Cp4.1LG11g09830 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG11g09830
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Rubredoxin
Location	Cp4.1LG11 : 8233483 .. 8234082 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGCTGCTGCTTATGCCTCTGCAAGACCCACTCTCTCCTTCCATCTCTCTCAACCCTCCGTTCCCAGTCCCAGATTCAATTTCAAACCCCCCCTCGTTGCCTTTCCGCCGTTGCAGAGATCGGCGGCGGCGAGACCCATCCCCATTTTCACCCTCAACTCCATCGACGTCTCCAAAGAAGACAAACCCACTTCGGAAGACCCGGATTTGGCGGCGGTAGTTGGGGAAGAGGCGGCGGAGGCGGCGGAGGAGAAGTTGGACAGGCGGCGGATGGAGGAGAAATTTGCAGTGCTGAACACGGGGATATATGAGTGCAGGTCGTGTGGGCATAAGTTCGACGAGGCGGTTGGGGATCCGACGTATCCGATAGCGCCGGGGCTGCCGTTCGAGCAGCTGCCGGAGGACTGGCGGTGCCCGACGTGTGGGGCGGCGAAGAGCTTCTTCGAGAGTAAGAGTGTGGAGATAGCGGGGTTTGCTCAGAATCAGCAGTACGGACTTGGAGGGAACACTCTGACTTCAGGTCAGAAGGCAGTGCTCATCTATGGAACCTTGTTCTTCTTCTTTGCTTTGTTCCTCTCTGGCTATTTCTTGCAATGA

mRNA sequence

ATGGCTGCTGCTGCTTATGCCTCTGCAAGACCCACTCTCTCCTTCCATCTCTCTCAACCCTCCGTTCCCAGTCCCAGATTCAATTTCAAACCCCCCCTCGTTGCCTTTCCGCCGTTGCAGAGATCGGCGGCGGCGAGACCCATCCCCATTTTCACCCTCAACTCCATCGACGTCTCCAAAGAAGACAAACCCACTTCGGAAGACCCGGATTTGGCGGCGGTAGTTGGGGAAGAGGCGGCGGAGGCGGCGGAGGAGAAGTTGGACAGGCGGCGGATGGAGGAGAAATTTGCAGTGCTGAACACGGGGATATATGAGTGCAGGTCGTGTGGGCATAAGTTCGACGAGGCGGTTGGGGATCCGACGTATCCGATAGCGCCGGGGCTGCCGTTCGAGCAGCTGCCGGAGGACTGGCGGTGCCCGACGTGTGGGGCGGCGAAGAGCTTCTTCGAGAGTAAGAGTGTGGAGATAGCGGGGTTTGCTCAGAATCAGCAGTACGGACTTGGAGGGAACACTCTGACTTCAGGTCAGAAGGCAGTGCTCATCTATGGAACCTTGTTCTTCTTCTTTGCTTTGTTCCTCTCTGGCTATTTCTTGCAATGA

Coding sequence (CDS)

ATGGCTGCTGCTGCTTATGCCTCTGCAAGACCCACTCTCTCCTTCCATCTCTCTCAACCCTCCGTTCCCAGTCCCAGATTCAATTTCAAACCCCCCCTCGTTGCCTTTCCGCCGTTGCAGAGATCGGCGGCGGCGAGACCCATCCCCATTTTCACCCTCAACTCCATCGACGTCTCCAAAGAAGACAAACCCACTTCGGAAGACCCGGATTTGGCGGCGGTAGTTGGGGAAGAGGCGGCGGAGGCGGCGGAGGAGAAGTTGGACAGGCGGCGGATGGAGGAGAAATTTGCAGTGCTGAACACGGGGATATATGAGTGCAGGTCGTGTGGGCATAAGTTCGACGAGGCGGTTGGGGATCCGACGTATCCGATAGCGCCGGGGCTGCCGTTCGAGCAGCTGCCGGAGGACTGGCGGTGCCCGACGTGTGGGGCGGCGAAGAGCTTCTTCGAGAGTAAGAGTGTGGAGATAGCGGGGTTTGCTCAGAATCAGCAGTACGGACTTGGAGGGAACACTCTGACTTCAGGTCAGAAGGCAGTGCTCATCTATGGAACCTTGTTCTTCTTCTTTGCTTTGTTCCTCTCTGGCTATTTCTTGCAATGA

Protein sequence

MAAAAYASARPTLSFHLSQPSVPSPRFNFKPPLVAFPPLQRSAAARPIPIFTLNSIDVSKEDKPTSEDPDLAAVVGEEAAEAAEEKLDRRRMEEKFAVLNTGIYECRSCGHKFDEAVGDPTYPIAPGLPFEQLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGNTLTSGQKAVLIYGTLFFFFALFLSGYFLQ

Homology

[Close]

BLAST of Cp4.1LG11g09830 vs. Swiss-Prot
Match: RUBR_SYNY3 (Rubredoxin OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=rub PE=3 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 3.1e-19
Identity = 47/112 (41.96%), Postives = 69/112 (61.61%), Query Frame = 1


Query: 87  LDRRRMEEKFAVLNTGIYECRSCGHKFDEAVGDPTYPIAPGLPFEQLPEDWRCPTCGAAK 146
           +  R  E+  A L +  +ECR+CG+ +  + GD    ++PG PFE LP +W+CP CGA +
Sbjct: 1   MSERPPEKTLAELASPNHECRACGYVYIPSQGDQKTSVSPGTPFEALPLNWKCPVCGAPR 60

Query: 147 SFFESKSVEIA--GFAQNQQYGLGGNTLTSGQKAVLIYGTLFFFFALFLSGY 197
           ++F S     A  GFA+N  YG G N ++ G+K +LI+G+LF  F  FLS Y
Sbjct: 61  NYFISTGETDAPSGFAENLNYGFGFNRMSGGKKNLLIFGSLFVIFLFFLSLY 112

[Close]

BLAST of Cp4.1LG11g09830 vs. Swiss-Prot
Match: RUBR_ANAVT (Rubredoxin OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=rub PE=3 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 2.2e-17
Identity = 49/107 (45.79%), Postives = 65/107 (60.75%), Query Frame = 1


Query: 97  AVLNTGI--YECRSCGHKFDEAVGDPTYPIAPGLPFEQLPEDWRCPTCGAAKSFFES--K 156
           AV NT +  +ECRSCG+ ++   GD  + IAP  PF +LP +WRCP C A K+ F +   
Sbjct: 5   AVENTVLDRFECRSCGYVYEPEKGDSKHDIAPETPFAELPINWRCPVCTAKKAAFSNIGP 64

Query: 157 SVEIAGFAQNQQYGLGGNTLTSGQKAVLIYGTLFFFFALFLSGYFLQ 200
           +   +GF +N  YGLG N LT  QK +LI+G L   F  F+S Y LQ
Sbjct: 65  AGTASGFRENLGYGLGVNKLTPAQKNILIFGALALGFLFFISLYGLQ 111

[Close]

BLAST of Cp4.1LG11g09830 vs. Swiss-Prot
Match: RUBR_NOSS1 (Rubredoxin OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=rub PE=3 SV=2)

HSP 1 Score: 89.7 bits (221), Expect = 3.8e-17
Identity = 49/107 (45.79%), Postives = 65/107 (60.75%), Query Frame = 1


Query: 97  AVLNTGI--YECRSCGHKFDEAVGDPTYPIAPGLPFEQLPEDWRCPTCGAAKSFFES--K 156
           AV NT +  +ECRSCG+ ++   GD  + IAP  PF +LP +WRCP C A K+ F +   
Sbjct: 5   AVENTVLDRFECRSCGYVYEPEKGDNKHDIAPETPFAELPINWRCPVCTAKKAAFTNIGP 64

Query: 157 SVEIAGFAQNQQYGLGGNTLTSGQKAVLIYGTLFFFFALFLSGYFLQ 200
           +   +GF +N  YGLG N LT  QK +LI+G L   F  F+S Y LQ
Sbjct: 65  AGTASGFRENLGYGLGVNKLTPAQKNILIFGALALGFLFFISLYGLQ 111

[Close]

BLAST of Cp4.1LG11g09830 vs. Swiss-Prot
Match: RUBR_DESGI (Rubredoxin OS=Desulfovibrio gigas PE=1 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 9.1e-11
Identity = 27/50 (54.00%), Postives = 33/50 (66.00%), Query Frame = 1


Query: 103 IYECRSCGHKFDEAVGDPTYPIAPGLPFEQLPEDWRCPTCGAAKSFFESK 153
           IY C  CG+++D A GDP   I PG  FE LP+DW CP CGA+K  FE +
Sbjct: 3   IYVCTVCGYEYDPAKGDPDSGIKPGTKFEDLPDDWACPVCGASKDAFEKQ 52

[Close]

BLAST of Cp4.1LG11g09830 vs. Swiss-Prot
Match: HRB_MOOTA (High molecular weight rubredoxin OS=Moorella thermoacetica (strain ATCC 39073) GN=hrb PE=1 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 2.0e-10
Identity = 26/47 (55.32%), Postives = 30/47 (63.83%), Query Frame = 1


Query: 104 YECRSCGHKFDEAVGDPTYPIAPGLPFEQLPEDWRCPTCGAAKSFFE 151
           Y+C  C + +D   GDP + IAPG PF  LPEDW CP CGA K  FE
Sbjct: 181 YQCTICNYVYDPVQGDPEHGIAPGTPFADLPEDWTCPICGAGKDAFE 227

[Close]

BLAST of Cp4.1LG11g09830 vs. TrEMBL
Match: E5GBR8_CUCME (Rubredoxin OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 334.0 bits (855), Expect = 1.3e-88
Identity = 167/197 (84.77%), Postives = 178/197 (90.36%), Query Frame = 1


Query: 4   AAYASARPTLSFHLSQPSVPSPRFNFKPPLVA-FPPLQRSAAARPIPIFTLNSIDVSKED 63
           A Y+SARPTLSFHLSQPS+P PRFNFKPP+ A  PPLQR +AARPI IFTLNSIDVSKED
Sbjct: 2   AVYSSARPTLSFHLSQPSLPIPRFNFKPPVAATIPPLQRLSAARPISIFTLNSIDVSKED 61

Query: 64  KPTSEDPDLAAVVGEEAAEAAEEKLDRRRMEEKFAVLNTGIYECRSCGHKFDEAVGDPTY 123
           KPTS+DP+  +     A E  EEK D+RR+EE+FAVLNTGIYECRSCGHKFDEAVGDPTY
Sbjct: 62  KPTSDDPNTPSPPPVVAVEKEEEKFDKRRLEERFAVLNTGIYECRSCGHKFDEAVGDPTY 121

Query: 124 PIAPGLPFEQLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGNTLTSGQKAVLIY 183
           PIAPGLPFEQLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGNTLTSGQKAVLIY
Sbjct: 122 PIAPGLPFEQLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGNTLTSGQKAVLIY 181

Query: 184 GTLFFFFALFLSGYFLQ 200
           G+L FFFALFLSGYFLQ
Sbjct: 182 GSLLFFFALFLSGYFLQ 198

[Close]

BLAST of Cp4.1LG11g09830 vs. TrEMBL
Match: A0A0A0LJE4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G012140 PE=4 SV=1)

HSP 1 Score: 332.8 bits (852), Expect = 2.9e-88
Identity = 169/200 (84.50%), Postives = 179/200 (89.50%), Query Frame = 1


Query: 4   AAYASARPT-LSFHLSQPSVPSPRFNFKPPL---VAFPPLQRSAAARPIPIFTLNSIDVS 63
           A Y+SARPT LSFHLSQPS+P PRFNFKPP+    A PPL RS+AARPI IFTLNSIDVS
Sbjct: 2   AVYSSARPTTLSFHLSQPSLPIPRFNFKPPIPATAAIPPLLRSSAARPISIFTLNSIDVS 61

Query: 64  KEDKPTSEDPDLAAVVGEEAAEAAEEKLDRRRMEEKFAVLNTGIYECRSCGHKFDEAVGD 123
           KEDKPTS+DP+    +   A E  EEK D+RR+EEKFAVLNTGIYECRSCGHKFDEAVGD
Sbjct: 62  KEDKPTSDDPNTPVPLPVVAVEEEEEKFDKRRLEEKFAVLNTGIYECRSCGHKFDEAVGD 121

Query: 124 PTYPIAPGLPFEQLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGNTLTSGQKAV 183
           PTYPIAPGLPFEQLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGNTLTSGQKAV
Sbjct: 122 PTYPIAPGLPFEQLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGNTLTSGQKAV 181

Query: 184 LIYGTLFFFFALFLSGYFLQ 200
           LIYG+LFFFFALFLSGYFLQ
Sbjct: 182 LIYGSLFFFFALFLSGYFLQ 201

[Close]

BLAST of Cp4.1LG11g09830 vs. TrEMBL
Match: F6HTU5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0030g01590 PE=4 SV=1)

HSP 1 Score: 251.1 bits (640), Expect = 1.1e-63
Identity = 132/202 (65.35%), Postives = 151/202 (74.75%), Query Frame = 1


Query: 5   AYASARPTLSFHLS------QPSVPSPRFNFKPPLVAFPPLQRSAAARPIPI-FTLNSID 64
           A A+ RPT SFHLS       P  P P   F P L   P +  SA  +P    F+  S+D
Sbjct: 2   ACATTRPTFSFHLSTTLPQQSPPKPKPHLTFPPHLPKIPSI--SALHKPPKAQFSSRSVD 61

Query: 65  VSKEDKPTSEDPDLAAVVGEEAAEAAEEKLDRRRMEEKFAVLNTGIYECRSCGHKFDEAV 124
           VSKEDKPTSE PD +    +   +  E   D+RR+EEKFAVLNTGIYECRSCG+K+DEA 
Sbjct: 62  VSKEDKPTSEQPDSSTPTSDSPPQEPEN-FDKRRLEEKFAVLNTGIYECRSCGYKYDEAA 121

Query: 125 GDPTYPIAPGLPFEQLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGNTLTSGQK 184
           GDP+YPI PGL F++LP+DWRCPTCGAA+SFFESKSVEIAGFAQNQQ+GLGGNTLTSGQK
Sbjct: 122 GDPSYPIPPGLQFDKLPDDWRCPTCGAARSFFESKSVEIAGFAQNQQFGLGGNTLTSGQK 181

Query: 185 AVLIYGTLFFFFALFLSGYFLQ 200
           AVLIYG+L FFF LFLSGYFLQ
Sbjct: 182 AVLIYGSLLFFFVLFLSGYFLQ 200

[Close]

BLAST of Cp4.1LG11g09830 vs. TrEMBL
Match: M5W043_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011413mg PE=4 SV=1)

HSP 1 Score: 244.2 bits (622), Expect = 1.3e-61
Identity = 135/210 (64.29%), Postives = 151/210 (71.90%), Query Frame = 1


Query: 5   AYASARPTLSFHLS----QPSVPSPRFNFKPP--LVAFPPLQRSAAARPIPI--FTLNSI 64
           A A+ RPT SFHLS    Q S P P+  F  P  L   P +  S   +P      T NSI
Sbjct: 2   ACATTRPTFSFHLSTSFSQHSHPKPKTQFTNPTLLPKIPSISLSLTHKPHKPNNLTTNSI 61

Query: 65  DVSKEDKPTSEDPDLAAVVG-------EEAAEAAEEKLDRRRMEEKFAVLNTGIYECRSC 124
           DVSKEDKPTS++P               E  EAAE   D+RR+EEKFAVLNTGIYECRSC
Sbjct: 62  DVSKEDKPTSDEPASPPPTSYIEPEPEPEQEEAAETTFDKRRLEEKFAVLNTGIYECRSC 121

Query: 125 GHKFDEAVGDPTYPIAPGLPFEQLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGG 184
           G+K+DEAVGDP+YPI PGL F++LPEDWRCPTCGAA+SFF SKSVEIAGFAQNQQ+GLGG
Sbjct: 122 GYKYDEAVGDPSYPIPPGLQFDKLPEDWRCPTCGAAQSFFVSKSVEIAGFAQNQQFGLGG 181

Query: 185 NTLTSGQKAVLIYGTLFFFFALFLSGYFLQ 200
           N LTSGQKAVLI+G LF FF LFLSGYFLQ
Sbjct: 182 NALTSGQKAVLIFGGLFLFFVLFLSGYFLQ 211

[Close]

BLAST of Cp4.1LG11g09830 vs. TrEMBL
Match: W9R6S1_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_006182 PE=4 SV=1)

HSP 1 Score: 243.8 bits (621), Expect = 1.8e-61
Identity = 135/211 (63.98%), Postives = 154/211 (72.99%), Query Frame = 1


Query: 5   AYASARPTLSFHLSQP-----SVPS--PRFNFKPPLVAFPP-----LQRSAAARPIPIFT 64
           A A+ RPT SFH+S       S+P   P     P L+   P     L + A  +P P F 
Sbjct: 2   ACATTRPTFSFHISTSFSQTCSLPKSKPTHFSNPTLLPKIPSFSLSLPQKALNKP-PKFI 61

Query: 65  LNSIDVSKEDKPTSEDPDLAAVVGEEAAEAAEEK----LDRRRMEEKFAVLNTGIYECRS 124
            NSIDVSKEDKPTS+         EE  E  +E+     D+RR+EEKFAVLNTGIYECRS
Sbjct: 62  TNSIDVSKEDKPTSDQTSSTPPQVEEQPEKEQEQEQDTFDKRRLEEKFAVLNTGIYECRS 121

Query: 125 CGHKFDEAVGDPTYPIAPGLPFEQLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLG 184
           CG+K+DEAVGDP+YPI PGLPFE+LPEDWRCPTCGA++SFFESKSVEIAGFAQNQQ+GLG
Sbjct: 122 CGYKYDEAVGDPSYPIPPGLPFEKLPEDWRCPTCGASQSFFESKSVEIAGFAQNQQFGLG 181

Query: 185 GNTLTSGQKAVLIYGTLFFFFALFLSGYFLQ 200
           GN LTSGQKA+LIYGTLF FF LFLSGYFLQ
Sbjct: 182 GNALTSGQKAILIYGTLFLFFVLFLSGYFLQ 211

[Close]

BLAST of Cp4.1LG11g09830 vs. TAIR10
Match: AT1G54500.1 (AT1G54500.1 Rubredoxin-like superfamily protein)

HSP 1 Score: 199.9 bits (507), Expect = 1.5e-51
Identity = 92/123 (74.80%), Postives = 107/123 (86.99%), Query Frame = 1


Query: 77  EEAAEAAEEKLDRRRMEEKFAVLNTGIYECRSCGHKFDEAVGDPTYPIAPGLPFEQLPED 136
           E   +  E+ +++RRMEEKFAVLNTGIYECRSCG+K+DE+ GDP+YPI PG  F++LPED
Sbjct: 73  ETETKEVEDTIEKRRMEEKFAVLNTGIYECRSCGYKYDESAGDPSYPIPPGFQFDKLPED 132

Query: 137 WRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGNTLTSGQKAVLIYGTLFFFFALFLSGY 196
           WRCPTCGAA+SFFESK VEIAGFAQNQQYGLGGN LTSGQK  LI+G+L  FFALFLSGY
Sbjct: 133 WRCPTCGAAQSFFESKMVEIAGFAQNQQYGLGGNALTSGQKTGLIFGSLLLFFALFLSGY 192

Query: 197 FLQ 200
           F+Q
Sbjct: 193 FIQ 195

[Close]

BLAST of Cp4.1LG11g09830 vs. NCBI nr
Match: gi|307136059|gb|ADN33910.1| (rubredoxin [Cucumis melo subsp. melo])

HSP 1 Score: 334.0 bits (855), Expect = 1.8e-88
Identity = 167/197 (84.77%), Postives = 178/197 (90.36%), Query Frame = 1


Query: 4   AAYASARPTLSFHLSQPSVPSPRFNFKPPLVA-FPPLQRSAAARPIPIFTLNSIDVSKED 63
           A Y+SARPTLSFHLSQPS+P PRFNFKPP+ A  PPLQR +AARPI IFTLNSIDVSKED
Sbjct: 2   AVYSSARPTLSFHLSQPSLPIPRFNFKPPVAATIPPLQRLSAARPISIFTLNSIDVSKED 61

Query: 64  KPTSEDPDLAAVVGEEAAEAAEEKLDRRRMEEKFAVLNTGIYECRSCGHKFDEAVGDPTY 123
           KPTS+DP+  +     A E  EEK D+RR+EE+FAVLNTGIYECRSCGHKFDEAVGDPTY
Sbjct: 62  KPTSDDPNTPSPPPVVAVEKEEEKFDKRRLEERFAVLNTGIYECRSCGHKFDEAVGDPTY 121

Query: 124 PIAPGLPFEQLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGNTLTSGQKAVLIY 183
           PIAPGLPFEQLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGNTLTSGQKAVLIY
Sbjct: 122 PIAPGLPFEQLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGNTLTSGQKAVLIY 181

Query: 184 GTLFFFFALFLSGYFLQ 200
           G+L FFFALFLSGYFLQ
Sbjct: 182 GSLLFFFALFLSGYFLQ 198

[Close]

BLAST of Cp4.1LG11g09830 vs. NCBI nr
Match: gi|778666589|ref|XP_004139218.2| (PREDICTED: uncharacterized protein LOC101219075 [Cucumis sativus])

HSP 1 Score: 332.8 bits (852), Expect = 4.1e-88
Identity = 169/200 (84.50%), Postives = 179/200 (89.50%), Query Frame = 1


Query: 4   AAYASARPT-LSFHLSQPSVPSPRFNFKPPL---VAFPPLQRSAAARPIPIFTLNSIDVS 63
           A Y+SARPT LSFHLSQPS+P PRFNFKPP+    A PPL RS+AARPI IFTLNSIDVS
Sbjct: 2   AVYSSARPTTLSFHLSQPSLPIPRFNFKPPIPATAAIPPLLRSSAARPISIFTLNSIDVS 61

Query: 64  KEDKPTSEDPDLAAVVGEEAAEAAEEKLDRRRMEEKFAVLNTGIYECRSCGHKFDEAVGD 123
           KEDKPTS+DP+    +   A E  EEK D+RR+EEKFAVLNTGIYECRSCGHKFDEAVGD
Sbjct: 62  KEDKPTSDDPNTPVPLPVVAVEEEEEKFDKRRLEEKFAVLNTGIYECRSCGHKFDEAVGD 121

Query: 124 PTYPIAPGLPFEQLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGNTLTSGQKAV 183
           PTYPIAPGLPFEQLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGNTLTSGQKAV
Sbjct: 122 PTYPIAPGLPFEQLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGNTLTSGQKAV 181

Query: 184 LIYGTLFFFFALFLSGYFLQ 200
           LIYG+LFFFFALFLSGYFLQ
Sbjct: 182 LIYGSLFFFFALFLSGYFLQ 201

[Close]

BLAST of Cp4.1LG11g09830 vs. NCBI nr
Match: gi|659071594|ref|XP_008460788.1| (PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103499548 [Cucumis melo])

HSP 1 Score: 266.5 bits (680), Expect = 3.6e-68
Identity = 130/149 (87.25%), Postives = 137/149 (91.95%), Query Frame = 1


Query: 51  FTLNSIDVSKEDKPTSEDPDLAAVVGEEAAEAAEEKLDRRRMEEKFAVLNTGIYECRSCG 110
           FTLNSIDVSKEDKPTS+DP+  +     A E  EEK D+RR+EE+FAVLNTGIYECRSCG
Sbjct: 54  FTLNSIDVSKEDKPTSDDPNTPSPPPVVAVEKEEEKFDKRRLEERFAVLNTGIYECRSCG 113

Query: 111 HKFDEAVGDPTYPIAPGLPFEQLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGN 170
           HKFDEAVGDPTYPIAPGLPFEQLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGN
Sbjct: 114 HKFDEAVGDPTYPIAPGLPFEQLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGN 173

Query: 171 TLTSGQKAVLIYGTLFFFFALFLSGYFLQ 200
           TLTSGQKAVLIYG+L FFFALFLSGYFLQ
Sbjct: 174 TLTSGQKAVLIYGSLLFFFALFLSGYFLQ 202

[Close]

BLAST of Cp4.1LG11g09830 vs. NCBI nr
Match: gi|225451241|ref|XP_002276406.1| (PREDICTED: uncharacterized protein LOC100259018 [Vitis vinifera])

HSP 1 Score: 251.1 bits (640), Expect = 1.6e-63
Identity = 132/202 (65.35%), Postives = 151/202 (74.75%), Query Frame = 1


Query: 5   AYASARPTLSFHLS------QPSVPSPRFNFKPPLVAFPPLQRSAAARPIPI-FTLNSID 64
           A A+ RPT SFHLS       P  P P   F P L   P +  SA  +P    F+  S+D
Sbjct: 2   ACATTRPTFSFHLSTTLPQQSPPKPKPHLTFPPHLPKIPSI--SALHKPPKAQFSSRSVD 61

Query: 65  VSKEDKPTSEDPDLAAVVGEEAAEAAEEKLDRRRMEEKFAVLNTGIYECRSCGHKFDEAV 124
           VSKEDKPTSE PD +    +   +  E   D+RR+EEKFAVLNTGIYECRSCG+K+DEA 
Sbjct: 62  VSKEDKPTSEQPDSSTPTSDSPPQEPEN-FDKRRLEEKFAVLNTGIYECRSCGYKYDEAA 121

Query: 125 GDPTYPIAPGLPFEQLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGNTLTSGQK 184
           GDP+YPI PGL F++LP+DWRCPTCGAA+SFFESKSVEIAGFAQNQQ+GLGGNTLTSGQK
Sbjct: 122 GDPSYPIPPGLQFDKLPDDWRCPTCGAARSFFESKSVEIAGFAQNQQFGLGGNTLTSGQK 181

Query: 185 AVLIYGTLFFFFALFLSGYFLQ 200
           AVLIYG+L FFF LFLSGYFLQ
Sbjct: 182 AVLIYGSLLFFFVLFLSGYFLQ 200

[Close]

BLAST of Cp4.1LG11g09830 vs. NCBI nr
Match: gi|1009117729|ref|XP_015875473.1| (PREDICTED: uncharacterized protein LOC107412257 [Ziziphus jujuba])

HSP 1 Score: 250.4 bits (638), Expect = 2.7e-63
Identity = 135/209 (64.59%), Postives = 155/209 (74.16%), Query Frame = 1


Query: 5   AYASARPTLSFHLS----QPSVPSPRFNFKPP--LVAFPPLQRSAAARPIPIFTLNSIDV 64
           A ++ RPT SFHLS    QPS+P  +  F  P  +  FP +    +++ +  F  NSIDV
Sbjct: 2   ACSATRPTFSFHLSTSFSQPSLPKSKTLFSNPSLISKFPTISLHKSSKHLK-FVSNSIDV 61

Query: 65  SKEDKPTSED--------PDLAAVVGEEAAEAAEEKLDRRRMEEKFAVLNTGIYECRSCG 124
           SKEDKPT+E+        P   +       E  E K D RR+EEKFAVLNTGIYECRSCG
Sbjct: 62  SKEDKPTAENQPSSQESQPPPPSSPSPPPPEEGEVKFDNRRLEEKFAVLNTGIYECRSCG 121

Query: 125 HKFDEAVGDPTYPIAPGLPFEQLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGN 184
           +K+DEAVGDP YPI PGL F++LPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQ+GLGGN
Sbjct: 122 YKYDEAVGDPAYPIPPGLQFDKLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQFGLGGN 181

Query: 185 TLTSGQKAVLIYGTLFFFFALFLSGYFLQ 200
           TLTSGQKAVLIYG+LFFFF LFLSGYFLQ
Sbjct: 182 TLTSGQKAVLIYGSLFFFFVLFLSGYFLQ 209

The following BLAST results are available for this feature:

BLAST of Cp4.1LG11g09830 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RUBR_SYNY3	3.1e-19	41.96	Rubredoxin OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=rub PE=3 SV=1	[more]
RUBR_ANAVT	2.2e-17	45.79	Rubredoxin OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=rub PE=3 SV=...	[more]
RUBR_NOSS1	3.8e-17	45.79	Rubredoxin OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=rub PE=3 SV=2	[more]
RUBR_DESGI	9.1e-11	54.00	Rubredoxin OS=Desulfovibrio gigas PE=1 SV=1	[more]
HRB_MOOTA	2.0e-10	55.32	High molecular weight rubredoxin OS=Moorella thermoacetica (strain ATCC 39073) G...	[more]

BLAST of Cp4.1LG11g09830 vs. TrEMBL


Match Name	E-value	Identity	Description
E5GBR8_CUCME	1.3e-88	84.77	Rubredoxin OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
A0A0A0LJE4_CUCSA	2.9e-88	84.50	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G012140 PE=4 SV=1	[more]
F6HTU5_VITVI	1.1e-63	65.35	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0030g01590 PE=4 SV=...	[more]
M5W043_PRUPE	1.3e-61	64.29	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011413mg PE=4 SV=1	[more]
W9R6S1_9ROSA	1.8e-61	63.98	Uncharacterized protein OS=Morus notabilis GN=L484_006182 PE=4 SV=1	[more]

BLAST of Cp4.1LG11g09830 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G54500.1	1.5e-51	74.80	Rubredoxin-like superfamily protein	[more]

BLAST of Cp4.1LG11g09830 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|307136059\|gb\|ADN33910.1\|	1.8e-88	84.77	rubredoxin [Cucumis melo subsp. melo]	[more]
gi\|778666589\|ref\|XP_004139218.2\|	4.1e-88	84.50	PREDICTED: uncharacterized protein LOC101219075 [Cucumis sativus]	[more]
gi\|659071594\|ref\|XP_008460788.1\|	3.6e-68	87.25	PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103499548 [Cucumis me...	[more]
gi\|225451241\|ref\|XP_002276406.1\|	1.6e-63	65.35	PREDICTED: uncharacterized protein LOC100259018 [Vitis vinifera]	[more]
gi\|1009117729\|ref\|XP_015875473.1\|	2.7e-63	64.59	PREDICTED: uncharacterized protein LOC107412257 [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005506	iron ion binding
GO:0046872	metal ion binding

Vocabulary: **INTERPRO**
Term	Definition
IPR024935	Rubredoxin_dom
IPR024934	Rubredoxin-like_dom
IPR018527	Rubredoxin_Fe_BS
IPR004039	Rubredoxin-type fold

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009987	cellular process
biological_process	GO:0044699	single-organism process
biological_process	GO:0030154	cell differentiation
biological_process	GO:0009965	leaf morphogenesis
biological_process	GO:0009773	photosynthetic electron transport in photosystem I
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
biological_process	GO:0044237	cellular metabolic process
biological_process	GO:0044763	single-organism cellular process
biological_process	GO:0044767	single-organism developmental process
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0005506	iron ion binding
molecular_function	GO:0046872	metal ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG11g09830.1	Cp4.1LG11g09830.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004039	Rubredoxin-type fold	GENE3D	G3DSA:2.20.28.10		coord: 100..153 score: 4.2
IPR018527	Rubredoxin, iron-binding site	PROSITE	PS00202	RUBREDOXIN	coord: 133..143 scor
IPR024934	Rubredoxin-like domain	PROFILE	PS50903	RUBREDOXIN_LIKE	coord: 101..152 score: 13
IPR024935	Rubredoxin domain	PRINTS	PR00163	RUBREDOXIN	coord: 103..119 score: 4.1E-8coord: 133..149 score: 4.
IPR024935	Rubredoxin domain	PFAM	PF00301	Rubredoxin	coord: 104..149 score: 1.4
None	No IPR available	PANTHER	PTHR10909	ELECTRON TRANSPORT OXIDOREDUCTASE	coord: 79..172 score: 2.1
None	No IPR available	unknown	SSF57802	Rubredoxin-like	coord: 100..166 score: 7.91

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG11g09830	Cucsa.133480	Cucumber (Gy14) v1	cgycpeB0351
Cp4.1LG11g09830	CmaCh05G011830	Cucurbita maxima (Rimu)	cmacpeB767
Cp4.1LG11g09830	CmoCh05G012070	Cucurbita moschata (Rifu)	cmocpeB721
Cp4.1LG11g09830	Cla019828	Watermelon (97103) v1	cpewmB113
Cp4.1LG11g09830	Csa2G012140	Cucumber (Chinese Long) v2	cpecuB103
Cp4.1LG11g09830	MELO3C004358	Melon (DHL92) v3.5.1	cpemeB099
Cp4.1LG11g09830	ClCG02G016370	Watermelon (Charleston Gray)	cpewcgB104
Cp4.1LG11g09830	CSPI02G03220	Wild cucumber (PI 183967)	cpecpiB100
Cp4.1LG11g09830	Lsi11G004690	Bottle gourd (USVL1VR-Ls)	cpelsiB074
Cp4.1LG11g09830	MELO3C004358.2	Melon (DHL92) v3.6.1	cpemedB123
Cp4.1LG11g09830	CsaV3_2G004360	Cucumber (Chinese Long) v3	cpecucB0114
Cp4.1LG11g09830	Bhi06G001497	Wax gourd	cpewgoB0114
Cp4.1LG11g09830	Carg23432	Silver-seed gourd	carcpeB0410

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG11g09830	Cucurbita pepo (Zucchini)	cpecpeB139
Cp4.1LG11g09830	Cucurbita maxima (Rimu)	cmacpeB171
Cp4.1LG11g09830	Cucurbita moschata (Rifu)	cmocpeB147
Cp4.1LG11g09830	Cucumber (Gy14) v2	cgybcpeB168
Cp4.1LG11g09830	Silver-seed gourd	carcpeB1005