF+     + +SFD     N RRPRKKRSR +     
Sbjct: 1   MNPHFNSLSITTTTSSPIDLTIIPFQ---PSSTSSFDDSSLPNPRRPRKKRSRTQTHDHH 60

Query: 61  --TDTAVVASKAKYSKKPDPNAPKITPPCTECGKRFWSDKALFGHMRCHPERQWRGINPP 120
             +      SK+KY+KKPDPNAPKIT PCTECGK+FWSDKALFGHMRCHPERQWRGI PP
Sbjct: 61  HYSTLLTTTSKSKYTKKPDPNAPKITRPCTECGKKFWSDKALFGHMRCHPERQWRGIIPP 120

Query: 121 LNFRRPISVSP-FSPNIATDLEESSFTEEDQDIANCLLMLANSPN-SISRVSDCRFECSS 180
           +N+RRP+S SP FSPN+  +   +SFTEEDQDIAN LLMLAN PN SISRVSD RFECSS
Sbjct: 121 VNYRRPVSASPNFSPNV--EHSSNSFTEEDQDIANSLLMLANGPNFSISRVSDSRFECSS 180

Query: 181 CKKVFGSHQALGGHRASHKNVRGCFAIAKSD-EETEDEITLLG----HERSINLENKMSL 240
           CKKVFGSHQALGGHRASHKNVRGCFA+A+SD EETEDEITL G    HERS NLEN+MS+
Sbjct: 181 CKKVFGSHQALGGHRASHKNVRGCFAMARSDEEETEDEITLFGDFGRHERSFNLENEMSM 240

Query: 241 MILGTTEHKCSSGHKRFHWENNAAA-EEGFVTFDLNMPAPLEDGSSSSSSSGLTLDLRLG 285
           MILGT  H+     KRF WENNAA  +E FV  DLN+PAPLED SSSS SS LTLDLRLG
Sbjct: 241 MILGTENHE-----KRFQWENNAATDQERFVNLDLNLPAPLEDDSSSSYSSSLTLDLRLG 291

[Close]
BLAST of Lsi11G012800 vs. NCBI nr
Match: gi|224104835|ref|XP_002313585.1| (zinc finger family protein [Populus trichocarpa])

HSP 1 Score: 249.2 bits (635), Expect = 8.5e-63
Identity = 145/276 (52.54%), Postives = 181/276 (65.58%), Query Frame = 1 

Query: 38  NRRRPRKKRSRIEK--DSTDTAVVASKAKYSKKPDPNAPKITPPCTECGKRFWSDKALFG 97
           + + PRKKR+R+ K   S   +   S+ KY  KPDP+APKIT PC+ECGK+FWS KALFG
Sbjct: 25  HHQNPRKKRTRLIKIEPSLLPSSTISRPKYYNKPDPSAPKITRPCSECGKKFWSWKALFG 84

Query: 98  HMRCHPERQWRGINPPLNFRRPISVSPFSPNIATDLE-ESSFTEEDQDIANCLLMLANSP 157
           HMRCHPERQWRGINPP N+RRP+S      +IA     E   T ED ++A+CLLMLA+S 
Sbjct: 85  HMRCHPERQWRGINPPPNYRRPVSPIDQPVSIANPTNWEDMMTAEDHEVASCLLMLADSD 144

Query: 158 NSISRVSDC-RFECSSCKKVFGSHQALGGHRASHKNVRGCFAIAKSDE-ETEDEITLLGH 217
            +     +C RFECSSC+KVFGSHQALGGHRASHKNV+GCFA+ +SD  E  ++    G 
Sbjct: 145 GAAMLEVNCTRFECSSCRKVFGSHQALGGHRASHKNVKGCFALTRSDGCEVVEDHGGSGD 204

Query: 218 ERSINLENKMSLMILGTTEHKCS------------SGHKRFHW----ENNAAAEEG--FV 277
            +    +N  +L++LG   HKCS             GH R HW    EN+++  +G  F+
Sbjct: 205 VKENVEDNSKALLVLG---HKCSICLRMFPSGQALGGHMRCHWEKGEENSSSMNQGLHFL 264

Query: 278 T------FDLNMPAPLEDGSSSSSSSGLTLDLRLGL 285
           T       DLN+PAP+ED SSSS SSGLTLDLRL L
Sbjct: 265 TAKEGCGLDLNLPAPMEDESSSSYSSGLTLDLRLCL 297

[Close]
BLAST of Lsi11G012800 vs. NCBI nr
Match: gi|731382619|ref|XP_010645909.1| (PREDICTED: zinc finger protein ZAT3 [Vitis vinifera])

HSP 1 Score: 246.5 bits (628), Expect = 5.5e-62
Identity = 158/339 (46.61%), Postives = 194/339 (57.23%), Query Frame = 1 

Query: 4   HINSVSIASSSSSPLDLTIPFELQMVETATSFDSNRRRPRKKRSRIEKDSTDTAVVAS-- 63
           +IN+  I  +S +P++     +    ++ +++    + PRKKRS++ +   D +VVAS  
Sbjct: 2   NINTDLIVHTSKNPVETFGNLDSSQ-QSGSNYQIQNQNPRKKRSKLIR--IDPSVVASSS 61

Query: 64  ---KAKYSKKPDPNAPKITPPCTECGKRFWSDKALFGHMRCHPERQWRGINPPLNFRRPI 123
              KAK  KK DP+APKIT PC+ECGK+FWS KALFGHMRCHPERQWRGINPP N+RR  
Sbjct: 62  GIVKAKSGKKADPSAPKITRPCSECGKKFWSWKALFGHMRCHPERQWRGINPPPNYRRSE 121

Query: 124 SVSPFSPNIATDLEESSFTEEDQDIANCLLMLANSPNSISRVSDC--------------- 183
                      +  +   +E+D ++A CLLMLAN    I R+S C               
Sbjct: 122 K--------GVEDADLGMSEDDHEVAACLLMLANGAGPIERISHCMLAYQADGADGLDAL 181

Query: 184 ----RFECSSCKKVFGSHQALGGHRASHKNVRGCFAIAKSDEETEDEITLLGHERS---- 243
               RFECSSCKKVFGSHQALGGHRASHKNV+GCFAI +++ E ED     GHER     
Sbjct: 182 GGGCRFECSSCKKVFGSHQALGGHRASHKNVKGCFAITRNEGEDEDRSG--GHERDGDGE 241

Query: 244 --INLENKMSLMILGTTEHKCS------------SGHKRFHWE----------------N 285
              NLE KM +M+LG   HKCS             GHKR HWE                N
Sbjct: 242 VKENLEEKM-MMVLG---HKCSICLRVFSSGQALGGHKRCHWERGDEPPSSLSSLPQGLN 301

[Close]
BLAST of Lsi11G012800 vs. NCBI nr
Match: gi|590683503|ref|XP_007041615.1| (C2H2-like zinc finger protein, putative [Theobroma cacao])

HSP 1 Score: 245.0 bits (624), Expect = 1.6e-61
Identity = 154/306 (50.33%), Postives = 179/306 (58.50%), Query Frame = 1 

Query: 32  ATSFDSNRRRPRKKRSRIEKDSTD----TAVVASKAKYSKKPDPNAPKITPPCTECGKRF 91
           A ++D N   PRKKRS++ K        +    S+ KY+KKPDP+APKIT PC+ECG++F
Sbjct: 32  AVNYDPN---PRKKRSKLMKSDAGQFPTSPRTVSRPKYTKKPDPSAPKITRPCSECGRKF 91

Query: 92  WSDKALFGHMRCHPERQWRGINPPLNFRRPISVSPFSPNIATDLEESSFTEEDQDIANCL 151
           WS KALFGHMRCHPERQWRGINPP N+RRP+     SP   T+  E   TEED + A  L
Sbjct: 92  WSWKALFGHMRCHPERQWRGINPPPNYRRPV-----SPVKQTNKVEVLMTEEDHETAEAL 151

Query: 152 LMLANSPNSISRVSDC----------------------RFECSSCKKVFGSHQALGGHRA 211
           LMLAN P   +  S+C                      RFECSSCKKVFGSHQALGGHRA
Sbjct: 152 LMLANGP--AANESECGTSSQQGVQENDALGANLGANFRFECSSCKKVFGSHQALGGHRA 211

Query: 212 SHKNVRGCFAIAKSDE-ETEDEITLLGHERSI---NLE-NKMSLMILGTTEHKCS----- 271
           SHKNV+GCFAI +SD  E ED+    G E  I   N+E N   +M+LG   HKCS     
Sbjct: 212 SHKNVKGCFAITRSDGCEVEDQ---SGDEDGIVKENVEDNSKMMMVLG---HKCSICLRV 271

Query: 272 -------SGHKRFHWEN----------NAAAEEGFVTFDLNMPAPLEDGSSSSSSSGLTL 285
                   GHKR HWE           N  A       DLN+PAP+E   SSS SSGL L
Sbjct: 272 FPTGQALGGHKRCHWEKGDETSPNQGLNLLAAREDCGLDLNLPAPVETDPSSSHSSGLAL 321

The following BLAST results are available for this feature:
BLAST of Lsi11G012800 vs. Swiss-Prot
Match NameE-valueIdentityDescription
ZAT3_ARATH8.8e-6049.43Zinc finger protein ZAT3 OS=Arabidopsis thaliana GN=ZAT3 PE=1 SV=1[more]
ZAT2_ARATH1.8e-4942.41Zinc finger protein ZAT2 OS=Arabidopsis thaliana GN=ZAT2 PE=1 SV=1[more]
ZAT4_ARATH1.4e-0931.79Zinc finger protein ZAT4 OS=Arabidopsis thaliana GN=ZAT4 PE=2 SV=1[more]
ZAT1_ARATH4.2e-0937.50Zinc finger protein ZAT1 OS=Arabidopsis thaliana GN=ZAT1 PE=2 SV=1[more]
ZAT10_ARATH3.9e-0731.15Zinc finger protein ZAT10 OS=Arabidopsis thaliana GN=ZAT10 PE=2 SV=1[more]
BLAST of Lsi11G012800 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K0V4_CUCSA1.9e-10169.44Uncharacterized protein OS=Cucumis sativus GN=Csa_7G024090 PE=4 SV=1[more]
B9HPY6_POPTR6.0e-6352.54Zinc finger family protein OS=Populus trichocarpa GN=POPTR_0009s16770g PE=4 SV=1[more]
A0A061DZD1_THECC1.1e-6150.33C2H2-like zinc finger protein, putative OS=Theobroma cacao GN=TCM_006454 PE=4 SV... [more]
A0A067KCV6_JATCU5.6e-6150.69Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18821 PE=4 SV=1[more]
A0A067FLN6_CITSI7.3e-6151.96Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g038358mg PE=4 SV=1[more]
BLAST of Lsi11G012800 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G35280.15.0e-6149.43 C2H2-like zinc finger protein[more]
AT2G17180.11.0e-5042.41 C2H2-like zinc finger protein[more]
AT1G02040.12.7e-1431.58 C2H2-type zinc finger family protein[more]
AT2G45120.18.1e-1131.79 C2H2-like zinc finger protein[more]
AT1G02030.12.3e-1037.50 C2H2-like zinc finger protein[more]
BLAST of Lsi11G012800 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659094517|ref|XP_008448104.1|7.2e-10272.20PREDICTED: zinc finger protein ZAT3 [Cucumis melo][more]
gi|778730079|ref|XP_011659693.1|2.7e-10169.44PREDICTED: zinc finger protein ZAT3 [Cucumis sativus][more]
gi|224104835|ref|XP_002313585.1|8.5e-6352.54zinc finger family protein [Populus trichocarpa][more]
gi|731382619|ref|XP_010645909.1|5.5e-6246.61PREDICTED: zinc finger protein ZAT3 [Vitis vinifera][more]
gi|590683503|ref|XP_007041615.1|1.6e-6150.33C2H2-like zinc finger protein, putative [Theobroma cacao][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0046872metal ion binding
Vocabulary: INTERPRO
TermDefinition
IPR015880Zinc finger, C2H2-like
IPR013087Znf_C2H2_type
IPR007087Zinc finger, C2H2
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0048235 pollen sperm cell differentiation
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0008150 biological_process
biological_process GO:0009987 cellular process
cellular_component GO:0005575 cellular_component
cellular_component GO:0005634 nucleus
molecular_function GO:0003677 DNA binding
molecular_function GO:0046872 metal ion binding
molecular_function GO:0003676 nucleic acid binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi11G012800.1Lsi11G012800.1mRNA


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007087Zinc finger, C2H2PFAMPF13912zf-C2H2_6coord: 80..102
score: 8.0E-7coord: 164..188
score: 8.4
IPR007087Zinc finger, C2H2PROSITEPS00028ZINC_FINGER_C2H2_1coord: 167..187
score: -coord: 80..100
scor
IPR007087Zinc finger, C2H2PROFILEPS50157ZINC_FINGER_C2H2_2coord: 165..192
score: 10.159coord: 78..105
score: 9
IPR013087Zinc finger C2H2-type/integrase DNA-binding domainGENE3DG3DSA:3.30.160.60coord: 80..100
score: 4.
IPR015880Zinc finger, C2H2-likeSMARTSM00355c2h2final6coord: 78..100
score: 0.21coord: 165..187
score:
NoneNo IPR availablePANTHERPTHR26374FAMILY NOT NAMEDcoord: 217..280
score: 9.1E-49coord: 32..113
score: 9.1E-49coord: 137..198
score: 9.1
NoneNo IPR availableunknownSSF57667beta-beta-alpha zinc fingerscoord: 79..100
score: 4.77E-8coord: 160..187
score: 4.7

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Lsi11G012800Csa6G118360Cucumber (Chinese Long) v2culsiB428
Lsi11G012800Csa7G024090Cucumber (Chinese Long) v2culsiB494
Lsi11G012800CSPI07G01690Wild cucumber (PI 183967)cpilsiB506
Lsi11G012800CSPI06G09700Wild cucumber (PI 183967)cpilsiB432
Lsi11G012800Cucsa.099630Cucumber (Gy14) v1cgylsiB122
Lsi11G012800Cucsa.119850Cucumber (Gy14) v1cgylsiB178
Lsi11G012800CmaCh19G007930Cucurbita maxima (Rimu)cmalsiB472
Lsi11G012800CmaCh11G013360Cucurbita maxima (Rimu)cmalsiB100
Lsi11G012800CmoCh20G007130Cucurbita moschata (Rifu)cmolsiB498
Lsi11G012800CmoCh19G008140Cucurbita moschata (Rifu)cmolsiB457
Lsi11G012800Cla015751Watermelon (97103) v1lsiwmB106
Lsi11G012800MELO3C013258Melon (DHL92) v3.5.1lsimeB096
Lsi11G012800ClCG02G003500Watermelon (Charleston Gray)lsiwcgB097
Lsi11G012800MELO3C013258.2Melon (DHL92) v3.6.1lsimedB102
Lsi11G012800Cla97C02G030100Watermelon (97103) v2lsiwmbB086
Lsi11G012800Bhi05G001363Wax gourdlsiwgoB118
Lsi11G012800Cp4.1LG16g03520Cucurbita pepo (Zucchini)cpelsiB232
Lsi11G012800Cp4.1LG15g06370Cucurbita pepo (Zucchini)cpelsiB199
Lsi11G012800CsGy6G009820Cucumber (Gy14) v2cgyblsiB393
Lsi11G012800CsGy7G001630Cucumber (Gy14) v2cgyblsiB462
Lsi11G012800Carg04091Silver-seed gourdcarlsiB174
Lsi11G012800Carg16136Silver-seed gourdcarlsiB316
Lsi11G012800CsaV3_6G010150Cucumber (Chinese Long) v3cuclsiB455
Lsi11G012800CsaV3_7G001810Cucumber (Chinese Long) v3cuclsiB529
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi11G012800Silver-seed gourdcarlsiB779
Lsi11G012800Silver-seed gourdcarlsiB974
Lsi11G012800Bottle gourd (USVL1VR-Ls)lsilsiB054
Lsi11G012800Cucurbita maxima (Rimu)cmalsiB515
Lsi11G012800Cucurbita maxima (Rimu)cmalsiB558
Lsi11G012800Cucurbita moschata (Rifu)cmolsiB080
Lsi11G012800Cucurbita moschata (Rifu)cmolsiB542
Lsi11G012800Cucurbita pepo (Zucchini)cpelsiB526
Lsi11G012800Cucurbita pepo (Zucchini)cpelsiB607