Carg23432 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg23432
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Rubredoxin
Location	Cucurbita_argyrosperma_scaffold_335 : 157889 .. 158485 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGCTGCTGCTTATGCCTCTGCAAGACCCACTCTCTCCTTCCATCTCTCTCAACCCTCCGTTCCCAGTCCCAGATTCAATTTCAAACCCCCCCTCGTTGCCTTTCCGCCGTTGCAGAGATCGGCGGCGGCGAGACCCATCCCCATTTTCACCCTCAACTCCATCGACGTCTCCAAAGAGGACAAACCCACTTCGGACGACCCGGATTTCGCCGCGGTAGTTGGGGAAGAGGCGGCGGCGGCGGAGGAGAAGTTGGACAGGCGGCGAATGGAGGAGAAATTTGCAGTGCTGAACACGGGGATATATGAGTGCAGGTCGTGTGGGCATAAGTTCGACGAGGCGGTTGGGGATCCGACGTATCCGATAGCGCCGGGGCTGCCGTTCGAGCAGCTGCCGGAGGACTGGCGGTGCCCGACGTGTGGGGCGGCGAAGAGCTTCTTCGAGAGTAAGAGTGTGGAGATAGCGGGGTTTGCTCAGAATCAGCAGTACGGACTTGGAGGGAACACTCTGACTTCAGGTCAGAAGGCAGTGCTCATCTATGGAACCTTGTTCTTCTTCTTTGCTTTGTTCCTCTCTGGCTATTTCTTGCAATGA

mRNA sequence

ATGGCTGCTGCTGCTTATGCCTCTGCAAGACCCACTCTCTCCTTCCATCTCTCTCAACCCTCCGTTCCCAGTCCCAGATTCAATTTCAAACCCCCCCTCGTTGCCTTTCCGCCGTTGCAGAGATCGGCGGCGGCGAGACCCATCCCCATTTTCACCCTCAACTCCATCGACGTCTCCAAAGAGGACAAACCCACTTCGGACGACCCGGATTTCGCCGCGGTAGTTGGGGAAGAGGCGGCGGCGGCGGAGGAGAAGTTGGACAGGCGGCGAATGGAGGAGAAATTTGCAGTGCTGAACACGGGGATATATGAGTGCAGGTCGTGTGGGCATAAGTTCGACGAGGCGGTTGGGGATCCGACGTATCCGATAGCGCCGGGGCTGCCGTTCGAGCAGCTGCCGGAGGACTGGCGGTGCCCGACGTGTGGGGCGGCGAAGAGCTTCTTCGAGAGTAAGAGTGTGGAGATAGCGGGGTTTGCTCAGAATCAGCAGTACGGACTTGGAGGGAACACTCTGACTTCAGGTCAGAAGGCAGTGCTCATCTATGGAACCTTGTTCTTCTTCTTTGCTTTGTTCCTCTCTGGCTATTTCTTGCAATGA

Coding sequence (CDS)

ATGGCTGCTGCTGCTTATGCCTCTGCAAGACCCACTCTCTCCTTCCATCTCTCTCAACCCTCCGTTCCCAGTCCCAGATTCAATTTCAAACCCCCCCTCGTTGCCTTTCCGCCGTTGCAGAGATCGGCGGCGGCGAGACCCATCCCCATTTTCACCCTCAACTCCATCGACGTCTCCAAAGAGGACAAACCCACTTCGGACGACCCGGATTTCGCCGCGGTAGTTGGGGAAGAGGCGGCGGCGGCGGAGGAGAAGTTGGACAGGCGGCGAATGGAGGAGAAATTTGCAGTGCTGAACACGGGGATATATGAGTGCAGGTCGTGTGGGCATAAGTTCGACGAGGCGGTTGGGGATCCGACGTATCCGATAGCGCCGGGGCTGCCGTTCGAGCAGCTGCCGGAGGACTGGCGGTGCCCGACGTGTGGGGCGGCGAAGAGCTTCTTCGAGAGTAAGAGTGTGGAGATAGCGGGGTTTGCTCAGAATCAGCAGTACGGACTTGGAGGGAACACTCTGACTTCAGGTCAGAAGGCAGTGCTCATCTATGGAACCTTGTTCTTCTTCTTTGCTTTGTTCCTCTCTGGCTATTTCTTGCAATGA

Protein sequence

MAAAAYASARPTLSFHLSQPSVPSPRFNFKPPLVAFPPLQRSAAARPIPIFTLNSIDVSKEDKPTSDDPDFAAVVGEEAAAAEEKLDRRRMEEKFAVLNTGIYECRSCGHKFDEAVGDPTYPIAPGLPFEQLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGNTLTSGQKAVLIYGTLFFFFALFLSGYFLQ

Homology

[Close]

BLAST of Carg23432 vs. NCBI nr
Match: XP_022946609.1 (uncharacterized protein LOC111450624 [Cucurbita moschata])

HSP 1 Score: 384.4 bits (986), Expect = 2.3e-103
Identity = 198/198 (100.00%), Postives = 198/198 (100.00%), Query Frame = 0


Query: 1   MAAAAYASARPTLSFHLSQPSVPSPRFNFKPPLVAFPPLQRSAAARPIPIFTLNSIDVSK 60
           MAAAAYASARPTLSFHLSQPSVPSPRFNFKPPLVAFPPLQRSAAARPIPIFTLNSIDVSK
Sbjct: 1   MAAAAYASARPTLSFHLSQPSVPSPRFNFKPPLVAFPPLQRSAAARPIPIFTLNSIDVSK 60

Query: 61  EDKPTSDDPDFAAVVGEXXXXXXXKLDRRRMEEKFAVLNTGIYECRSCGHKFDEAVGDPT 120
           EDKPTSDDPDFAAVVGEXXXXXXXKLDRRRMEEKFAVLNTGIYECRSCGHKFDEAVGDPT
Sbjct: 61  EDKPTSDDPDFAAVVGEXXXXXXXKLDRRRMEEKFAVLNTGIYECRSCGHKFDEAVGDPT 120

Query: 121 YPIAPGLPFEQLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGNTLTSGQKAVLI 180
           YPIAPGLPFEQLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGNTLTSGQKAVLI
Sbjct: 121 YPIAPGLPFEQLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGNTLTSGQKAVLI 180

Query: 181 YGTLFFFFALFLSGYFLQ 199
           YGTLFFFFALFLSGYFLQ
Sbjct: 181 YGTLFFFFALFLSGYFLQ 198

[Close]

BLAST of Carg23432 vs. NCBI nr
Match: XP_023545844.1 (uncharacterized protein LOC111805157 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 375.9 bits (964), Expect = 8.2e-101
Identity = 189/199 (94.97%), Postives = 190/199 (95.48%), Query Frame = 0


Query: 1   MAAAAYASARPTLSFHLSQPSVPSPRFNFKPPLVAFPPLQRSAAARPIPIFTLNSIDVSK 60
           MAAAAYASARPTLSFHLSQPSVPSPRFNFKPPLVAFPPLQRSAAARPIPIFTLNSIDVSK
Sbjct: 1   MAAAAYASARPTLSFHLSQPSVPSPRFNFKPPLVAFPPLQRSAAARPIPIFTLNSIDVSK 60

Query: 61  EDKPTSDDPDFAAVVG-EXXXXXXXKLDRRRMEEKFAVLNTGIYECRSCGHKFDEAVGDP 120
           EDKPTS+DPD AAVVG E       KLDRRRMEEKFAVLNTGIYECRSCGHKFDEAVGDP
Sbjct: 61  EDKPTSEDPDLAAVVGEEAAEAAEEKLDRRRMEEKFAVLNTGIYECRSCGHKFDEAVGDP 120

Query: 121 TYPIAPGLPFEQLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGNTLTSGQKAVL 180
           TYPIAPGLPFEQLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGNTLTSGQKAVL
Sbjct: 121 TYPIAPGLPFEQLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGNTLTSGQKAVL 180

Query: 181 IYGTLFFFFALFLSGYFLQ 199
           IYGTLFFFFALFLSGYFLQ
Sbjct: 181 IYGTLFFFFALFLSGYFLQ 199

[Close]

BLAST of Carg23432 vs. NCBI nr
Match: XP_022999262.1 (uncharacterized protein LOC111493686 [Cucurbita maxima])

HSP 1 Score: 368.2 bits (944), Expect = 1.7e-98
Identity = 184/196 (93.88%), Postives = 186/196 (94.90%), Query Frame = 0


Query: 3   AAAYASARPTLSFHLSQPSVPSPRFNFKPPLVAFPPLQRSAAARPIPIFTLNSIDVSKED 62
           A +YASARPTLSFHL QPSVPSPRFNFKPPLVAFPPLQRSAAARPIPIFTLNSIDVSKED
Sbjct: 2   ATSYASARPTLSFHLYQPSVPSPRFNFKPPLVAFPPLQRSAAARPIPIFTLNSIDVSKED 61

Query: 63  KPTSDDPDFAAVVGEXXXXXXXKLDRRRMEEKFAVLNTGIYECRSCGHKFDEAVGDPTYP 122
           KPTSDDPD AAVVGE       KLDRRR+EEKFAVLNTGIYECRSCGHKFDEAVGDPTYP
Sbjct: 62  KPTSDDPDLAAVVGE-EEAAEEKLDRRRIEEKFAVLNTGIYECRSCGHKFDEAVGDPTYP 121

Query: 123 IAPGLPFEQLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGNTLTSGQKAVLIYG 182
           IAPGLPFEQLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGNTLTSGQKAVLIYG
Sbjct: 122 IAPGLPFEQLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGNTLTSGQKAVLIYG 181

Query: 183 TLFFFFALFLSGYFLQ 199
           TLFFFFALFLSGYFLQ
Sbjct: 182 TLFFFFALFLSGYFLQ 196

[Close]

BLAST of Carg23432 vs. NCBI nr
Match: ADN33910.1 (rubredoxin [Cucumis melo subsp. melo])

HSP 1 Score: 326.6 bits (836), Expect = 5.7e-86
Identity = 171/197 (86.80%), Postives = 180/197 (91.37%), Query Frame = 0


Query: 4   AAYASARPTLSFHLSQPSVPSPRFNFKPPLVA-FPPLQRSAAARPIPIFTLNSIDVSKED 63
           A Y+SARPTLSFHLSQPS+P PRFNFKPP+ A  PPLQR +AARPI IFTLNSIDVSKED
Sbjct: 2   AVYSSARPTLSFHLSQPSLPIPRFNFKPPVAATIPPLQRLSAARPISIFTLNSIDVSKED 61

Query: 64  KPTSDDPDF-AAVVGEXXXXXXXKLDRRRMEEKFAVLNTGIYECRSCGHKFDEAVGDPTY 123
           KPTSDDP+        XXXXXXXK D+RR+EE+FAVLNTGIYECRSCGHKFDEAVGDPTY
Sbjct: 62  KPTSDDPNTPXXXXXXXXXXXXXKFDKRRLEERFAVLNTGIYECRSCGHKFDEAVGDPTY 121

Query: 124 PIAPGLPFEQLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGNTLTSGQKAVLIY 183
           PIAPGLPFEQLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGNTLTSGQKAVLIY
Sbjct: 122 PIAPGLPFEQLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGNTLTSGQKAVLIY 181

Query: 184 GTLFFFFALFLSGYFLQ 199
           G+L FFFALFLSGYFLQ
Sbjct: 182 GSLLFFFALFLSGYFLQ 198

[Close]

BLAST of Carg23432 vs. NCBI nr
Match: XP_016901839.1 (PREDICTED: uncharacterized protein LOC103499548 [Cucumis melo] >XP_016901842.1 PREDICTED: uncharacterized protein LOC103499548 [Cucumis melo])

HSP 1 Score: 326.6 bits (836), Expect = 5.7e-86
Identity = 171/197 (86.80%), Postives = 180/197 (91.37%), Query Frame = 0


Query: 4   AAYASARPTLSFHLSQPSVPSPRFNFKPPLVA-FPPLQRSAAARPIPIFTLNSIDVSKED 63
           A Y+SARPTLSFHLSQPS+P PRFNFKPP+ A  PPLQR +AARPI IFTLNSIDVSKED
Sbjct: 80  AVYSSARPTLSFHLSQPSLPIPRFNFKPPVAATIPPLQRLSAARPISIFTLNSIDVSKED 139

Query: 64  KPTSDDPDF-AAVVGEXXXXXXXKLDRRRMEEKFAVLNTGIYECRSCGHKFDEAVGDPTY 123
           KPTSDDP+        XXXXXXXK D+RR+EE+FAVLNTGIYECRSCGHKFDEAVGDPTY
Sbjct: 140 KPTSDDPNTPXXXXXXXXXXXXXKFDKRRLEERFAVLNTGIYECRSCGHKFDEAVGDPTY 199

Query: 124 PIAPGLPFEQLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGNTLTSGQKAVLIY 183
           PIAPGLPFEQLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGNTLTSGQKAVLIY
Sbjct: 200 PIAPGLPFEQLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGNTLTSGQKAVLIY 259

Query: 184 GTLFFFFALFLSGYFLQ 199
           G+L FFFALFLSGYFLQ
Sbjct: 260 GSLLFFFALFLSGYFLQ 276

[Close]

BLAST of Carg23432 vs. TAIR10
Match: AT1G54500.1 (Rubredoxin-like superfamily protein)

HSP 1 Score: 199.5 bits (506), Expect = 1.9e-51
Identity = 90/113 (79.65%), Postives = 103/113 (91.15%), Query Frame = 0


Query: 86  LDRRRMEEKFAVLNTGIYECRSCGHKFDEAVGDPTYPIAPGLPFEQLPEDWRCPTCGAAK 145
           +++RRMEEKFAVLNTGIYECRSCG+K+DE+ GDP+YPI PG  F++LPEDWRCPTCGAA+
Sbjct: 83  IEKRRMEEKFAVLNTGIYECRSCGYKYDESAGDPSYPIPPGFQFDKLPEDWRCPTCGAAQ 142

Query: 146 SFFESKSVEIAGFAQNQQYGLGGNTLTSGQKAVLIYGTLFFFFALFLSGYFLQ 199
           SFFESK VEIAGFAQNQQYGLGGN LTSGQK  LI+G+L  FFALFLSGYF+Q
Sbjct: 143 SFFESKMVEIAGFAQNQQYGLGGNALTSGQKTGLIFGSLLLFFALFLSGYFIQ 195

[Close]

BLAST of Carg23432 vs. Swiss-Prot
Match: sp|P73068|RUBR_SYNY3 (Rubredoxin OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=rub PE=3 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 1.8e-19
Identity = 47/112 (41.96%), Postives = 69/112 (61.61%), Query Frame = 0


Query: 86  LDRRRMEEKFAVLNTGIYECRSCGHKFDEAVGDPTYPIAPGLPFEQLPEDWRCPTCGAAK 145
           +  R  E+  A L +  +ECR+CG+ +  + GD    ++PG PFE LP +W+CP CGA +
Sbjct: 1   MSERPPEKTLAELASPNHECRACGYVYIPSQGDQKTSVSPGTPFEALPLNWKCPVCGAPR 60

Query: 146 SFFESKSVEIA--GFAQNQQYGLGGNTLTSGQKAVLIYGTLFFFFALFLSGY 196
           ++F S     A  GFA+N  YG G N ++ G+K +LI+G+LF  F  FLS Y
Sbjct: 61  NYFISTGETDAPSGFAENLNYGFGFNRMSGGKKNLLIFGSLFVIFLFFLSLY 112

[Close]

BLAST of Carg23432 vs. Swiss-Prot
Match: sp|Q9XBL8|RUBR_ANAVT (Rubredoxin OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) OX=240292 GN=rub PE=3 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 1.7e-17
Identity = 49/107 (45.79%), Postives = 65/107 (60.75%), Query Frame = 0


Query: 96  AVLNTGI--YECRSCGHKFDEAVGDPTYPIAPGLPFEQLPEDWRCPTCGAAKSFFES--K 155
           AV NT +  +ECRSCG+ ++   GD  + IAP  PF +LP +WRCP C A K+ F +   
Sbjct: 5   AVENTVLDRFECRSCGYVYEPEKGDSKHDIAPETPFAELPINWRCPVCTAKKAAFSNIGP 64

Query: 156 SVEIAGFAQNQQYGLGGNTLTSGQKAVLIYGTLFFFFALFLSGYFLQ 199
           +   +GF +N  YGLG N LT  QK +LI+G L   F  F+S Y LQ
Sbjct: 65  AGTASGFRENLGYGLGVNKLTPAQKNILIFGALALGFLFFISLYGLQ 111

[Close]

BLAST of Carg23432 vs. Swiss-Prot
Match: sp|Q9WWN1|RUBR_NOSS1 (Rubredoxin OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576) OX=103690 GN=rub PE=3 SV=2)

HSP 1 Score: 90.1 bits (222), Expect = 2.9e-17
Identity = 49/107 (45.79%), Postives = 65/107 (60.75%), Query Frame = 0


Query: 96  AVLNTGI--YECRSCGHKFDEAVGDPTYPIAPGLPFEQLPEDWRCPTCGAAKSFFES--K 155
           AV NT +  +ECRSCG+ ++   GD  + IAP  PF +LP +WRCP C A K+ F +   
Sbjct: 5   AVENTVLDRFECRSCGYVYEPEKGDNKHDIAPETPFAELPINWRCPVCTAKKAAFTNIGP 64

Query: 156 SVEIAGFAQNQQYGLGGNTLTSGQKAVLIYGTLFFFFALFLSGYFLQ 199
           +   +GF +N  YGLG N LT  QK +LI+G L   F  F+S Y LQ
Sbjct: 65  AGTASGFRENLGYGLGVNKLTPAQKNILIFGALALGFLFFISLYGLQ 111

[Close]

BLAST of Carg23432 vs. Swiss-Prot
Match: sp|P00270|RUBR_DESGI (Rubredoxin OS=Desulfovibrio gigas OX=879 PE=1 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 9.2e-11
Identity = 27/50 (54.00%), Postives = 33/50 (66.00%), Query Frame = 0


Query: 102 IYECRSCGHKFDEAVGDPTYPIAPGLPFEQLPEDWRCPTCGAAKSFFESK 152
           IY C  CG+++D A GDP   I PG  FE LP+DW CP CGA+K  FE +
Sbjct: 3   IYVCTVCGYEYDPAKGDPDSGIKPGTKFEDLPDDWACPVCGASKDAFEKQ 52

[Close]

BLAST of Carg23432 vs. Swiss-Prot
Match: sp|Q9FDN6|HRB_MOOTA (High molecular weight rubredoxin OS=Moorella thermoacetica (strain ATCC 39073 / JCM 9320) OX=264732 GN=hrb PE=1 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 2.0e-10
Identity = 26/47 (55.32%), Postives = 30/47 (63.83%), Query Frame = 0


Query: 103 YECRSCGHKFDEAVGDPTYPIAPGLPFEQLPEDWRCPTCGAAKSFFE 150
           Y+C  C + +D   GDP + IAPG PF  LPEDW CP CGA K  FE
Sbjct: 181 YQCTICNYVYDPVQGDPEHGIAPGTPFADLPEDWTCPICGAGKDAFE 227

[Close]

BLAST of Carg23432 vs. TrEMBL
Match: tr|A0A1S4E0U3|A0A1S4E0U3_CUCME (uncharacterized protein LOC103499548 OS=Cucumis melo OX=3656 GN=LOC103499548 PE=4 SV=1)

HSP 1 Score: 326.6 bits (836), Expect = 3.8e-86
Identity = 171/197 (86.80%), Postives = 180/197 (91.37%), Query Frame = 0


Query: 4   AAYASARPTLSFHLSQPSVPSPRFNFKPPLVA-FPPLQRSAAARPIPIFTLNSIDVSKED 63
           A Y+SARPTLSFHLSQPS+P PRFNFKPP+ A  PPLQR +AARPI IFTLNSIDVSKED
Sbjct: 80  AVYSSARPTLSFHLSQPSLPIPRFNFKPPVAATIPPLQRLSAARPISIFTLNSIDVSKED 139

Query: 64  KPTSDDPDF-AAVVGEXXXXXXXKLDRRRMEEKFAVLNTGIYECRSCGHKFDEAVGDPTY 123
           KPTSDDP+        XXXXXXXK D+RR+EE+FAVLNTGIYECRSCGHKFDEAVGDPTY
Sbjct: 140 KPTSDDPNTPXXXXXXXXXXXXXKFDKRRLEERFAVLNTGIYECRSCGHKFDEAVGDPTY 199

Query: 124 PIAPGLPFEQLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGNTLTSGQKAVLIY 183
           PIAPGLPFEQLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGNTLTSGQKAVLIY
Sbjct: 200 PIAPGLPFEQLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGNTLTSGQKAVLIY 259

Query: 184 GTLFFFFALFLSGYFLQ 199
           G+L FFFALFLSGYFLQ
Sbjct: 260 GSLLFFFALFLSGYFLQ 276

[Close]

BLAST of Carg23432 vs. TrEMBL
Match: tr|E5GBR8|E5GBR8_CUCME (Rubredoxin OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 326.6 bits (836), Expect = 3.8e-86
Identity = 171/197 (86.80%), Postives = 180/197 (91.37%), Query Frame = 0


Query: 4   AAYASARPTLSFHLSQPSVPSPRFNFKPPLVA-FPPLQRSAAARPIPIFTLNSIDVSKED 63
           A Y+SARPTLSFHLSQPS+P PRFNFKPP+ A  PPLQR +AARPI IFTLNSIDVSKED
Sbjct: 2   AVYSSARPTLSFHLSQPSLPIPRFNFKPPVAATIPPLQRLSAARPISIFTLNSIDVSKED 61

Query: 64  KPTSDDPDF-AAVVGEXXXXXXXKLDRRRMEEKFAVLNTGIYECRSCGHKFDEAVGDPTY 123
           KPTSDDP+        XXXXXXXK D+RR+EE+FAVLNTGIYECRSCGHKFDEAVGDPTY
Sbjct: 62  KPTSDDPNTPXXXXXXXXXXXXXKFDKRRLEERFAVLNTGIYECRSCGHKFDEAVGDPTY 121

Query: 124 PIAPGLPFEQLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGNTLTSGQKAVLIY 183
           PIAPGLPFEQLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGNTLTSGQKAVLIY
Sbjct: 122 PIAPGLPFEQLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGNTLTSGQKAVLIY 181

Query: 184 GTLFFFFALFLSGYFLQ 199
           G+L FFFALFLSGYFLQ
Sbjct: 182 GSLLFFFALFLSGYFLQ 198

[Close]

BLAST of Carg23432 vs. TrEMBL
Match: tr|A0A0A0LJE4|A0A0A0LJE4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G012140 PE=4 SV=1)

HSP 1 Score: 325.1 bits (832), Expect = 1.1e-85
Identity = 173/200 (86.50%), Postives = 182/200 (91.00%), Query Frame = 0


Query: 4   AAYASARP-TLSFHLSQPSVPSPRFNFKPPL---VAFPPLQRSAAARPIPIFTLNSIDVS 63
           A Y+SARP TLSFHLSQPS+P PRFNFKPP+    A PPL RS+AARPI IFTLNSIDVS
Sbjct: 2   AVYSSARPTTLSFHLSQPSLPIPRFNFKPPIPATAAIPPLLRSSAARPISIFTLNSIDVS 61

Query: 64  KEDKPTSDDPDFAAVVG-EXXXXXXXKLDRRRMEEKFAVLNTGIYECRSCGHKFDEAVGD 123
           KEDKPTSDDP+    +   XXXXXXXK D+RR+EEKFAVLNTGIYECRSCGHKFDEAVGD
Sbjct: 62  KEDKPTSDDPNTPVPLPVXXXXXXXXKFDKRRLEEKFAVLNTGIYECRSCGHKFDEAVGD 121

Query: 124 PTYPIAPGLPFEQLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGNTLTSGQKAV 183
           PTYPIAPGLPFEQLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGNTLTSGQKAV
Sbjct: 122 PTYPIAPGLPFEQLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGNTLTSGQKAV 181

Query: 184 LIYGTLFFFFALFLSGYFLQ 199
           LIYG+LFFFFALFLSGYFLQ
Sbjct: 182 LIYGSLFFFFALFLSGYFLQ 201

[Close]

BLAST of Carg23432 vs. TrEMBL
Match: tr|A0A2P6R6A1|A0A2P6R6A1_ROSCH (Putative rubredoxin-type OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr3g0452211 PE=4 SV=1)

HSP 1 Score: 251.1 bits (640), Expect = 2.0e-63
Identity = 129/199 (64.82%), Postives = 153/199 (76.88%), Query Frame = 0


Query: 5   AYASARPTLSFHL----SQPSVPSPRFNFKPPLVAFPPLQRSAAARPIPIFTL-NSIDVS 64
           A A+ RPT SFHL    SQ S P P+  F P +   P +  S   +P    T+ NSIDVS
Sbjct: 2   ACAATRPTFSFHLPTTFSQSSHPKPKTQFLPKI---PRISLSLTHKPSHKLTITNSIDVS 61

Query: 65  KEDKPTSDDPDFAAVVGEXXXXXXXKLDRRRMEEKFAVLNTGIYECRSCGHKFDEAVGDP 124
           KEDKPTSD P+   +          K+D+RR+EEKFAVLNTGIYECRSCG+K+DEAVGDP
Sbjct: 62  KEDKPTSDQPNPPPIDSTDLEQAEPKIDKRRLEEKFAVLNTGIYECRSCGYKYDEAVGDP 121

Query: 125 TYPIAPGLPFEQLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGNTLTSGQKAVL 184
           +YP+ PG+ FE+LPEDWRCPTCGAA+SFF SKSVEIAGFA+NQQ+GLGGN+LTSGQKA+L
Sbjct: 122 SYPLPPGMQFEKLPEDWRCPTCGAAQSFFVSKSVEIAGFAENQQFGLGGNSLTSGQKALL 181

Query: 185 IYGTLFFFFALFLSGYFLQ 199
           I+G+LF FFALFLSGYFLQ
Sbjct: 182 IFGSLFLFFALFLSGYFLQ 197

[Close]

BLAST of Carg23432 vs. TrEMBL
Match: tr|A0A1U8B9X1|A0A1U8B9X1_NELNU (uncharacterized protein LOC104612311 OS=Nelumbo nucifera OX=4432 GN=LOC104612311 PE=4 SV=1)

HSP 1 Score: 247.3 bits (630), Expect = 2.9e-62
Identity = 132/199 (66.33%), Postives = 155/199 (77.89%), Query Frame = 0


Query: 5   AYASARPTLSFHL----SQPSVPS-PRFNFKPPLVAFPPLQRSAAARPIPIFTLNSIDVS 64
           A+A+ARPT SFHL    +QP  P     + +P       LQRS    P       SIDVS
Sbjct: 2   AFATARPTFSFHLRTSHAQPQKPHLAVLSLQPSKTPIQSLQRS----PRLQLASKSIDVS 61

Query: 65  KEDKPTSDDPDFAAVVGEXXXXXXXKLDRRRMEEKFAVLNTGIYECRSCGHKFDEAVGDP 124
           KEDKP S++P  A+   + XXXXX K D+RR+EE+FAVLNTGIYECRSCG+++DEAVGDP
Sbjct: 62  KEDKPISEEPASASAPTDSXXXXXEKFDKRRLEERFAVLNTGIYECRSCGYRYDEAVGDP 121

Query: 125 TYPIAPGLPFEQLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGNTLTSGQKAVL 184
           +YPI PGLPF+++P+DWRCPTCGAAKSFFESKSVEIAGFAQNQQ+GLGGN LTSGQK +L
Sbjct: 122 SYPIPPGLPFDRMPDDWRCPTCGAAKSFFESKSVEIAGFAQNQQFGLGGNALTSGQKTLL 181

Query: 185 IYGTLFFFFALFLSGYFLQ 199
           IYG+LFFFF LFLSGYFLQ
Sbjct: 182 IYGSLFFFFVLFLSGYFLQ 196

The following BLAST results are available for this feature:

BLAST of Carg23432 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022946609.1	2.3e-103	100.00	uncharacterized protein LOC111450624 [Cucurbita moschata]	[more]
XP_023545844.1	8.2e-101	94.97	uncharacterized protein LOC111805157 [Cucurbita pepo subsp. pepo]	[more]
XP_022999262.1	1.7e-98	93.88	uncharacterized protein LOC111493686 [Cucurbita maxima]	[more]
ADN33910.1	5.7e-86	86.80	rubredoxin [Cucumis melo subsp. melo]	[more]
XP_016901839.1	5.7e-86	86.80	PREDICTED: uncharacterized protein LOC103499548 [Cucumis melo] >XP_016901842.1 P...	[more]

BLAST of Carg23432 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G54500.1	1.9e-51	79.65	Rubredoxin-like superfamily protein	[more]

BLAST of Carg23432 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|P73068\|RUBR_SYNY3	1.8e-19	41.96	Rubredoxin OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=rub PE=...	[more]
sp\|Q9XBL8\|RUBR_ANAVT	1.7e-17	45.79	Rubredoxin OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) OX=240292 GN=ru...	[more]
sp\|Q9WWN1\|RUBR_NOSS1	2.9e-17	45.79	Rubredoxin OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576) OX=103690 GN=...	[more]
sp\|P00270\|RUBR_DESGI	9.2e-11	54.00	Rubredoxin OS=Desulfovibrio gigas OX=879 PE=1 SV=1	[more]
sp\|Q9FDN6\|HRB_MOOTA	2.0e-10	55.32	High molecular weight rubredoxin OS=Moorella thermoacetica (strain ATCC 39073 / ...	[more]

BLAST of Carg23432 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S4E0U3\|A0A1S4E0U3_CUCME	3.8e-86	86.80	uncharacterized protein LOC103499548 OS=Cucumis melo OX=3656 GN=LOC103499548 PE=...	[more]
tr\|E5GBR8\|E5GBR8_CUCME	3.8e-86	86.80	Rubredoxin OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]
tr\|A0A0A0LJE4\|A0A0A0LJE4_CUCSA	1.1e-85	86.50	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G012140 PE=4 SV=1	[more]
tr\|A0A2P6R6A1\|A0A2P6R6A1_ROSCH	2.0e-63	64.82	Putative rubredoxin-type OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr3g0452211 PE=...	[more]
tr\|A0A1U8B9X1\|A0A1U8B9X1_NELNU	2.9e-62	66.33	uncharacterized protein LOC104612311 OS=Nelumbo nucifera OX=4432 GN=LOC104612311...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0046872	metal ion binding
GO:0005506	iron ion binding

Vocabulary: **INTERPRO**
Term	Definition
IPR024934	Rubredoxin-like_dom
IPR018527	Rubredoxin_Fe_BS
IPR024935	Rubredoxin_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005506	iron ion binding
molecular_function	GO:0046872	metal ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg23432-RA	Carg23432-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR024935	Rubredoxin domain	PRINTS	PR00163	RUBREDOXIN	coord: 132..148 score: 57.12 coord: 102..118 score: 44.12
IPR024935	Rubredoxin domain	PFAM	PF00301	Rubredoxin	coord: 103..148 e-value: 1.4E-17 score: 63.3
IPR024935	Rubredoxin domain	CDD	cd00730	rubredoxin	coord: 103..149 e-value: 4.98959E-21 score: 81.9686
None	No IPR available	GENE3D	G3DSA:2.20.28.10		coord: 96..155 e-value: 2.0E-22 score: 80.4
None	No IPR available	PANTHER	PTHR10909:SF287	SUBFAMILY NOT NAMED	coord: 10..198
None	No IPR available	PANTHER	PTHR10909	ELECTRON TRANSPORT OXIDOREDUCTASE	coord: 10..198
None	No IPR available	SUPERFAMILY	SSF57802	Rubredoxin-like	coord: 99..165
IPR018527	Rubredoxin, iron-binding site	PROSITE	PS00202	RUBREDOXIN	coord: 132..142
IPR024934	Rubredoxin-like domain	PROSITE	PS50903	RUBREDOXIN_LIKE	coord: 100..151 score: 13.154

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg23432	Cla019828	Watermelon (97103) v1	carwmB0290
Carg23432	Csa2G012140	Cucumber (Chinese Long) v2	carcuB0324
Carg23432	MELO3C004358	Melon (DHL92) v3.5.1	carmeB0298
Carg23432	ClCG02G016370	Watermelon (Charleston Gray)	carwcgB0290
Carg23432	CSPI02G03220	Wild cucumber (PI 183967)	carcpiB0330
Carg23432	Cucsa.133480	Cucumber (Gy14) v1	carcgyB0349
Carg23432	CmaCh05G011830	Cucurbita maxima (Rimu)	carcmaB0410
Carg23432	CmoCh05G012070	Cucurbita moschata (Rifu)	carcmoB0405
Carg23432	Lsi11G004690	Bottle gourd (USVL1VR-Ls)	carlsiB271
Carg23432	Cp4.1LG11g09830	Cucurbita pepo (Zucchini)	carcpeB0410
Carg23432	MELO3C004358.2	Melon (DHL92) v3.6.1	carmedB0309
Carg23432	CsaV3_2G004360	Cucumber (Chinese Long) v3	carcucB0330
Carg23432	Bhi06G001497	Wax gourd	carwgoB0384

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg23432	Silver-seed gourd	carcarB325
Carg23432	Cucumber (Gy14) v2	carcgybB0310
Carg23432	Cucurbita maxima (Rimu)	carcmaB0409
Carg23432	Cucurbita moschata (Rifu)	carcmoB0404
Carg23432	Cucurbita pepo (Zucchini)	carcpeB0411
Carg23432	Watermelon (97103) v2	carwmbB0306