Carg19386 (gene) Silver-seed gourd

Overview
NameCarg19386
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionUnknown protein
LocationCucurbita_argyrosperma_scaffold_096 : 291498 .. 293294 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAGATAGAAAGGGTATTTTAGTCATTTCGCTCAACTCTAGTTTTCTTCTTGGAGGTGCGGTTGGAGGAGAAATCTCAACTTTGACGCTCCATCATCGGATTCTCATTTGGTTCCACCGGCCACTGATTCATCTCAAATTTATCCTCTCCGTGAGACTGACACTGATAGCGACGGCTCCACCGTGAGTTCCCGGAATCTGCGGCCTCTCTGGTCACCCGCATTCTCCTTCTTCTTCACGATTTATGGCCGCTGGCCGGTGCTGAGTCGCCGTTGTTGTGTTACTGTTTCATCTAGGTCCATTCCTCGGCTTTCATTTCCACATTTCTACGTTCGGTACGTTTACTTTCACCTGATCGTTTTTTTTTTTTTTGTTAAACATTTTCTTTCTCTCTTTGATTGTCACTTTGATGCTTTCTTCCACTCGTAAAGCTTCATCGTCTTCTTCTGTTTACTCTGAAGCTACGCCTTGAGTCCTTCTCGGATTTGGATTTAAGTTCATGCTATCATGTTTGCGTAGCTGATTTTATCATCTCGGTGATCTGTCCTCTCGGACGTATCTAACCGAGTATTGTTTCATTTTCGATGCTTTAATTGTTCAGCAGCTCCTTGTAATTTGTTACATGTGGAAAATGCTGCATTAGAAGTTTTCTTTGAGTCGAAGTAAATCAATGAGTTCAATTGCGACATAGAAGTTTAACAATCTTTGCTTAACTGAGATTTTGATTAAGATAAGCTAACCGTAAGAATTGAATATTTCTGCCATTGCGTAAAACGTCTATCCGCGCCATATTCCGCGTGCATTTCGGTATGCACATTGTGATTATTATATATTTCGGGGGAGTTTTCAGTTTTGGAACGTGGTCGTTTTCTTATAGCGCACGAGGCTTTAAGACGACGAAAATCGCAGCAGAGTAGCAGAGGATTCGGATCAGACCAAACGGCAGAAACCAAAGGAAAAACGAGATATTAAAAACGACGGCGTTTGGAGGATCCTTCATTTCTCGAGCAAGTTGGCCATTGCATTCGATATCTGAACCGCATCGCTGTATCGAACGGACGCATCGTTTTCGGGAGCGGTTTTCTGAAAGGACAGACGATTCGACAGTATGATTTTTTTTTGTTCCTTGTCTTCTTGATTTTTATTTCGGAATTCACAGTTCTAGTAACATCTGACCAAACCTTATCGTGAAGAGCGATAAGGAGAATTCAATGACAATAACATTCTGATGGTTGGATGACAATGCTTACCCTGTTCAAATTCCTCGAATTTGTCCGTAAGCTTTGTGGGTCTTCTCTATGAGGGAGGTTTCTGTCTTACATGAAATCTGTGAATTTTTTTGGGGGAAATACCCCGCAAGAGAAAAGGGGGTTTAAAGGGATGCGTAGAATTGAAGGTCAAGCTAGATTGCCATAGGCTTAACCATAATATGGCAATTATCATAAATCTACTTTCTAGCTTTACATCATTTTTCGGGTGACGGGTAAATACCCATGATTAGCTTGTAGCTGAAGTTATTAATTCATAATCTTTCTACTATTGGTTGGCTGAGGGGGTTGGTCAGATCAGAATACACTCATGGCTTGAGTAATTAGCATTTATTTAGCATGTTAGTAGTATTTTATGCAGGAAATTGTTGTCATTAAAGGCTTATAAGCTCTCCTTTATAAATGTCAACAGTCCTGAAAATGTGCGAAGCACGAGCCCAATGACTTGGGTATCTACAGTTATGGATTGATATAGACTGAATCAAGGTGGTGGCCTGTTGGGCTGGGAGAAGGTTTGGCTACATTGA

mRNA sequence

ATGAAAGATAGAAAGGGTATTTTATTTTCTTCTTGGAGGTGCGGTTGGAGGAGAAATCTCAACTTTGACGCTCCATCATCGGATTCTCATTTGGTTCCACCGGCCACTGATTCATCTCAAATTTATCCTCTCCGTGAGACTGACACTGATAGCGACGGCTCCACCGTGAGTTCCCGGAATCTGCGGCCTCTCTGGTCACCCGCATTCTCCTTCTTCTTCACGATTTATGGCCGCTGGCCGGTGCTGAGTCGCCGTTGTTGTGTTACTGTTTCATCTAGGTCCATTCCTCGGCTTTCATTTCCACATTTCTACGTTCGACTGAATCAAGGTGGTGGCCTGTTGGGCTGGGAGAAGGTTTGGCTACATTGA

Coding sequence (CDS)

ATGAAAGATAGAAAGGGTATTTTATTTTCTTCTTGGAGGTGCGGTTGGAGGAGAAATCTCAACTTTGACGCTCCATCATCGGATTCTCATTTGGTTCCACCGGCCACTGATTCATCTCAAATTTATCCTCTCCGTGAGACTGACACTGATAGCGACGGCTCCACCGTGAGTTCCCGGAATCTGCGGCCTCTCTGGTCACCCGCATTCTCCTTCTTCTTCACGATTTATGGCCGCTGGCCGGTGCTGAGTCGCCGTTGTTGTGTTACTGTTTCATCTAGGTCCATTCCTCGGCTTTCATTTCCACATTTCTACGTTCGACTGAATCAAGGTGGTGGCCTGTTGGGCTGGGAGAAGGTTTGGCTACATTGA

Protein sequence

MKDRKGILFSSWRCGWRRNLNFDAPSSDSHLVPPATDSSQIYPLRETDTDSDGSTVSSRNLRPLWSPAFSFFFTIYGRWPVLSRRCCVTVSSRSIPRLSFPHFYVRLNQGGGLLGWEKVWLH
Homology
[Close]
BLAST of Carg19386 vs. NCBI nr
Match: KGN43176.1 (hypothetical protein Csa_7G006260 [Cucumis sativus])

HSP 1 Score: 65.9 bits (159), Expect = 1.1e-07
Identity = 34/50 (68.00%), Postives = 37/50 (74.00%), Query Frame = 0 

Query: 13 RCGWRRNLNF-DAPSSDSHLVPPATDSSQIYPLRETDTDSDGSTVSSRNL 62
          RCGWRRN NF DAPSS SH +PPA  SSQI  L + +T SDGS VS RNL
Sbjct: 10 RCGWRRNFNFVDAPSSGSHFLPPAIASSQISLLPKNNTHSDGSAVSYRNL 59

[Close]
BLAST of Carg19386 vs. TrEMBL
Match: tr|A0A0A0K5R0|A0A0A0K5R0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G006260 PE=3 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 7.4e-08
Identity = 34/50 (68.00%), Postives = 37/50 (74.00%), Query Frame = 0 

Query: 13 RCGWRRNLNF-DAPSSDSHLVPPATDSSQIYPLRETDTDSDGSTVSSRNL 62
          RCGWRRN NF DAPSS SH +PPA  SSQI  L + +T SDGS VS RNL
Sbjct: 10 RCGWRRNFNFVDAPSSGSHFLPPAIASSQISLLPKNNTHSDGSAVSYRNL 59

The following BLAST results are available for this feature:
BLAST of Carg19386 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN43176.11.1e-0768.00hypothetical protein Csa_7G006260 [Cucumis sativus][more]
BLAST of Carg19386 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Carg19386 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Carg19386 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0K5R0|A0A0A0K5R0_CUCSA7.4e-0868.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G006260 PE=3 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg19386-RACarg19386-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 23..60

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg19386CmoCh19G007030Cucurbita moschata (Rifu)carcmoB0433
Carg19386Lsi11G011380Bottle gourd (USVL1VR-Ls)carlsiB290
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Carg19386Wax gourdcarwgoB0397
Carg19386Wax gourdcarwgoB0401
Carg19386Cucumber (Gy14) v2carcgybB0325
Carg19386Cucumber (Gy14) v2carcgybB0326
Carg19386Cucumber (Gy14) v1carcgyB0368
Carg19386Cucumber (Gy14) v1carcgyB0372
Carg19386Cucurbita maxima (Rimu)carcmaB0438
Carg19386Cucurbita maxima (Rimu)carcmaB0440
Carg19386Cucurbita maxima (Rimu)carcmaB0441
Carg19386Cucurbita maxima (Rimu)carcmaB0442
Carg19386Cucurbita maxima (Rimu)carcmaB0443
Carg19386Cucurbita moschata (Rifu)carcmoB0431
Carg19386Cucurbita moschata (Rifu)carcmoB0434
Carg19386Cucurbita moschata (Rifu)carcmoB0436
Carg19386Cucurbita pepo (Zucchini)carcpeB0436
Carg19386Cucurbita pepo (Zucchini)carcpeB0437
Carg19386Cucurbita pepo (Zucchini)carcpeB0438
Carg19386Cucurbita pepo (Zucchini)carcpeB0440
Carg19386Wild cucumber (PI 183967)carcpiB0347
Carg19386Wild cucumber (PI 183967)carcpiB0348
Carg19386Cucumber (Chinese Long) v2carcuB0341
Carg19386Cucumber (Chinese Long) v2carcuB0342
Carg19386Cucumber (Chinese Long) v3carcucB0346
Carg19386Cucumber (Chinese Long) v3carcucB0347
Carg19386Bottle gourd (USVL1VR-Ls)carlsiB288
Carg19386Melon (DHL92) v3.5.1carmeB0320
Carg19386Melon (DHL92) v3.5.1carmeB0321
Carg19386Melon (DHL92) v3.6.1carmedB0329
Carg19386Melon (DHL92) v3.6.1carmedB0330
Carg19386Watermelon (Charleston Gray)carwcgB0307
Carg19386Watermelon (Charleston Gray)carwcgB0308
Carg19386Watermelon (97103) v1carwmB0305
Carg19386Watermelon (97103) v1carwmB0307
Carg19386Watermelon (97103) v2carwmbB0323
Carg19386Watermelon (97103) v2carwmbB0324