CmoCh19G007030 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh19G007030
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUnknown protein
LocationCmo_Chr19 : 7416319 .. 7418362 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACAGGCACAATTCTGACTAGTTTGGATTCGAGCGAGAGCACGAACAGGAGAGGCAAGAACATCTTGATGGTTCCATGGACAGTGCAAGACATTGGTCGGAGTAGGACCTAGCCCCTCTTCTAGTAGATACGTTTTAAAATAATGAGACTGATGACGATACATAACGGACAAAAACAGACAATATCTACTAATTGTGAACTTTGGATATTACCTTTAGAGACTAAATTTATAATTTTACAAGTTACTGAGGAACAACAATAAATTAGGTTTTAGAGAATTTAATTCCCGTTCTCAACCCATGACCAATACGAGCTCGAGGTTTCCTTCATAACTCCCGAAACTTCTTCGTAGTGGCTCCATTCCATGCCTCATTTCATAGAGAACCTATGTGTTTAATATTAATAAAATATTAAAAATAGTCTATACTTATGGTTTAATGTGTATTTTATTGTATGAAAGTTATTTTATTATACAAATTTTAACGGAGTAAATTTAAAATTTACTGAAAAGGTAAAAGTTAATTTAGACGGTAAAAAATGAAAAAAGACAGATTTTTAACGAAAGTAAAGTGGGAGCTGCTGTCAGTATTTATTATTCGTTTGTCAGCTTTGGGAGGCTTCTCTTTCTTTGCCGCTCCAACAATTGGTTCCCCACAGATCTAACGGTCACAGGCAGGGACATAGGGAACACCGCTGCCACGTGGCGCCATATGTGCCCACCTCTCCTTTTTAATTTTTTCTATCCAGCTTTTTATTTTTATTTTTATTTTTATTTTCATCACGTGATACTACCAGCTTTTAAATTACAAACAGAATAAATAAATAAATAAAGTTAAATTACAAATTTGGTCAATTAATTTTAAAGTTTTGCTATATTTGTTTTGTAGACTTTTAATTATTTAATATTTTACTTTTATGTCTGAAAAATTATTAGGATTTTTCTTTTGTTTTATTTAGTTATTTATAAGATTCAATTGTATGTGTAATACTTATTAAATACATAAATTAAAATTTATGATTAATATATTAAATAGTTTTTTAAATTTAAATATATTTTTATTGAAAATAGAAACTCTATTATTAAATTAATTCTATAAAAAAAATAATAAAGAAAGAGAAGGACGAAAGATAGAGAGGGTATTTTAGTCATTTCGCTCCACTCTAGTTTTCTTCTTGGAGGTGCGGTTGGAAGAGAAATCTCAACTTTGTTGACGCTCCATCATCGGATTCTCATTTGGTTCCACCGGCCACTGATTCATCTCAAATTTATCTTCTCCGTGAGACTGACACTGATAGCGACGGCTCGACCGTGATTTCCCGGAATCTGCGGCCTCTCTGGTCACCCGCATTCTCCTTCTTCTTCACGATTTATGGCCGCTGGCCGGTGCTGAGTCGCCGTTGTTGTGTTACTGTTTCATCTAGGTCCATTCCTCGGCTTTCATTTCCACATTTCTACGTTCGGTACGTTTGCTTTCACCTGATCGTTTTTTTTTTTTTGTTAAACATTTTCTTTCTCTCTTTGATTGTCACTTTGATGCTTTCTTCCACTCGTAAAGCTTCCTCGTCTTCTTCTATTTACTCTGAAGCTACGCCTTGAGTCCTTCTCGGATTTGGATTTAAGTTCATGCTATCATGTTTGCGTAGCTGATTTTATCATCTCGGTGATCTGTCCTCTCGGACGTATCTAACCGAGTATTGTTTCATTTTCGATGCTTTAATTGTTCAGCAGCTCCTTGTAATTTGTTACATGTGGAAAATGCTGCATTAGAAGTTTTCTTTGAGTCGAAGTAAATCAATGAGTTCAATTGCGACATAGAAGTTTAACAATCTTTGCTTAACTGAGATTTTGATTAAGATAAGCTAACCGTTAGAATTGAATATTTCTGCCATTGCGTAAAACGTCAATCCGCACCATATTCCGCGTGCATTTCGGTATGCACATTGTGATTATTATATATTTCGGGGGAGTTTTCAGTTTTGGAACGTGGTCGTTTTCTTATAGCGCACGAGGCTTTAAGACGACGAAAATCGCAGCAGAGTAG

mRNA sequence

ATGACAGGCACAATTCTGACTAGTTTGGATTCGAGCGAGAGCACGAACAGGAGAGGCAAGAACATCTTGATGTTTTCTTCTTGGAGGTGCGGTTGGAAGAGAAATCTCAACTTTGTTGACGCTCCATCATCGGATTCTCATTTGGTTCCACCGGCCACTGATTCATCTCAAATTTATCTTCTCCGTGAGACTGACACTGATAGCGACGGCTCGACCGTGATTTCCCGGAATCTGCGGCCTCTCTGGTCACCCGCATTCTCCTTCTTCTTCACGATTTATGGCCGCTGGCCGGTGCTGAGTCGCCGTTGTTGTGTTACTGTTTCATCTAGGTCCATTCCTCGGCTTTCATTTCCACATTTCTACGTTCGCGCACGAGGCTTTAAGACGACGAAAATCGCAGCAGAGTAG

Coding sequence (CDS)

ATGACAGGCACAATTCTGACTAGTTTGGATTCGAGCGAGAGCACGAACAGGAGAGGCAAGAACATCTTGATGTTTTCTTCTTGGAGGTGCGGTTGGAAGAGAAATCTCAACTTTGTTGACGCTCCATCATCGGATTCTCATTTGGTTCCACCGGCCACTGATTCATCTCAAATTTATCTTCTCCGTGAGACTGACACTGATAGCGACGGCTCGACCGTGATTTCCCGGAATCTGCGGCCTCTCTGGTCACCCGCATTCTCCTTCTTCTTCACGATTTATGGCCGCTGGCCGGTGCTGAGTCGCCGTTGTTGTGTTACTGTTTCATCTAGGTCCATTCCTCGGCTTTCATTTCCACATTTCTACGTTCGCGCACGAGGCTTTAAGACGACGAAAATCGCAGCAGAGTAG
Homology
[Close]
BLAST of CmoCh19G007030 vs. TrEMBL
Match: A0A0A0K5R0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G006260 PE=3 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 6.2e-10
Identity = 34/50 (68.00%), Postives = 38/50 (76.00%), Query Frame = 1 

Query: 29 RCGWKRNLNFVDAPSSDSHLVPPATDSSQIYLLRETDTDSDGSTVISRNL 79
          RCGW+RN NFVDAPSS SH +PPA  SSQI LL + +T SDGS V  RNL
Sbjct: 10 RCGWRRNFNFVDAPSSGSHFLPPAIASSQISLLPKNNTHSDGSAVSYRNL 59

[Close]
BLAST of CmoCh19G007030 vs. NCBI nr
Match: gi|700187943|gb|KGN43176.1| (hypothetical protein Csa_7G006260 [Cucumis sativus])

HSP 1 Score: 72.0 bits (175), Expect = 8.9e-10
Identity = 34/50 (68.00%), Postives = 38/50 (76.00%), Query Frame = 1 

Query: 29 RCGWKRNLNFVDAPSSDSHLVPPATDSSQIYLLRETDTDSDGSTVISRNL 79
          RCGW+RN NFVDAPSS SH +PPA  SSQI LL + +T SDGS V  RNL
Sbjct: 10 RCGWRRNFNFVDAPSSGSHFLPPAIASSQISLLPKNNTHSDGSAVSYRNL 59

The following BLAST results are available for this feature:
BLAST of CmoCh19G007030 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh19G007030 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K5R0_CUCSA6.2e-1068.00Uncharacterized protein OS=Cucumis sativus GN=Csa_7G006260 PE=3 SV=1[more]
BLAST of CmoCh19G007030 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh19G007030 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700187943|gb|KGN43176.1|8.9e-1068.00hypothetical protein Csa_7G006260 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005488 binding
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh19G007030.1CmoCh19G007030.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh19G007030Lsi11G011380Bottle gourd (USVL1VR-Ls)cmolsiB457
CmoCh19G007030Carg19386Silver-seed gourdcarcmoB0433
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh19G007030Cucumber (Chinese Long) v3cmocucB0590
CmoCh19G007030Cucumber (Chinese Long) v3cmocucB0594
CmoCh19G007030Cucumber (Chinese Long) v3cmocucB0622
CmoCh19G007030Watermelon (97103) v2cmowmbB506
CmoCh19G007030Watermelon (97103) v2cmowmbB512
CmoCh19G007030Wax gourdcmowgoB0653
CmoCh19G007030Wax gourdcmowgoB0662
CmoCh19G007030Wax gourdcmowgoB0665
CmoCh19G007030Cucurbita moschata (Rifu)cmocmoB111
CmoCh19G007030Cucurbita moschata (Rifu)cmocmoB382
CmoCh19G007030Cucurbita moschata (Rifu)cmocmoB388
CmoCh19G007030Cucumber (Gy14) v1cgycmoB0251
CmoCh19G007030Cucumber (Gy14) v1cgycmoB1037
CmoCh19G007030Cucurbita maxima (Rimu)cmacmoB146
CmoCh19G007030Cucurbita maxima (Rimu)cmacmoB508
CmoCh19G007030Cucurbita maxima (Rimu)cmacmoB548
CmoCh19G007030Cucurbita maxima (Rimu)cmacmoB599
CmoCh19G007030Wild cucumber (PI 183967)cmocpiB500
CmoCh19G007030Wild cucumber (PI 183967)cmocpiB524
CmoCh19G007030Cucumber (Chinese Long) v2cmocuB495
CmoCh19G007030Cucumber (Chinese Long) v2cmocuB518
CmoCh19G007030Melon (DHL92) v3.5.1cmomeB453
CmoCh19G007030Watermelon (Charleston Gray)cmowcgB455
CmoCh19G007030Watermelon (Charleston Gray)cmowcgB459
CmoCh19G007030Watermelon (97103) v1cmowmB496
CmoCh19G007030Watermelon (97103) v1cmowmB499
CmoCh19G007030Cucurbita pepo (Zucchini)cmocpeB481
CmoCh19G007030Cucurbita pepo (Zucchini)cmocpeB484
CmoCh19G007030Cucurbita pepo (Zucchini)cmocpeB495
CmoCh19G007030Cucurbita pepo (Zucchini)cmocpeB499
CmoCh19G007030Bottle gourd (USVL1VR-Ls)cmolsiB451
CmoCh19G007030Bottle gourd (USVL1VR-Ls)cmolsiB483
CmoCh19G007030Cucumber (Gy14) v2cgybcmoB202
CmoCh19G007030Cucumber (Gy14) v2cgybcmoB205
CmoCh19G007030Cucumber (Gy14) v2cgybcmoB927
CmoCh19G007030Melon (DHL92) v3.6.1cmomedB522
CmoCh19G007030Melon (DHL92) v3.6.1cmomedB527
CmoCh19G007030Silver-seed gourdcarcmoB1316