Lsi11G004690 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi11G004690
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Rubredoxin
Location	chr11 : 4929688 .. 4930293 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGCTTATTCCTCAGCTAGACCCACTCTCTCCTTCCATCTCTCCCAACCTTCCCTTCCAATTCCCAGATTCAACTTCAAACCCCCCGCCGCCGCCGCCATCCCTGCCGTTCCGCCGTTGCAGAGATCGTCGGCGGCGAGAGCCAACTCCATTTTCACCCTCAACTCTATCGACGTCTCTAAAGAAGACAAACCCACTTCTGATGACCCAAATACGCCGTCGCCGCCGCCGGTAGTGGCGGTGGAAGAGGAGGAAGAGAAGTTTGATAAGCGGCGGCTGGAGGAGAATTTTGCAGTGCTGAACACAGGGATATATGAGTGCAGGTCATGTGGGCATAAGTTCGATGAGGCGGTCGGGGATCCGACGTATCCGATAGCGCCGGGACTGCCGTTCGAGCAGCTGCCGGAGGACTGGCGGTGTCCGACGTGTGGGGCGGCGAAGAGCTTCTTTGAGAGTAAGAGTGTGGAGATTGCTGGGTTTGCTCAGAATCAGCAGTATGGACTTGGAGGAAACACTTTGACTTCTGGGCAGAAGGCTGTGCTTATATATGGAAGCTTGTTGTTCTTCTTTGCTCTGTTCCTCTCTGGCTATTTCTTGCAATGA

mRNA sequence

ATGGCTGCTTATTCCTCAGCTAGACCCACTCTCTCCTTCCATCTCTCCCAACCTTCCCTTCCAATTCCCAGATTCAACTTCAAACCCCCCGCCGCCGCCGCCATCCCTGCCGTTCCGCCGTTGCAGAGATCGTCGGCGGCGAGAGCCAACTCCATTTTCACCCTCAACTCTATCGACGTCTCTAAAGAAGACAAACCCACTTCTGATGACCCAAATACGCCGTCGCCGCCGCCGGTAGTGGCGGTGGAAGAGGAGGAAGAGAAGTTTGATAAGCGGCGGCTGGAGGAGAATTTTGCAGTGCTGAACACAGGGATATATGAGTGCAGGTCATGTGGGCATAAGTTCGATGAGGCGGTCGGGGATCCGACGTATCCGATAGCGCCGGGACTGCCGTTCGAGCAGCTGCCGGAGGACTGGCGGTGTCCGACGTGTGGGGCGGCGAAGAGCTTCTTTGAGAGTAAGAGTGTGGAGATTGCTGGGTTTGCTCAGAATCAGCAGTATGGACTTGGAGGAAACACTTTGACTTCTGGGCAGAAGGCTGTGCTTATATATGGAAGCTTGTTGTTCTTCTTTGCTCTGTTCCTCTCTGGCTATTTCTTGCAATGA

Coding sequence (CDS)

ATGGCTGCTTATTCCTCAGCTAGACCCACTCTCTCCTTCCATCTCTCCCAACCTTCCCTTCCAATTCCCAGATTCAACTTCAAACCCCCCGCCGCCGCCGCCATCCCTGCCGTTCCGCCGTTGCAGAGATCGTCGGCGGCGAGAGCCAACTCCATTTTCACCCTCAACTCTATCGACGTCTCTAAAGAAGACAAACCCACTTCTGATGACCCAAATACGCCGTCGCCGCCGCCGGTAGTGGCGGTGGAAGAGGAGGAAGAGAAGTTTGATAAGCGGCGGCTGGAGGAGAATTTTGCAGTGCTGAACACAGGGATATATGAGTGCAGGTCATGTGGGCATAAGTTCGATGAGGCGGTCGGGGATCCGACGTATCCGATAGCGCCGGGACTGCCGTTCGAGCAGCTGCCGGAGGACTGGCGGTGTCCGACGTGTGGGGCGGCGAAGAGCTTCTTTGAGAGTAAGAGTGTGGAGATTGCTGGGTTTGCTCAGAATCAGCAGTATGGACTTGGAGGAAACACTTTGACTTCTGGGCAGAAGGCTGTGCTTATATATGGAAGCTTGTTGTTCTTCTTTGCTCTGTTCCTCTCTGGCTATTTCTTGCAATGA

Protein sequence

MAAYSSARPTLSFHLSQPSLPIPRFNFKPPAAAAIPAVPPLQRSSAARANSIFTLNSIDVSKEDKPTSDDPNTPSPPPVVAVEEEEEKFDKRRLEENFAVLNTGIYECRSCGHKFDEAVGDPTYPIAPGLPFEQLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGNTLTSGQKAVLIYGSLLFFFALFLSGYFLQ

Homology

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BLAST of Lsi11G004690 vs. Swiss-Prot
Match: RUBR_SYNY3 (Rubredoxin OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=rub PE=3 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 5.4e-19
Identity = 47/110 (42.73%), Postives = 68/110 (61.82%), Query Frame = 1


Query: 91  KRRLEENFAVLNTGIYECRSCGHKFDEAVGDPTYPIAPGLPFEQLPEDWRCPTCGAAKSF 150
           +R  E+  A L +  +ECR+CG+ +  + GD    ++PG PFE LP +W+CP CGA +++
Sbjct: 3   ERPPEKTLAELASPNHECRACGYVYIPSQGDQKTSVSPGTPFEALPLNWKCPVCGAPRNY 62

Query: 151 FESKSVEIA--GFAQNQQYGLGGNTLTSGQKAVLIYGSLLFFFALFLSGY 199
           F S     A  GFA+N  YG G N ++ G+K +LI+GSL   F  FLS Y
Sbjct: 63  FISTGETDAPSGFAENLNYGFGFNRMSGGKKNLLIFGSLFVIFLFFLSLY 112

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BLAST of Lsi11G004690 vs. Swiss-Prot
Match: RUBR_ANAVT (Rubredoxin OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=rub PE=3 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 7.7e-18
Identity = 49/107 (45.79%), Postives = 66/107 (61.68%), Query Frame = 1


Query: 99  AVLNTGI--YECRSCGHKFDEAVGDPTYPIAPGLPFEQLPEDWRCPTCGAAKSFFES--K 158
           AV NT +  +ECRSCG+ ++   GD  + IAP  PF +LP +WRCP C A K+ F +   
Sbjct: 5   AVENTVLDRFECRSCGYVYEPEKGDSKHDIAPETPFAELPINWRCPVCTAKKAAFSNIGP 64

Query: 159 SVEIAGFAQNQQYGLGGNTLTSGQKAVLIYGSLLFFFALFLSGYFLQ 202
           +   +GF +N  YGLG N LT  QK +LI+G+L   F  F+S Y LQ
Sbjct: 65  AGTASGFRENLGYGLGVNKLTPAQKNILIFGALALGFLFFISLYGLQ 111

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BLAST of Lsi11G004690 vs. Swiss-Prot
Match: RUBR_NOSS1 (Rubredoxin OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=rub PE=3 SV=2)

HSP 1 Score: 91.3 bits (225), Expect = 1.3e-17
Identity = 49/107 (45.79%), Postives = 66/107 (61.68%), Query Frame = 1


Query: 99  AVLNTGI--YECRSCGHKFDEAVGDPTYPIAPGLPFEQLPEDWRCPTCGAAKSFFES--K 158
           AV NT +  +ECRSCG+ ++   GD  + IAP  PF +LP +WRCP C A K+ F +   
Sbjct: 5   AVENTVLDRFECRSCGYVYEPEKGDNKHDIAPETPFAELPINWRCPVCTAKKAAFTNIGP 64

Query: 159 SVEIAGFAQNQQYGLGGNTLTSGQKAVLIYGSLLFFFALFLSGYFLQ 202
           +   +GF +N  YGLG N LT  QK +LI+G+L   F  F+S Y LQ
Sbjct: 65  AGTASGFRENLGYGLGVNKLTPAQKNILIFGALALGFLFFISLYGLQ 111

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BLAST of Lsi11G004690 vs. Swiss-Prot
Match: HRB_MOOTA (High molecular weight rubredoxin OS=Moorella thermoacetica (strain ATCC 39073) GN=hrb PE=1 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 5.4e-11
Identity = 33/80 (41.25%), Postives = 40/80 (50.00%), Query Frame = 1


Query: 73  TPSPPPVVAVEEEEEKFDKRRLEENFAVLNTGIYECRSCGHKFDEAVGDPTYPIAPGLPF 132
           TP   P   V  E++K            L +  Y+C  C + +D   GDP + IAPG PF
Sbjct: 158 TPKTAPTFTVGREKDK----------TALASPKYQCTICNYVYDPVQGDPEHGIAPGTPF 217

Query: 133 EQLPEDWRCPTCGAAKSFFE 153
             LPEDW CP CGA K  FE
Sbjct: 218 ADLPEDWTCPICGAGKDAFE 227

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BLAST of Lsi11G004690 vs. Swiss-Prot
Match: RUBR_DESGI (Rubredoxin OS=Desulfovibrio gigas PE=1 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 9.2e-11
Identity = 27/50 (54.00%), Postives = 33/50 (66.00%), Query Frame = 1


Query: 105 IYECRSCGHKFDEAVGDPTYPIAPGLPFEQLPEDWRCPTCGAAKSFFESK 155
           IY C  CG+++D A GDP   I PG  FE LP+DW CP CGA+K  FE +
Sbjct: 3   IYVCTVCGYEYDPAKGDPDSGIKPGTKFEDLPDDWACPVCGASKDAFEKQ 52

[Close]

BLAST of Lsi11G004690 vs. TrEMBL
Match: E5GBR8_CUCME (Rubredoxin OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 374.8 bits (961), Expect = 6.7e-101
Identity = 190/201 (94.53%), Postives = 191/201 (95.02%), Query Frame = 1


Query: 1   MAAYSSARPTLSFHLSQPSLPIPRFNFKPPAAAAIPAVPPLQRSSAARANSIFTLNSIDV 60
           MA YSSARPTLSFHLSQPSLPIPRFNFKPP AA IP   PLQR SAAR  SIFTLNSIDV
Sbjct: 1   MAVYSSARPTLSFHLSQPSLPIPRFNFKPPVAATIP---PLQRLSAARPISIFTLNSIDV 60

Query: 61  SKEDKPTSDDPNTPSPPPVVAVEEEEEKFDKRRLEENFAVLNTGIYECRSCGHKFDEAVG 120
           SKEDKPTSDDPNTPSPPPVVAVE+EEEKFDKRRLEE FAVLNTGIYECRSCGHKFDEAVG
Sbjct: 61  SKEDKPTSDDPNTPSPPPVVAVEKEEEKFDKRRLEERFAVLNTGIYECRSCGHKFDEAVG 120

Query: 121 DPTYPIAPGLPFEQLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGNTLTSGQKA 180
           DPTYPIAPGLPFEQLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGNTLTSGQKA
Sbjct: 121 DPTYPIAPGLPFEQLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGNTLTSGQKA 180

Query: 181 VLIYGSLLFFFALFLSGYFLQ 202
           VLIYGSLLFFFALFLSGYFLQ
Sbjct: 181 VLIYGSLLFFFALFLSGYFLQ 198

[Close]

BLAST of Lsi11G004690 vs. TrEMBL
Match: A0A0A0LJE4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G012140 PE=4 SV=1)

HSP 1 Score: 362.5 bits (929), Expect = 3.4e-97
Identity = 187/202 (92.57%), Postives = 188/202 (93.07%), Query Frame = 1


Query: 1   MAAYSSARPT-LSFHLSQPSLPIPRFNFKPPAAAAIPAVPPLQRSSAARANSIFTLNSID 60
           MA YSSARPT LSFHLSQPSLPIPRFNFKPP  A   A+PPL RSSAAR  SIFTLNSID
Sbjct: 1   MAVYSSARPTTLSFHLSQPSLPIPRFNFKPPIPATA-AIPPLLRSSAARPISIFTLNSID 60

Query: 61  VSKEDKPTSDDPNTPSPPPVVAVEEEEEKFDKRRLEENFAVLNTGIYECRSCGHKFDEAV 120
           VSKEDKPTSDDPNTP P PVVAVEEEEEKFDKRRLEE FAVLNTGIYECRSCGHKFDEAV
Sbjct: 61  VSKEDKPTSDDPNTPVPLPVVAVEEEEEKFDKRRLEEKFAVLNTGIYECRSCGHKFDEAV 120

Query: 121 GDPTYPIAPGLPFEQLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGNTLTSGQK 180
           GDPTYPIAPGLPFEQLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGNTLTSGQK
Sbjct: 121 GDPTYPIAPGLPFEQLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGNTLTSGQK 180

Query: 181 AVLIYGSLLFFFALFLSGYFLQ 202
           AVLIYGSL FFFALFLSGYFLQ
Sbjct: 181 AVLIYGSLFFFFALFLSGYFLQ 201

[Close]

BLAST of Lsi11G004690 vs. TrEMBL
Match: F6HTU5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0030g01590 PE=4 SV=1)

HSP 1 Score: 256.9 bits (655), Expect = 2.0e-65
Identity = 136/205 (66.34%), Postives = 157/205 (76.59%), Query Frame = 1


Query: 3   AYSSARPTLSFHLS------QPSLPIPRFNFKPPAAAAIPAVPPLQRSSAARANSIFTLN 62
           A ++ RPT SFHLS       P  P P   F PP    IP++  L +   A+    F+  
Sbjct: 2   ACATTRPTFSFHLSTTLPQQSPPKPKPHLTF-PPHLPKIPSISALHKPPKAQ----FSSR 61

Query: 63  SIDVSKEDKPTSDDPNTPSPPPVVAVEEEEEKFDKRRLEENFAVLNTGIYECRSCGHKFD 122
           S+DVSKEDKPTS+ P++ S P   +  +E E FDKRRLEE FAVLNTGIYECRSCG+K+D
Sbjct: 62  SVDVSKEDKPTSEQPDS-STPTSDSPPQEPENFDKRRLEEKFAVLNTGIYECRSCGYKYD 121

Query: 123 EAVGDPTYPIAPGLPFEQLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGNTLTS 182
           EA GDP+YPI PGL F++LP+DWRCPTCGAA+SFFESKSVEIAGFAQNQQ+GLGGNTLTS
Sbjct: 122 EAAGDPSYPIPPGLQFDKLPDDWRCPTCGAARSFFESKSVEIAGFAQNQQFGLGGNTLTS 181

Query: 183 GQKAVLIYGSLLFFFALFLSGYFLQ 202
           GQKAVLIYGSLLFFF LFLSGYFLQ
Sbjct: 182 GQKAVLIYGSLLFFFVLFLSGYFLQ 200

[Close]

BLAST of Lsi11G004690 vs. TrEMBL
Match: A0A067JUG3_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23458 PE=4 SV=1)

HSP 1 Score: 251.5 bits (641), Expect = 8.5e-64
Identity = 136/203 (67.00%), Postives = 156/203 (76.85%), Query Frame = 1


Query: 3   AYSSARPTLSFHLSQPSLPIPRFNFKPPAAAAIPAVPPLQRSSAARANSIFTLNSIDVSK 62
           A ++ RPT SFHLS P    P  +F   +  ++   P        +  + FT+ SIDVSK
Sbjct: 2   ASATTRPTFSFHLSHPR---PNTHFSKSSFLSLYKTP--------KTQTHFTIRSIDVSK 61

Query: 63  EDK-PTSDDPNTPSP---PPVVAVEEEEEKFDKRRLEENFAVLNTGIYECRSCGHKFDEA 122
           EDK PTS+  + P+P   PP    +EEE KFDKRRLEE FAVLNTGIYECRSCG+K+DEA
Sbjct: 62  EDKRPTSNQQSIPTPLESPP----QEEEPKFDKRRLEEKFAVLNTGIYECRSCGYKYDEA 121

Query: 123 VGDPTYPIAPGLPFEQLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGNTLTSGQ 182
           VGDP+YPI PGL F++LPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQ+GLGGN+LTSGQ
Sbjct: 122 VGDPSYPIPPGLQFDKLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQFGLGGNSLTSGQ 181

Query: 183 KAVLIYGSLLFFFALFLSGYFLQ 202
           KA LIYGSLL FFALFLSGYFLQ
Sbjct: 182 KAALIYGSLLLFFALFLSGYFLQ 189

[Close]

BLAST of Lsi11G004690 vs. TrEMBL
Match: M5W043_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011413mg PE=4 SV=1)

HSP 1 Score: 250.0 bits (637), Expect = 2.5e-63
Identity = 135/212 (63.68%), Postives = 156/212 (73.58%), Query Frame = 1


Query: 3   AYSSARPTLSFHLS----QPSLPIPRFNFKPPAAAAIPAVPPLQRSSAARAN--SIFTLN 62
           A ++ RPT SFHLS    Q S P P+  F  P    +P +P +  S   + +  +  T N
Sbjct: 2   ACATTRPTFSFHLSTSFSQHSHPKPKTQFTNPTL--LPKIPSISLSLTHKPHKPNNLTTN 61

Query: 63  SIDVSKEDKPTSDDPNTPSPPPVVAVEEEEEK-------FDKRRLEENFAVLNTGIYECR 122
           SIDVSKEDKPTSD+P +P P   +  E E E+       FDKRRLEE FAVLNTGIYECR
Sbjct: 62  SIDVSKEDKPTSDEPASPPPTSYIEPEPEPEQEEAAETTFDKRRLEEKFAVLNTGIYECR 121

Query: 123 SCGHKFDEAVGDPTYPIAPGLPFEQLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGL 182
           SCG+K+DEAVGDP+YPI PGL F++LPEDWRCPTCGAA+SFF SKSVEIAGFAQNQQ+GL
Sbjct: 122 SCGYKYDEAVGDPSYPIPPGLQFDKLPEDWRCPTCGAAQSFFVSKSVEIAGFAQNQQFGL 181

Query: 183 GGNTLTSGQKAVLIYGSLLFFFALFLSGYFLQ 202
           GGN LTSGQKAVLI+G L  FF LFLSGYFLQ
Sbjct: 182 GGNALTSGQKAVLIFGGLFLFFVLFLSGYFLQ 211

[Close]

BLAST of Lsi11G004690 vs. TAIR10
Match: AT1G54500.1 (AT1G54500.1 Rubredoxin-like superfamily protein)

HSP 1 Score: 200.3 bits (508), Expect = 1.1e-51
Identity = 99/144 (68.75%), Postives = 114/144 (79.17%), Query Frame = 1


Query: 60  VSKEDK--PTSDDPNTPSPPPVVAVEEEEEKFDKRRLEENFAVLNTGIYECRSCGHKFDE 119
           VS++D   P S    T         +E E+  +KRR+EE FAVLNTGIYECRSCG+K+DE
Sbjct: 56  VSRDDAATPLSSSDQTQE----TETKEVEDTIEKRRMEEKFAVLNTGIYECRSCGYKYDE 115

Query: 120 AVGDPTYPIAPGLPFEQLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGNTLTSG 179
           + GDP+YPI PG  F++LPEDWRCPTCGAA+SFFESK VEIAGFAQNQQYGLGGN LTSG
Sbjct: 116 SAGDPSYPIPPGFQFDKLPEDWRCPTCGAAQSFFESKMVEIAGFAQNQQYGLGGNALTSG 175

Query: 180 QKAVLIYGSLLFFFALFLSGYFLQ 202
           QK  LI+GSLL FFALFLSGYF+Q
Sbjct: 176 QKTGLIFGSLLLFFALFLSGYFIQ 195

[Close]

BLAST of Lsi11G004690 vs. NCBI nr
Match: gi|307136059|gb|ADN33910.1| (rubredoxin [Cucumis melo subsp. melo])

HSP 1 Score: 374.8 bits (961), Expect = 9.5e-101
Identity = 190/201 (94.53%), Postives = 191/201 (95.02%), Query Frame = 1


Query: 1   MAAYSSARPTLSFHLSQPSLPIPRFNFKPPAAAAIPAVPPLQRSSAARANSIFTLNSIDV 60
           MA YSSARPTLSFHLSQPSLPIPRFNFKPP AA IP   PLQR SAAR  SIFTLNSIDV
Sbjct: 1   MAVYSSARPTLSFHLSQPSLPIPRFNFKPPVAATIP---PLQRLSAARPISIFTLNSIDV 60

Query: 61  SKEDKPTSDDPNTPSPPPVVAVEEEEEKFDKRRLEENFAVLNTGIYECRSCGHKFDEAVG 120
           SKEDKPTSDDPNTPSPPPVVAVE+EEEKFDKRRLEE FAVLNTGIYECRSCGHKFDEAVG
Sbjct: 61  SKEDKPTSDDPNTPSPPPVVAVEKEEEKFDKRRLEERFAVLNTGIYECRSCGHKFDEAVG 120

Query: 121 DPTYPIAPGLPFEQLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGNTLTSGQKA 180
           DPTYPIAPGLPFEQLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGNTLTSGQKA
Sbjct: 121 DPTYPIAPGLPFEQLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGNTLTSGQKA 180

Query: 181 VLIYGSLLFFFALFLSGYFLQ 202
           VLIYGSLLFFFALFLSGYFLQ
Sbjct: 181 VLIYGSLLFFFALFLSGYFLQ 198

[Close]

BLAST of Lsi11G004690 vs. NCBI nr
Match: gi|778666589|ref|XP_004139218.2| (PREDICTED: uncharacterized protein LOC101219075 [Cucumis sativus])

HSP 1 Score: 362.5 bits (929), Expect = 4.9e-97
Identity = 187/202 (92.57%), Postives = 188/202 (93.07%), Query Frame = 1


Query: 1   MAAYSSARPT-LSFHLSQPSLPIPRFNFKPPAAAAIPAVPPLQRSSAARANSIFTLNSID 60
           MA YSSARPT LSFHLSQPSLPIPRFNFKPP  A   A+PPL RSSAAR  SIFTLNSID
Sbjct: 1   MAVYSSARPTTLSFHLSQPSLPIPRFNFKPPIPATA-AIPPLLRSSAARPISIFTLNSID 60

Query: 61  VSKEDKPTSDDPNTPSPPPVVAVEEEEEKFDKRRLEENFAVLNTGIYECRSCGHKFDEAV 120
           VSKEDKPTSDDPNTP P PVVAVEEEEEKFDKRRLEE FAVLNTGIYECRSCGHKFDEAV
Sbjct: 61  VSKEDKPTSDDPNTPVPLPVVAVEEEEEKFDKRRLEEKFAVLNTGIYECRSCGHKFDEAV 120

Query: 121 GDPTYPIAPGLPFEQLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGNTLTSGQK 180
           GDPTYPIAPGLPFEQLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGNTLTSGQK
Sbjct: 121 GDPTYPIAPGLPFEQLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGNTLTSGQK 180

Query: 181 AVLIYGSLLFFFALFLSGYFLQ 202
           AVLIYGSL FFFALFLSGYFLQ
Sbjct: 181 AVLIYGSLFFFFALFLSGYFLQ 201

[Close]

BLAST of Lsi11G004690 vs. NCBI nr
Match: gi|659071594|ref|XP_008460788.1| (PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103499548 [Cucumis melo])

HSP 1 Score: 299.7 bits (766), Expect = 3.9e-78
Identity = 159/195 (81.54%), Postives = 164/195 (84.10%), Query Frame = 1


Query: 14  HLSQPSLPIPRFNFKPPAAAAIPAVPPLQRSSAARANSI-------FTLNSIDVSKEDKP 73
           H   PSLP        P+ + I    P +R  +A A  I       FTLNSIDVSKEDKP
Sbjct: 14  HSLLPSLPTF------PSNSQIQLQTPRRRHHSAVAEIICGETHLHFTLNSIDVSKEDKP 73

Query: 74  TSDDPNTPSPPPVVAVEEEEEKFDKRRLEENFAVLNTGIYECRSCGHKFDEAVGDPTYPI 133
           TSDDPNTPSPPPVVAVE+EEEKFDKRRLEE FAVLNTGIYECRSCGHKFDEAVGDPTYPI
Sbjct: 74  TSDDPNTPSPPPVVAVEKEEEKFDKRRLEERFAVLNTGIYECRSCGHKFDEAVGDPTYPI 133

Query: 134 APGLPFEQLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGNTLTSGQKAVLIYGS 193
           APGLPFEQLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGNTLTSGQKAVLIYGS
Sbjct: 134 APGLPFEQLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGNTLTSGQKAVLIYGS 193

Query: 194 LLFFFALFLSGYFLQ 202
           LLFFFALFLSGYFLQ
Sbjct: 194 LLFFFALFLSGYFLQ 202

[Close]

BLAST of Lsi11G004690 vs. NCBI nr
Match: gi|1009117729|ref|XP_015875473.1| (PREDICTED: uncharacterized protein LOC107412257 [Ziziphus jujuba])

HSP 1 Score: 259.2 bits (661), Expect = 5.8e-66
Identity = 144/214 (67.29%), Postives = 160/214 (74.77%), Query Frame = 1


Query: 3   AYSSARPTLSFHLS----QPSLPIPRFNFKPPAAAAIPAVPPLQRSSAARANSIFTLNSI 62
           A S+ RPT SFHLS    QPSLP  +  F  P+  +      L +SS    +  F  NSI
Sbjct: 2   ACSATRPTFSFHLSTSFSQPSLPKSKTLFSNPSLISKFPTISLHKSSK---HLKFVSNSI 61

Query: 63  DVSKEDKPTSDD-----------PNTPSPPPVVAVEEEEEKFDKRRLEENFAVLNTGIYE 122
           DVSKEDKPT+++           P++PSPPP    EE E KFD RRLEE FAVLNTGIYE
Sbjct: 62  DVSKEDKPTAENQPSSQESQPPPPSSPSPPPP---EEGEVKFDNRRLEEKFAVLNTGIYE 121

Query: 123 CRSCGHKFDEAVGDPTYPIAPGLPFEQLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQY 182
           CRSCG+K+DEAVGDP YPI PGL F++LPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQ+
Sbjct: 122 CRSCGYKYDEAVGDPAYPIPPGLQFDKLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQF 181

Query: 183 GLGGNTLTSGQKAVLIYGSLLFFFALFLSGYFLQ 202
           GLGGNTLTSGQKAVLIYGSL FFF LFLSGYFLQ
Sbjct: 182 GLGGNTLTSGQKAVLIYGSLFFFFVLFLSGYFLQ 209

[Close]

BLAST of Lsi11G004690 vs. NCBI nr
Match: gi|225451241|ref|XP_002276406.1| (PREDICTED: uncharacterized protein LOC100259018 [Vitis vinifera])

HSP 1 Score: 256.9 bits (655), Expect = 2.9e-65
Identity = 136/205 (66.34%), Postives = 157/205 (76.59%), Query Frame = 1


Query: 3   AYSSARPTLSFHLS------QPSLPIPRFNFKPPAAAAIPAVPPLQRSSAARANSIFTLN 62
           A ++ RPT SFHLS       P  P P   F PP    IP++  L +   A+    F+  
Sbjct: 2   ACATTRPTFSFHLSTTLPQQSPPKPKPHLTF-PPHLPKIPSISALHKPPKAQ----FSSR 61

Query: 63  SIDVSKEDKPTSDDPNTPSPPPVVAVEEEEEKFDKRRLEENFAVLNTGIYECRSCGHKFD 122
           S+DVSKEDKPTS+ P++ S P   +  +E E FDKRRLEE FAVLNTGIYECRSCG+K+D
Sbjct: 62  SVDVSKEDKPTSEQPDS-STPTSDSPPQEPENFDKRRLEEKFAVLNTGIYECRSCGYKYD 121

Query: 123 EAVGDPTYPIAPGLPFEQLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGNTLTS 182
           EA GDP+YPI PGL F++LP+DWRCPTCGAA+SFFESKSVEIAGFAQNQQ+GLGGNTLTS
Sbjct: 122 EAAGDPSYPIPPGLQFDKLPDDWRCPTCGAARSFFESKSVEIAGFAQNQQFGLGGNTLTS 181

Query: 183 GQKAVLIYGSLLFFFALFLSGYFLQ 202
           GQKAVLIYGSLLFFF LFLSGYFLQ
Sbjct: 182 GQKAVLIYGSLLFFFVLFLSGYFLQ 200

The following BLAST results are available for this feature:

BLAST of Lsi11G004690 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RUBR_SYNY3	5.4e-19	42.73	Rubredoxin OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=rub PE=3 SV=1	[more]
RUBR_ANAVT	7.7e-18	45.79	Rubredoxin OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=rub PE=3 SV=...	[more]
RUBR_NOSS1	1.3e-17	45.79	Rubredoxin OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=rub PE=3 SV=2	[more]
HRB_MOOTA	5.4e-11	41.25	High molecular weight rubredoxin OS=Moorella thermoacetica (strain ATCC 39073) G...	[more]
RUBR_DESGI	9.2e-11	54.00	Rubredoxin OS=Desulfovibrio gigas PE=1 SV=1	[more]

BLAST of Lsi11G004690 vs. TrEMBL


Match Name	E-value	Identity	Description
E5GBR8_CUCME	6.7e-101	94.53	Rubredoxin OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
A0A0A0LJE4_CUCSA	3.4e-97	92.57	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G012140 PE=4 SV=1	[more]
F6HTU5_VITVI	2.0e-65	66.34	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0030g01590 PE=4 SV=...	[more]
A0A067JUG3_JATCU	8.5e-64	67.00	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23458 PE=4 SV=1	[more]
M5W043_PRUPE	2.5e-63	63.68	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011413mg PE=4 SV=1	[more]

BLAST of Lsi11G004690 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G54500.1	1.1e-51	68.75	Rubredoxin-like superfamily protein	[more]

BLAST of Lsi11G004690 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|307136059\|gb\|ADN33910.1\|	9.5e-101	94.53	rubredoxin [Cucumis melo subsp. melo]	[more]
gi\|778666589\|ref\|XP_004139218.2\|	4.9e-97	92.57	PREDICTED: uncharacterized protein LOC101219075 [Cucumis sativus]	[more]
gi\|659071594\|ref\|XP_008460788.1\|	3.9e-78	81.54	PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103499548 [Cucumis me...	[more]
gi\|1009117729\|ref\|XP_015875473.1\|	5.8e-66	67.29	PREDICTED: uncharacterized protein LOC107412257 [Ziziphus jujuba]	[more]
gi\|225451241\|ref\|XP_002276406.1\|	2.9e-65	66.34	PREDICTED: uncharacterized protein LOC100259018 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005506	iron ion binding
GO:0046872	metal ion binding

Vocabulary: **INTERPRO**
Term	Definition
IPR024935	Rubredoxin_dom
IPR024934	Rubredoxin-like_dom
IPR018527	Rubredoxin_Fe_BS
IPR004039	Rubredoxin-type fold

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0030154	cell differentiation
biological_process	GO:0009965	leaf morphogenesis
biological_process	GO:0009773	photosynthetic electron transport in photosystem I
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
biological_process	GO:0044237	cellular metabolic process
biological_process	GO:0044763	single-organism cellular process
biological_process	GO:0044767	single-organism developmental process
biological_process	GO:0009987	cellular process
biological_process	GO:0044699	single-organism process
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005506	iron ion binding
molecular_function	GO:0046872	metal ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi11G004690.1	Lsi11G004690.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004039	Rubredoxin-type fold	GENE3D	G3DSA:2.20.28.10		coord: 102..155 score: 4.3
IPR018527	Rubredoxin, iron-binding site	PROSITE	PS00202	RUBREDOXIN	coord: 135..145 scor
IPR024934	Rubredoxin-like domain	PROFILE	PS50903	RUBREDOXIN_LIKE	coord: 103..154 score: 13
IPR024935	Rubredoxin domain	PRINTS	PR00163	RUBREDOXIN	coord: 135..151 score: 4.2E-8coord: 105..121 score: 4.
IPR024935	Rubredoxin domain	PFAM	PF00301	Rubredoxin	coord: 106..151 score: 1.4
None	No IPR available	PANTHER	PTHR10909	ELECTRON TRANSPORT OXIDOREDUCTASE	coord: 81..174 score: 1.9
None	No IPR available	unknown	SSF57802	Rubredoxin-like	coord: 102..168 score: 8.08

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi11G004690	Csa2G012140	Cucumber (Chinese Long) v2	culsiB098
Lsi11G004690	CSPI02G03220	Wild cucumber (PI 183967)	cpilsiB096
Lsi11G004690	Cucsa.133480	Cucumber (Gy14) v1	cgylsiB205
Lsi11G004690	CmaCh05G011830	Cucurbita maxima (Rimu)	cmalsiB715
Lsi11G004690	CmoCh05G012070	Cucurbita moschata (Rifu)	cmolsiB706
Lsi11G004690	Cla019828	Watermelon (97103) v1	lsiwmB107
Lsi11G004690	MELO3C004358	Melon (DHL92) v3.5.1	lsimeB115
Lsi11G004690	ClCG02G016370	Watermelon (Charleston Gray)	lsiwcgB098
Lsi11G004690	MELO3C004358.2	Melon (DHL92) v3.6.1	lsimedB123
Lsi11G004690	Bhi06G001497	Wax gourd	lsiwgoB108
Lsi11G004690	Cp4.1LG11g09830	Cucurbita pepo (Zucchini)	cpelsiB074
Lsi11G004690	Carg23432	Silver-seed gourd	carlsiB271
Lsi11G004690	CsaV3_2G004360	Cucumber (Chinese Long) v3	cuclsiB108

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi11G004690	Melon (DHL92) v3.6.1	lsimedB114
Lsi11G004690	Silver-seed gourd	carlsiB654
Lsi11G004690	Cucumber (Chinese Long) v3	cuclsiB015
Lsi11G004690	Cucumber (Chinese Long) v3	cuclsiB532
Lsi11G004690	Watermelon (97103) v2	lsiwmbB087
Lsi11G004690	Watermelon (97103) v2	lsiwmbB110
Lsi11G004690	Bottle gourd (USVL1VR-Ls)	lsilsiB050
Lsi11G004690	Cucurbita maxima (Rimu)	cmalsiB098
Lsi11G004690	Cucurbita maxima (Rimu)	cmalsiB159
Lsi11G004690	Cucurbita moschata (Rifu)	cmolsiB084
Lsi11G004690	Cucurbita moschata (Rifu)	cmolsiB148
Lsi11G004690	Cucurbita pepo (Zucchini)	cpelsiB659
Lsi11G004690	Cucumber (Gy14) v2	cgyblsiB089
Lsi11G004690	Cucumber (Gy14) v2	cgyblsiB467