Lsi11G011380 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi11G011380
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionUnknown protein
Locationchr11 : 19904062 .. 19905872 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AGGAGAAATTTCAACTTTGTTGACGCTTCATCATCGGGTTCTCATTTGCTTCCACCGGCCATTGGTTCATCTCAAACTTCTCTCCTCCCTGAGACGAAGACTGATAGCGACGGCTCCGTCGTGAGTTACCGGAATCTTCGGCCGCTCCGGCCACCCCGCATTCTCCTTCTGCTTCACGACTTACGGTCGCCGGCCGGCGCTGATTCGCGGTTGTTGTGTTACTGTTTCATCTATGTCCGTTCCTCGGCATTCATTTCCATCTTTCTACGTTCGGTACGTTTACTTTCACCTGGTTGCTTTTTTTCTTTTTTAATAATCCTTTTCCTCTTTCTCTTTAATCGTCACTTGGATGCTTTATTCCACTCGTAAAGCTTCATCGTCTTCTCCAATTTACTCTGAAGCTACGCCTTGAATCCTTCTCTCTGCCATTGCGGTTTTGGATTGAAGTTCATGTAATCATGTTTGCGTAGCTGATTTTATCATATCTATGATCTTTCCTCTGGGGTCGCGGAGTGTCGTTTCATTCTCGATGATTTAATTGTCCAGTGGTTCCTCGTAATTTGTTACTTGTGAGGTTTTCGTTGGAAATTGCTGCATTCGAAGTTTGCTTTGAGTCGAAGTAAAACAATGAGTTCCAGTGTGCAATTATTTTCGAGATAGGATTTTAATAATCTTTCTTAACTGAGGATTTGATGAAGATGAGCTAACCGTTAGAATTGTATATTAGCGCCGTTGCGTAGAACTTCTAACCGCGCGATATTCCGCGTCCATTTTGATACGCACATTGTGAATGGTATAAATTTCGGGTTCTTTCTTTTCAGTTTTGGAACATTATTTAATATATTGTGGTCGTTTTCTTAAAGTGCACGAGGCTTGAAGACGACGAAAAGCGCAGCAGAGTAGCAGAGGCTTCGGATCAGACCGAACGGCAGAAAAGAAGAAGGGGAAAAGGGAAATTCTAAAGACGACGGCGTTTGGGGGATCGCATCTATTTCTCGAGCAAGTAAGCCATTGCAATCGACATCTGAACCGCATCGCTCTACCGAATGGGTACATCGTTTTCGGAAACGGTTTTCTGAAAGGACAGACGGATTCGACAGTATGTTTTTTCTTTTTTTTGTTCCTCGTCTTCTTTATTTTAATTTCAGAATTCACAGTACCAATAACTTCTGACCACATCTTATCGTGTAGAGCGATAATGAGAATACAAAGAAAATAACGTTCTGATGGTCGGATGTCAATGCTTACCGTTTTCAAAGTCCCCGAATTTGTCCACAAGCTTTGTGGGTCTCCACTATGGGGAAGGTTTCTGTCTTACATGACATTTGTGATTTTCTTGGGGGAAATAGCCCCCACAAAAAAAAGGGTTTAAAAAGGGATGCGTAGAACTGAAGGTTAGGCTAGATTGCTAAAGGCTTAACCATGATATGGAAATTATCATTGATATGCTTTCTAACTTTTATCATTTTGCGGGTGGTGGGTAAATACCCATGATTAGCTTGTAGTTGCAGTTATTAATATTCTTTCTACAGTTGGTTGGGTGAGGGGGTTGGTAAGATCAGAAGACACTCATGGTTTGCTGGATGGTTACGACATGGAGTAATTAGCATTTGTTTAGCATATTAGTATTATTTTATGCAGGTAATTTCAGTCATTAAGGGCTTATAAGCTTTCTTTACTTGTTCAAGGAACTAATTTAATTGAAATCTAAACAGTGTCCTGTAAATGTGCGAAGCATGAGCACAATGACTTGGGTATCTGTTCTTGTTTCATCTTCGAGAGTACTACAATTATGGATTGATATAGACTGA

mRNA sequence

AGGAGAAATTTCAACTTTGTTGACGCTTCATCATCGGGTTCTCATTTGCTTCCACCGGCCATTGGTTCATCTCAAACTTCTCTCCTCCCTGAGACGAAGACTGATAGCGACGGCTCCGTCGTGAGTTACCGGAATCTTCGGCCGCTCCGGCCACCCCGCATTCTCCTTCTGCTTCACGACTTACGGTCGCCGGCCGGCGCTGATTCGCGGTTGTTGTGTTACTGTTTCATCTATGTCCGTTCCTCGGCATTCATTTCCATCTTTCTACGTTCGCTTCATCGTCTTCTCCAATTTACTCTGAAGCTACGCCTTGAATCCTTCTCTCTGCCATTGCGGTTTTGGATTGAAGTTCATGTAATCATACGACGAAAAGCGCAGCAGAGTAGCAGAGGCTTCGGATCAGACCGAACGGCAGAAAAGAAGAAGGGGAAAAGGGAAATTCTAAAGACGACGGCGTTTGGGGGATCGCATCTATTTCTCGAGCAAGTAAGCCATTGCAATCGACATCTGAACCGCATCGCTCTACCGAATGGGTACATCGTTTTCGGAAACGGTTTTCTGAAAGGACAGACGGATTCGACATGTCCTGTAAATGTGCGAAGCATGAGCACAATGACTTGGGTATCTGTTCTTGTTTCATCTTCGAGAGTACTACAATTATGGATTGATATAGACTGA

Coding sequence (CDS)

AGGAGAAATTTCAACTTTGTTGACGCTTCATCATCGGGTTCTCATTTGCTTCCACCGGCCATTGGTTCATCTCAAACTTCTCTCCTCCCTGAGACGAAGACTGATAGCGACGGCTCCGTCGTGAGTTACCGGAATCTTCGGCCGCTCCGGCCACCCCGCATTCTCCTTCTGCTTCACGACTTACGGTCGCCGGCCGGCGCTGATTCGCGGTTGTTGTGTTACTGTTTCATCTATGTCCGTTCCTCGGCATTCATTTCCATCTTTCTACGTTCGCTTCATCGTCTTCTCCAATTTACTCTGAAGCTACGCCTTGAATCCTTCTCTCTGCCATTGCGGTTTTGGATTGAAGTTCATGTAATCATACGACGAAAAGCGCAGCAGAGTAGCAGAGGCTTCGGATCAGACCGAACGGCAGAAAAGAAGAAGGGGAAAAGGGAAATTCTAAAGACGACGGCGTTTGGGGGATCGCATCTATTTCTCGAGCAAGTAAGCCATTGCAATCGACATCTGAACCGCATCGCTCTACCGAATGGGTACATCGTTTTCGGAAACGGTTTTCTGAAAGGACAGACGGATTCGACATGTCCTGTAAATGTGCGAAGCATGAGCACAATGACTTGGGTATCTGTTCTTGTTTCATCTTCGAGAGTACTACAATTATGGATTGATATAGACTGA

Protein sequence

RRNFNFVDASSSGSHLLPPAIGSSQTSLLPETKTDSDGSVVSYRNLRPLRPPRILLLLHDLRSPAGADSRLLCYCFIYVRSSAFISIFLRSLHRLLQFTLKLRLESFSLPLRFWIEVHVIIRRKAQQSSRGFGSDRTAEKKKGKREILKTTAFGGSHLFLEQVSHCNRHLNRIALPNGYIVFGNGFLKGQTDSTCPVNVRSMSTMTWVSVLVSSSRVLQLWIDID
Homology
[Close]
BLAST of Lsi11G011380 vs. TrEMBL
Match: A0A0A0K5R0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G006260 PE=3 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 1.3e-15
Identity = 77/210 (36.67%), Postives = 100/210 (47.62%), Query Frame = 1 

Query: 1   RRNFNFVDASSSGSHLLPPAIGSSQTSLLPETKTDSDGSVVSYRNLRPLRPPRILLLLHD 60
           RRNFNFVDA SSGSH LPPAI SSQ SLLP+  T SDGS VSYRNL     P        
Sbjct: 14  RRNFNFVDAPSSGSHFLPPAIASSQISLLPKNNTHSDGSAVSYRNLGRYGHP-------- 73

Query: 61  LRSPAGADSRLLCYCFIYVRSSAFISIFLRSLHRLLQFTLKLRLESFSLPLRFWIEVHVI 120
             SP+ +   +   CF  V     +  +LR       F +   L +F+    F I V   
Sbjct: 74  -HSPSASRFTVADRCFFAV---VILLFYLRPF-----FGIHFHLSTFA---DFIISVIFP 133

Query: 121 IRRKAQQSSR-GFGSDRTAEKKKGKREILKTTAFGGSHLFLEQVSHCNRHLNRIALPN-- 180
               +Q + R     +   +KKKG++   +          +  +SH ++ L  I+ P+  
Sbjct: 134 FGGISQSTQRLRIRPNGREKKKKGEKGNFRNDGVWR----ITSISHTSKLLQSISEPHRS 193

Query: 181 --GYIVFGNGFLKGQTDSTCPVNVRSMSTM 206
                 F   F +   D TCPVNVRSMSTM
Sbjct: 194 TEWMYCFQKRFSERTDDLTCPVNVRSMSTM 199

[Close]
BLAST of Lsi11G011380 vs. NCBI nr
Match: gi|700187943|gb|KGN43176.1| (hypothetical protein Csa_7G006260 [Cucumis sativus])

HSP 1 Score: 91.7 bits (226), Expect = 1.8e-15
Identity = 77/210 (36.67%), Postives = 100/210 (47.62%), Query Frame = 1 

Query: 1   RRNFNFVDASSSGSHLLPPAIGSSQTSLLPETKTDSDGSVVSYRNLRPLRPPRILLLLHD 60
           RRNFNFVDA SSGSH LPPAI SSQ SLLP+  T SDGS VSYRNL     P        
Sbjct: 14  RRNFNFVDAPSSGSHFLPPAIASSQISLLPKNNTHSDGSAVSYRNLGRYGHP-------- 73

Query: 61  LRSPAGADSRLLCYCFIYVRSSAFISIFLRSLHRLLQFTLKLRLESFSLPLRFWIEVHVI 120
             SP+ +   +   CF  V     +  +LR       F +   L +F+    F I V   
Sbjct: 74  -HSPSASRFTVADRCFFAV---VILLFYLRPF-----FGIHFHLSTFA---DFIISVIFP 133

Query: 121 IRRKAQQSSR-GFGSDRTAEKKKGKREILKTTAFGGSHLFLEQVSHCNRHLNRIALPN-- 180
               +Q + R     +   +KKKG++   +          +  +SH ++ L  I+ P+  
Sbjct: 134 FGGISQSTQRLRIRPNGREKKKKGEKGNFRNDGVWR----ITSISHTSKLLQSISEPHRS 193

Query: 181 --GYIVFGNGFLKGQTDSTCPVNVRSMSTM 206
                 F   F +   D TCPVNVRSMSTM
Sbjct: 194 TEWMYCFQKRFSERTDDLTCPVNVRSMSTM 199

The following BLAST results are available for this feature:
BLAST of Lsi11G011380 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lsi11G011380 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K5R0_CUCSA1.3e-1536.67Uncharacterized protein OS=Cucumis sativus GN=Csa_7G006260 PE=3 SV=1[more]
BLAST of Lsi11G011380 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Lsi11G011380 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700187943|gb|KGN43176.1|1.8e-1536.67hypothetical protein Csa_7G006260 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007018 microtubule-based movement
biological_process GO:0008150 biological_process
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005874 microtubule
cellular_component GO:0045298 tubulin complex
cellular_component GO:0005575 cellular_component
molecular_function GO:0005524 ATP binding
molecular_function GO:0008017 microtubule binding
molecular_function GO:0003777 microtubule motor activity
molecular_function GO:0005488 binding
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi11G011380.1Lsi11G011380.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Lsi11G011380CmoCh19G007030Cucurbita moschata (Rifu)cmolsiB457
Lsi11G011380Cla97C02G031540Watermelon (97103) v2lsiwmbB086
Lsi11G011380Carg19386Silver-seed gourdcarlsiB290
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi11G011380Silver-seed gourdcarlsiB891
Lsi11G011380Cucumber (Chinese Long) v3cuclsiB109
Lsi11G011380Cucumber (Chinese Long) v3cuclsiB112
Lsi11G011380Cucumber (Chinese Long) v3cuclsiB529
Lsi11G011380Watermelon (97103) v2lsiwmbB080
Lsi11G011380Watermelon (97103) v2lsiwmbB104
Lsi11G011380Wax gourdlsiwgoB118
Lsi11G011380Wax gourdlsiwgoB123
Lsi11G011380Wax gourdlsiwgoB128
Lsi11G011380Cucumber (Gy14) v1cgylsiB258
Lsi11G011380Bottle gourd (USVL1VR-Ls)lsilsiB021
Lsi11G011380Bottle gourd (USVL1VR-Ls)lsilsiB063
Lsi11G011380Cucumber (Gy14) v1cgylsiB146
Lsi11G011380Cucumber (Gy14) v1cgylsiB610
Lsi11G011380Cucurbita maxima (Rimu)cmalsiB103
Lsi11G011380Cucurbita maxima (Rimu)cmalsiB162
Lsi11G011380Cucurbita maxima (Rimu)cmalsiB472
Lsi11G011380Cucurbita maxima (Rimu)cmalsiB514
Lsi11G011380Cucurbita maxima (Rimu)cmalsiB562
Lsi11G011380Cucurbita maxima (Rimu)cmalsiB711
Lsi11G011380Cucurbita moschata (Rifu)cmolsiB090
Lsi11G011380Cucurbita moschata (Rifu)cmolsiB151
Lsi11G011380Cucurbita moschata (Rifu)cmolsiB500
Lsi11G011380Cucurbita moschata (Rifu)cmolsiB545
Lsi11G011380Cucurbita moschata (Rifu)cmolsiB705
Lsi11G011380Cucurbita pepo (Zucchini)cpelsiB199
Lsi11G011380Cucurbita pepo (Zucchini)cpelsiB231
Lsi11G011380Cucurbita pepo (Zucchini)cpelsiB532
Lsi11G011380Cucurbita pepo (Zucchini)cpelsiB605
Lsi11G011380Cucurbita pepo (Zucchini)cpelsiB662
Lsi11G011380Melon (DHL92) v3.5.1lsimeB086
Lsi11G011380Wild cucumber (PI 183967)cpilsiB097
Lsi11G011380Wild cucumber (PI 183967)cpilsiB101
Lsi11G011380Wild cucumber (PI 183967)cpilsiB506
Lsi11G011380Cucumber (Chinese Long) v2culsiB103
Lsi11G011380Cucumber (Chinese Long) v2culsiB104
Lsi11G011380Cucumber (Chinese Long) v2culsiB494
Lsi11G011380Melon (DHL92) v3.5.1lsimeB096
Lsi11G011380Melon (DHL92) v3.5.1lsimeB108
Lsi11G011380Watermelon (Charleston Gray)lsiwcgB085
Lsi11G011380Watermelon (Charleston Gray)lsiwcgB097
Lsi11G011380Watermelon (Charleston Gray)lsiwcgB116
Lsi11G011380Watermelon (97103) v1lsiwmB091
Lsi11G011380Watermelon (97103) v1lsiwmB106
Lsi11G011380Watermelon (97103) v1lsiwmB111
Lsi11G011380Cucumber (Gy14) v2cgyblsiB090
Lsi11G011380Cucumber (Gy14) v2cgyblsiB093
Lsi11G011380Cucumber (Gy14) v2cgyblsiB462
Lsi11G011380Melon (DHL92) v3.6.1lsimedB090
Lsi11G011380Melon (DHL92) v3.6.1lsimedB102
Lsi11G011380Melon (DHL92) v3.6.1lsimedB116