Lsi11G004590 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi11G004590
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Chloroplast ribose-5-phosphate isomerase
Location	chr11 : 4789603 .. 4790457 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCCCTTTCCTTCATCTCTCCTCCTTCTCTTTCCTCCTCCCGCCACGTTTCCTCCATAGCCAACCTTCTTCTCCGCTCCTCAAAACCCCTAAATCTCTCCGCCCATTGCCGACCTCTCTCCGTTCACGCCCGCTCCGTCTCCACTCTCACTCAAGACGACCTCAAGAAGCTCGCCGCCGACAAGGCCGTCGAGTATGTCAAGAGCGGCATGGTTCTCGGCCTCGGCACCGGCTCCACCGCCGCCTTCGTTGTCGCTAAGATTGGCGAACTTCTCAAGACTAATCAATTGAGCGACATTGTTGGAATCCCTACCTCCAAGCGGACGGAGGAGCAAGCTAGGGCATTAGGAATTCCTCTTTCTGTCTTGGATGACCATCCGCATCTCGATTTGGCTATCGATGGCGCTGATGAAGTCGATCCAGATCTGAATCTTGTCAAAGGCCGTGGCGGCGCTCTCTTGCGTGAGAAAATGGTGGAGGCTGCTTCCGATAAATTCGTCGTCGTTGTCGATGATACTAAATTGGTTGACGGCCTCGGCGGAAGCGGTCTCGCGATGCCGGTGGAAGTCGTTCAGTTTTGCTGGAAATACAATTTGGTGAGGCTTCAAGAGCTGTTCAAGGACGAAGGTTGCGACGCTAAGCTCCGATTAGACGCCGATGGGAAGCCATACGTTACCGATAACTCGAATTACATAGTGGATTTGTATTTCCAGACTCCGATCAAGGATGGATTGGCCGCCGGAAAAGAGATATCGGCGTTCGAAGGAGTGGTGGAGCACGGATTGTTCTTGGATATGGCGACCGCCGTAATCATCGCCGGAAAAGATGGAATCGACATCAAGAACAAATGA

mRNA sequence

ATGGCTTCCCTTTCCTTCATCTCTCCTCCTTCTCTTTCCTCCTCCCGCCACGTTTCCTCCATAGCCAACCTTCTTCTCCGCTCCTCAAAACCCCTAAATCTCTCCGCCCATTGCCGACCTCTCTCCGTTCACGCCCGCTCCGTCTCCACTCTCACTCAAGACGACCTCAAGAAGCTCGCCGCCGACAAGGCCGTCGAGTATGTCAAGAGCGGCATGGTTCTCGGCCTCGGCACCGGCTCCACCGCCGCCTTCGTTGTCGCTAAGATTGGCGAACTTCTCAAGACTAATCAATTGAGCGACATTGTTGGAATCCCTACCTCCAAGCGGACGGAGGAGCAAGCTAGGGCATTAGGAATTCCTCTTTCTGTCTTGGATGACCATCCGCATCTCGATTTGGCTATCGATGGCGCTGATGAAGTCGATCCAGATCTGAATCTTGTCAAAGGCCGTGGCGGCGCTCTCTTGCGTGAGAAAATGGTGGAGGCTGCTTCCGATAAATTCGTCGTCGTTGTCGATGATACTAAATTGGTTGACGGCCTCGGCGGAAGCGGTCTCGCGATGCCGGTGGAAGTCGTTCAGTTTTGCTGGAAATACAATTTGGTGAGGCTTCAAGAGCTGTTCAAGGACGAAGGTTGCGACGCTAAGCTCCGATTAGACGCCGATGGGAAGCCATACGTTACCGATAACTCGAATTACATAGTGGATTTGTATTTCCAGACTCCGATCAAGGATGGATTGGCCGCCGGAAAAGAGATATCGGCGTTCGAAGGAGTGGTGGAGCACGGATTGTTCTTGGATATGGCGACCGCCGTAATCATCGCCGGAAAAGATGGAATCGACATCAAGAACAAATGA

Coding sequence (CDS)

ATGGCTTCCCTTTCCTTCATCTCTCCTCCTTCTCTTTCCTCCTCCCGCCACGTTTCCTCCATAGCCAACCTTCTTCTCCGCTCCTCAAAACCCCTAAATCTCTCCGCCCATTGCCGACCTCTCTCCGTTCACGCCCGCTCCGTCTCCACTCTCACTCAAGACGACCTCAAGAAGCTCGCCGCCGACAAGGCCGTCGAGTATGTCAAGAGCGGCATGGTTCTCGGCCTCGGCACCGGCTCCACCGCCGCCTTCGTTGTCGCTAAGATTGGCGAACTTCTCAAGACTAATCAATTGAGCGACATTGTTGGAATCCCTACCTCCAAGCGGACGGAGGAGCAAGCTAGGGCATTAGGAATTCCTCTTTCTGTCTTGGATGACCATCCGCATCTCGATTTGGCTATCGATGGCGCTGATGAAGTCGATCCAGATCTGAATCTTGTCAAAGGCCGTGGCGGCGCTCTCTTGCGTGAGAAAATGGTGGAGGCTGCTTCCGATAAATTCGTCGTCGTTGTCGATGATACTAAATTGGTTGACGGCCTCGGCGGAAGCGGTCTCGCGATGCCGGTGGAAGTCGTTCAGTTTTGCTGGAAATACAATTTGGTGAGGCTTCAAGAGCTGTTCAAGGACGAAGGTTGCGACGCTAAGCTCCGATTAGACGCCGATGGGAAGCCATACGTTACCGATAACTCGAATTACATAGTGGATTTGTATTTCCAGACTCCGATCAAGGATGGATTGGCCGCCGGAAAAGAGATATCGGCGTTCGAAGGAGTGGTGGAGCACGGATTGTTCTTGGATATGGCGACCGCCGTAATCATCGCCGGAAAAGATGGAATCGACATCAAGAACAAATGA

Protein sequence

MASLSFISPPSLSSSRHVSSIANLLLRSSKPLNLSAHCRPLSVHARSVSTLTQDDLKKLAADKAVEYVKSGMVLGLGTGSTAAFVVAKIGELLKTNQLSDIVGIPTSKRTEEQARALGIPLSVLDDHPHLDLAIDGADEVDPDLNLVKGRGGALLREKMVEAASDKFVVVVDDTKLVDGLGGSGLAMPVEVVQFCWKYNLVRLQELFKDEGCDAKLRLDADGKPYVTDNSNYIVDLYFQTPIKDGLAAGKEISAFEGVVEHGLFLDMATAVIIAGKDGIDIKNK

Homology

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BLAST of Lsi11G004590 vs. Swiss-Prot
Match: RPI3_ARATH (Probable ribose-5-phosphate isomerase 3, chloroplastic OS=Arabidopsis thaliana GN=RPI3 PE=1 SV=1)

HSP 1 Score: 379.8 bits (974), Expect = 2.6e-104
Identity = 200/284 (70.42%), Postives = 234/284 (82.39%), Query Frame = 1


Query: 1   MASLSFISPPSLSSSRHVSSIANLLLRSSKPLNLSAHCRPLSVHARSVSTLTQDDLKKLA 60
           MASLSF+S   L+      SIA     SS   ++S      SV A+SV  L+QDDLKKLA
Sbjct: 1   MASLSFVSSSHLTL--RTPSIALRSTGSSPRTSVS-----FSVKAQSV-ALSQDDLKKLA 60

Query: 61  ADKAVEYVKSGMVLGLGTGSTAAFVVAKIGELLKTNQLSDIVGIPTSKRTEEQARALGIP 120
           A+KAVE +K GMVLGLGTGSTAAF V +IG+LL + +L DIVGIPTSKRTEEQAR+LGIP
Sbjct: 61  AEKAVEAIKPGMVLGLGTGSTAAFAVDQIGKLLSSGELYDIVGIPTSKRTEEQARSLGIP 120

Query: 121 LSVLDDHPHLDLAIDGADEVDPDLNLVKGRGGALLREKMVEAASDKFVVVVDDTKLVDGL 180
           L  LD HP +DLAIDGADEVDP+L+LVKGRGGALLREKMVEA +DKF+VV DDTKLV GL
Sbjct: 121 LVGLDTHPRIDLAIDGADEVDPNLDLVKGRGGALLREKMVEAVADKFIVVADDTKLVTGL 180

Query: 181 GGSGLAMPVEVVQFCWKYNLVRLQELFKDEGCDAKLRLDADGKPYVTDNSNYIVDLYFQT 240
           GGSGLAMPVEVVQFCW +NL+RLQ+LFK+ GC++KLR+D DGKPYVTDNSNYI+DLYF+T
Sbjct: 181 GGSGLAMPVEVVQFCWNFNLIRLQDLFKEFGCESKLRVDGDGKPYVTDNSNYIIDLYFKT 240

Query: 241 PIKDGLAAGKEISAFEGVVEHGLFLDMATAVIIAGKDGIDIKNK 285
           P+KDG AA KEI  F+GVVEHGLFL MAT+VIIAGK+G+++  K
Sbjct: 241 PLKDGFAAAKEIGKFQGVVEHGLFLGMATSVIIAGKNGVEVMTK 276

[Close]

BLAST of Lsi11G004590 vs. Swiss-Prot
Match: RPI2_ARATH (Probable ribose-5-phosphate isomerase 2 OS=Arabidopsis thaliana GN=RPI2 PE=1 SV=1)

HSP 1 Score: 297.7 bits (761), Expect = 1.3e-79
Identity = 149/234 (63.68%), Postives = 185/234 (79.06%), Query Frame = 1


Query: 51  LTQDDLKKLAADKAVEYVKSGMVLGLGTGSTAAFVVAKIGELLKTNQLSDIVGIPTSKRT 110
           LTQD+LK++AA KAVE+V+SGMVLGLGTGSTA   V +IGELL+  +L +IVGIPTSK+T
Sbjct: 31  LTQDELKRIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLENIVGIPTSKKT 90

Query: 111 EEQARALGIPLSVLDDHPHLDLAIDGADEVDPDLNLVKGRGGALLREKMVEAASDKFVVV 170
           +EQA +LGIPLS LD HP +DL+IDGADEVDP LNLVKGRGG+LLREKM+E AS KFVV+
Sbjct: 91  QEQALSLGIPLSDLDAHPVIDLSIDGADEVDPFLNLVKGRGGSLLREKMIEGASKKFVVI 150

Query: 171 VDDTKLVDGLGGSGLAMPVEVVQFCWKYNLVRLQELFKDEGCDAKLRLDADGKPYVTDNS 230
           VDD+K+V  +GGS LA+PVE+V FCWK+   +L+ L +  GC+A LRL   GK +VTDN 
Sbjct: 151 VDDSKMVKHIGGSKLALPVEIVPFCWKFTAEKLRSLLEGYGCEANLRLGEKGKAFVTDNG 210

Query: 231 NYIVDLYFQTPIKDGLAAGKEISAFEGVVEHGLFLDMATAVIIAGKDGIDIKNK 285
           NYIVD++ +  + D  A    I    GVVEHG+FLDMA+ VIIAG+ G+ IKNK
Sbjct: 211 NYIVDMHVEEDMGDLGAVSDAILRLPGVVEHGMFLDMASTVIIAGELGVKIKNK 264

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BLAST of Lsi11G004590 vs. Swiss-Prot
Match: RPI1_ARATH (Probable ribose-5-phosphate isomerase 1 OS=Arabidopsis thaliana GN=RPI1 PE=1 SV=1)

HSP 1 Score: 292.0 bits (746), Expect = 7.2e-78
Identity = 150/245 (61.22%), Postives = 187/245 (76.33%), Query Frame = 1


Query: 45  ARSVSTLTQDDLKKLAADKAVEYVKSGMVLGLGTGSTAAFVVAKIGELLKTNQLSDIVGI 104
           A  +S LTQ++LKK+AA KAVE+V+SGMV+GLGTGSTA   VA+I ELL+  +L DI+GI
Sbjct: 21  APPLSNLTQEELKKIAAYKAVEFVESGMVIGLGTGSTAKHAVARISELLREGKLKDIIGI 80

Query: 105 PTSKRTEEQARALGIPLSVLDDHPHLDLAIDGADEVDPDLNLVKGRGGALLREKMVEAAS 164
           PTS  T EQA +LGIPLS LD HP +DL+IDGADEVDP LNLVKGRGG+LLREKM+E AS
Sbjct: 81  PTSTTTHEQAVSLGIPLSDLDSHPVVDLSIDGADEVDPALNLVKGRGGSLLREKMIEGAS 140

Query: 165 DKFVVVVDDTKLVDGLGGSGLAMPVEVVQFCWKYNLVRLQELFKDEGCDAKLRL-----D 224
            KFVV+VD++KLV  +GGSGLA+PVEVV FC  +   +L+ELF+D GC AKLR+      
Sbjct: 141 KKFVVIVDESKLVKYIGGSGLAVPVEVVPFCCDFTRGKLEELFRDSGCVAKLRMKIGSNG 200

Query: 225 ADGKPYVTDNSNYIVDLYFQTPIKDGLAAGKEISAFEGVVEHGLFLDMATAVIIAGKDGI 284
            +  P VTDN NY+VDLY +  I D   A + I  F GVVEHG+FL MAT +I+AGK G+
Sbjct: 201 EEAAPAVTDNRNYVVDLYLERDIGDLEVASEAILRFPGVVEHGMFLGMATTLIVAGKFGV 260

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BLAST of Lsi11G004590 vs. Swiss-Prot
Match: RPIA_SYNJA (Ribose-5-phosphate isomerase A OS=Synechococcus sp. (strain JA-3-3Ab) GN=rpiA PE=3 SV=1)

HSP 1 Score: 215.7 bits (548), Expect = 6.6e-55
Identity = 116/228 (50.88%), Postives = 159/228 (69.74%), Query Frame = 1


Query: 54  DDLKKLAADKAVEYVKSGMVLGLGTGSTAAFVVAKIGELLKTNQLSDIVGIPTSKRTEEQ 113
           D+LK+ AA  A + V+SGMV+GLGTGSTAAF V  + + ++   L   +G+PTS+RT EQ
Sbjct: 5   DELKQAAAQAAAQKVQSGMVVGLGTGSTAAFAVGALAQRMQKEGL-QFIGVPTSERTAEQ 64

Query: 114 ARALGIPLSVLDDHPHLDLAIDGADEVD-PDLNLVKGRGGALLREKMVEAASDKFVVVVD 173
           AR+LGIPL+ L++ P LDLAIDGADE++   LNL+KG GGALLREK+VEA++ + +++ D
Sbjct: 65  ARSLGIPLATLEEQPRLDLAIDGADEIEVGSLNLIKGAGGALLREKLVEASAAELIIIAD 124

Query: 174 DTKLVDGLGGSGLAMPVEVVQFCWKYNLVRLQELFKDEGCDAKLRLDADGKPYVTDNSNY 233
            +K V  L G+   +PVEVV+F WK  L R++ L    GC A LR  A+G PY+TD  +Y
Sbjct: 125 ASKKVAHL-GTRFPVPVEVVRFGWKTTLARVEAL----GCQAVLRRTAEGDPYLTDEQHY 184

Query: 234 IVDLYFQTPIKDGLAAGKEISAFEGVVEHGLFLDMATAVIIAGKDGID 281
           I+D  F  PI +     +++    GVVEHGLF+ MAT  IIAG +GI+
Sbjct: 185 ILDCQF-GPIANPAKLAEQLKGTVGVVEHGLFIGMATEAIIAGPEGIE 225

[Close]

BLAST of Lsi11G004590 vs. Swiss-Prot
Match: RPIA_DESAA (Ribose-5-phosphate isomerase A OS=Desulfatibacillum alkenivorans (strain AK-01) GN=rpiA PE=3 SV=1)

HSP 1 Score: 213.4 bits (542), Expect = 3.3e-54
Identity = 119/228 (52.19%), Postives = 154/228 (67.54%), Query Frame = 1


Query: 52  TQDDLKKLAADKAVEYVKSGMVLGLGTGSTAAFVVAKIGELLKTNQLSDIVGIPTSKRTE 111
           +QD LKK AA+KAVEY++SGMV+GLG+GSTA F +  I  L+K  +L DIVGIP+S  TE
Sbjct: 3   SQDALKKQAAEKAVEYLESGMVVGLGSGSTATFAIHAIARLMKEGKLKDIVGIPSSTPTE 62

Query: 112 EQARALGIPLSVLDDHPHLDLAIDGADEVDPDLNLVKGRGGALLREKMVEAASDKFVVVV 171
           E AR+LGIPL   ++H  +D+ IDGADEVDPDLNL+KG GGALLREK+V  A+ K +++V
Sbjct: 63  EVARSLGIPLVGFEEHAVIDVTIDGADEVDPDLNLIKGGGGALLREKVVAQATKKNIIIV 122

Query: 172 DDTKLVDGLGGSGLAMPVEVVQFCWKYNLVRLQELFKDEGCDAKLRLDADGKPYVTDNSN 231
           D++K+ D L G+  A+PVEVV F        L+ L    G    +R +  GK + TDN N
Sbjct: 123 DESKISDKL-GTIFALPVEVVPFATASETRFLESL----GAKVTVRENQLGKAFKTDNHN 182

Query: 232 YIVDLYFQTPIKDGLAAGKEISAFEGVVEHGLFLDMATAVIIAGKDGI 280
            I+D  F  P+ D +  G  +S   GVVEHGLFL     VI+AG DGI
Sbjct: 183 RILDADF-GPMDDAVKIGMALSQRAGVVEHGLFLGTTALVIVAGADGI 224

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BLAST of Lsi11G004590 vs. TrEMBL
Match: A0A0A0LFJ4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G011530 PE=3 SV=1)

HSP 1 Score: 525.8 bits (1353), Expect = 3.3e-146
Identity = 272/284 (95.77%), Postives = 279/284 (98.24%), Query Frame = 1


Query: 1   MASLSFISPPSLSSSRHVSSIANLLLRSSKPLNLSAHCRPLSVHARSVSTLTQDDLKKLA 60
           MASLSFISPPS+SSSRHVSSIANLLLRSSKPLNLS H RPLSVHAR VSTLTQDDLKKLA
Sbjct: 1   MASLSFISPPSISSSRHVSSIANLLLRSSKPLNLSTHYRPLSVHAR-VSTLTQDDLKKLA 60

Query: 61  ADKAVEYVKSGMVLGLGTGSTAAFVVAKIGELLKTNQLSDIVGIPTSKRTEEQARALGIP 120
           ADKAVEYVKSGMVLGLGTGSTAAFVVAKIGELLKTNQL+DIVGIPTSKRTEEQAR+LGIP
Sbjct: 61  ADKAVEYVKSGMVLGLGTGSTAAFVVAKIGELLKTNQLTDIVGIPTSKRTEEQARSLGIP 120

Query: 121 LSVLDDHPHLDLAIDGADEVDPDLNLVKGRGGALLREKMVEAASDKFVVVVDDTKLVDGL 180
           LSVLDDHPHLDLAIDGADEVDPDLNLVKGRGGALLREKMVEAASDKFVVVVDDTKLVDGL
Sbjct: 121 LSVLDDHPHLDLAIDGADEVDPDLNLVKGRGGALLREKMVEAASDKFVVVVDDTKLVDGL 180

Query: 181 GGSGLAMPVEVVQFCWKYNLVRLQELFKDEGCDAKLRLDADGKPYVTDNSNYIVDLYFQT 240
           GGSGLAMPVEVVQFCWKYNLVRLQELFK+EGC+AKLRLD D KPYVTDNSNYIVDLYF+T
Sbjct: 181 GGSGLAMPVEVVQFCWKYNLVRLQELFKEEGCEAKLRLDGDEKPYVTDNSNYIVDLYFKT 240

Query: 241 PIKDGLAAGKEISAFEGVVEHGLFLDMATAVIIAGKDGIDIKNK 285
           PIKDGLAAGKEIS+FEGVVEHGLFLDMATAVIIAGKDGIDIKNK
Sbjct: 241 PIKDGLAAGKEISSFEGVVEHGLFLDMATAVIIAGKDGIDIKNK 283

[Close]

BLAST of Lsi11G004590 vs. TrEMBL
Match: W9RQW9_9ROSA (Putative ribose-5-phosphate isomerase OS=Morus notabilis GN=L484_024593 PE=3 SV=1)

HSP 1 Score: 446.8 bits (1148), Expect = 1.9e-122
Identity = 233/289 (80.62%), Postives = 255/289 (88.24%), Query Frame = 1


Query: 2   ASLSFISPPSLSSSRH------VSSIANLLLRSSKPLNLSAHCRPLSVHARSVSTLTQDD 61
           +SLS +SPPSLSS+ H       S    L+LR+ +PLN+       +  A+SV  LTQDD
Sbjct: 3   SSLSLLSPPSLSSTHHHYNASSSSFTTRLILRTPRPLNVRTPTS--TTRAQSVPALTQDD 62

Query: 62  LKKLAADKAVEYVKSGMVLGLGTGSTAAFVVAKIGELLKTNQLSDIVGIPTSKRTEEQAR 121
           LKKLAADKAVEYVKSGMVLGLGTGSTAAFVVAK+G+LL T QLSDIVGIPTSKRTEEQAR
Sbjct: 63  LKKLAADKAVEYVKSGMVLGLGTGSTAAFVVAKLGQLLSTGQLSDIVGIPTSKRTEEQAR 122

Query: 122 ALGIPLSVLDDHPHLDLAIDGADEVDPDLNLVKGRGGALLREKMVEAASDKFVVVVDDTK 181
           +LGIPLSVLDDHP LDLAIDGADEVDPDLNLVKGRGGALLREKMVEAASDKFVVV D+TK
Sbjct: 123 SLGIPLSVLDDHPCLDLAIDGADEVDPDLNLVKGRGGALLREKMVEAASDKFVVVADETK 182

Query: 182 LVDGLGGSGLAMPVEVVQFCWKYNLVRLQELFKDEGCDAKLRLDADGKPYVTDNSNYIVD 241
           LV+GLGGSGLAMPVEVVQFCWKYNLVRLQELFK+EG DAKLRLD+DGKPYVTDNSNYIVD
Sbjct: 183 LVEGLGGSGLAMPVEVVQFCWKYNLVRLQELFKEEGVDAKLRLDSDGKPYVTDNSNYIVD 242

Query: 242 LYFQTPIKDGLAAGKEISAFEGVVEHGLFLDMATAVIIAGKDGIDIKNK 285
           LYF+TPIKD +AAGKEISA EGVVEHGLFLDMATAVIIAG +G+D++ K
Sbjct: 243 LYFKTPIKDAIAAGKEISALEGVVEHGLFLDMATAVIIAGTNGVDVQTK 289

[Close]

BLAST of Lsi11G004590 vs. TrEMBL
Match: F6HTS6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0030g01900 PE=3 SV=1)

HSP 1 Score: 441.0 bits (1133), Expect = 1.1e-120
Identity = 233/288 (80.90%), Postives = 256/288 (88.89%), Query Frame = 1


Query: 1   MASLSFISPP---SLSSSRHVSSIANLLLRSSKPLNLSAHCRPL-SVHARSVSTLTQDDL 60
           MA+LS +SPP   SLSS  H ++++   LR+S    L+   RPL S+ A S   LTQDDL
Sbjct: 1   MATLSLLSPPKSHSLSSLHHRNALS---LRTSS--TLTPRTRPLLSIRAFSAPALTQDDL 60

Query: 61  KKLAADKAVEYVKSGMVLGLGTGSTAAFVVAKIGELLKTNQLSDIVGIPTSKRTEEQARA 120
           KKLAADKAV+YVKSGMVLGLGTGSTAAFVVAK+G LLKT QLSDIVG+PTSKRTEEQA +
Sbjct: 61  KKLAADKAVDYVKSGMVLGLGTGSTAAFVVAKLGHLLKTGQLSDIVGVPTSKRTEEQALS 120

Query: 121 LGIPLSVLDDHPHLDLAIDGADEVDPDLNLVKGRGGALLREKMVEAASDKFVVVVDDTKL 180
           LGIPLSVLD HP +DLAIDGADEVDPDLNLVKGRGGALLREKMVEAASDKFVVVVDDTKL
Sbjct: 121 LGIPLSVLDHHPSIDLAIDGADEVDPDLNLVKGRGGALLREKMVEAASDKFVVVVDDTKL 180

Query: 181 VDGLGGSGLAMPVEVVQFCWKYNLVRLQELFKDEGCDAKLRLDADGKPYVTDNSNYIVDL 240
           V+GLGGSGLAMPVEVVQFCWKYNLVRLQELFK+EGC+AKLRL+ DGKPYVTDNSNYIVDL
Sbjct: 181 VNGLGGSGLAMPVEVVQFCWKYNLVRLQELFKEEGCEAKLRLNPDGKPYVTDNSNYIVDL 240

Query: 241 YFQTPIKDGLAAGKEISAFEGVVEHGLFLDMATAVIIAGKDGIDIKNK 285
           YF+TPIKD +AAGKEIS+FEGVVEHGLFLDMATAVIIAGKDG+ +K K
Sbjct: 241 YFKTPIKDSIAAGKEISSFEGVVEHGLFLDMATAVIIAGKDGVTVKTK 283

[Close]

BLAST of Lsi11G004590 vs. TrEMBL
Match: V5N8M2_PHAVU (Putative ribose-5-phosphate isomerase OS=Phaseolus vulgaris PE=2 SV=1)

HSP 1 Score: 436.4 bits (1121), Expect = 2.6e-119
Identity = 228/284 (80.28%), Postives = 251/284 (88.38%), Query Frame = 1


Query: 1   MASLSFISPPSLSSSRHVSSIANLLLRSSKPLNLSAHCRPLSVHARSVSTLTQDDLKKLA 60
           MASLS  SPPSLSS+ H +S   L+LR+  P +L     P S+ A    TLTQDDLK+LA
Sbjct: 1   MASLSLSSPPSLSSAHHNAS-TRLILRT--PNSLKLRTPPHSLPAIRAITLTQDDLKRLA 60

Query: 61  ADKAVEYVKSGMVLGLGTGSTAAFVVAKIGELLKTNQLSDIVGIPTSKRTEEQARALGIP 120
           ADKAVE VKSGMVLGLGTGSTAAFVVAK+G LL + QLSDI+G+PTSKRTEEQAR+LGIP
Sbjct: 61  ADKAVESVKSGMVLGLGTGSTAAFVVAKLGALLASGQLSDIIGVPTSKRTEEQARSLGIP 120

Query: 121 LSVLDDHPHLDLAIDGADEVDPDLNLVKGRGGALLREKMVEAASDKFVVVVDDTKLVDGL 180
           LSVLDD+P LDLAIDGADEVDPDLNLVKGRGGALLREKMVEAASDKF+VVVDDTKLVDGL
Sbjct: 121 LSVLDDNPRLDLAIDGADEVDPDLNLVKGRGGALLREKMVEAASDKFIVVVDDTKLVDGL 180

Query: 181 GGSGLAMPVEVVQFCWKYNLVRLQELFKDEGCDAKLRLDADGKPYVTDNSNYIVDLYFQT 240
           GGSGLAMPVEVVQFCWKYNL RLQ+LFK+EGCDAKLRLD  GKPYVTDNSNYIVDLYF+T
Sbjct: 181 GGSGLAMPVEVVQFCWKYNLDRLQQLFKEEGCDAKLRLDESGKPYVTDNSNYIVDLYFKT 240

Query: 241 PIKDGLAAGKEISAFEGVVEHGLFLDMATAVIIAGKDGIDIKNK 285
           PI+D LAAG EISA EGVVEHGLFL+MAT+VIIAGK G+++KNK
Sbjct: 241 PIRDSLAAGAEISALEGVVEHGLFLNMATSVIIAGKSGVEVKNK 281

[Close]

BLAST of Lsi11G004590 vs. TrEMBL
Match: M5VZJ1_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009739mg PE=3 SV=1)

HSP 1 Score: 433.0 bits (1112), Expect = 2.9e-118
Identity = 223/284 (78.52%), Postives = 251/284 (88.38%), Query Frame = 1


Query: 2   ASLSFISPPSLSSSRHVSSIANLLLRSSKPLNL-SAHCRPLSVHARSVSTLTQDDLKKLA 61
           +SLS +SP       H +S  +LLLR+ K  NL S+  RP+S+ AR+V  LTQD+LKKLA
Sbjct: 3   SSLSLLSP-------HNASTTHLLLRTPKTPNLRSSSYRPMSIKARTVPALTQDELKKLA 62

Query: 62  ADKAVEYVKSGMVLGLGTGSTAAFVVAKIGELLKTNQLSDIVGIPTSKRTEEQARALGIP 121
           ADKAVEYVKSGMVLGLGTGSTAAFVV+K+GELLK+ +L +IVG+PTSKRTE+QAR LGIP
Sbjct: 63  ADKAVEYVKSGMVLGLGTGSTAAFVVSKLGELLKSGELQNIVGVPTSKRTEDQARQLGIP 122

Query: 122 LSVLDDHPHLDLAIDGADEVDPDLNLVKGRGGALLREKMVEAASDKFVVVVDDTKLVDGL 181
           LSVLDDHP +DLAIDGADEVDP+L+LVKGRGGALLREKMVEAASDKFVVV D+TKLV GL
Sbjct: 123 LSVLDDHPKIDLAIDGADEVDPNLDLVKGRGGALLREKMVEAASDKFVVVADETKLVTGL 182

Query: 182 GGSGLAMPVEVVQFCWKYNLVRLQELFKDEGCDAKLRLDADGKPYVTDNSNYIVDLYFQT 241
           GGSGLAMPVEVVQFCWKYNLVRLQELF +EG +AKLRLD DGKPY+TDN NYIVDLYF++
Sbjct: 183 GGSGLAMPVEVVQFCWKYNLVRLQELFNEEGVEAKLRLDGDGKPYITDNFNYIVDLYFKS 242

Query: 242 PIKDGLAAGKEISAFEGVVEHGLFLDMATAVIIAGKDGIDIKNK 285
           PIKDG AAGKEIS FEGVVEHGLFLDMATAVIIAGKDG+D+K K
Sbjct: 243 PIKDGPAAGKEISKFEGVVEHGLFLDMATAVIIAGKDGVDVKTK 279

[Close]

BLAST of Lsi11G004590 vs. TAIR10
Match: AT3G04790.1 (AT3G04790.1 Ribose 5-phosphate isomerase, type A protein)

HSP 1 Score: 379.8 bits (974), Expect = 1.5e-105
Identity = 200/284 (70.42%), Postives = 234/284 (82.39%), Query Frame = 1


Query: 1   MASLSFISPPSLSSSRHVSSIANLLLRSSKPLNLSAHCRPLSVHARSVSTLTQDDLKKLA 60
           MASLSF+S   L+      SIA     SS   ++S      SV A+SV  L+QDDLKKLA
Sbjct: 1   MASLSFVSSSHLTL--RTPSIALRSTGSSPRTSVS-----FSVKAQSV-ALSQDDLKKLA 60

Query: 61  ADKAVEYVKSGMVLGLGTGSTAAFVVAKIGELLKTNQLSDIVGIPTSKRTEEQARALGIP 120
           A+KAVE +K GMVLGLGTGSTAAF V +IG+LL + +L DIVGIPTSKRTEEQAR+LGIP
Sbjct: 61  AEKAVEAIKPGMVLGLGTGSTAAFAVDQIGKLLSSGELYDIVGIPTSKRTEEQARSLGIP 120

Query: 121 LSVLDDHPHLDLAIDGADEVDPDLNLVKGRGGALLREKMVEAASDKFVVVVDDTKLVDGL 180
           L  LD HP +DLAIDGADEVDP+L+LVKGRGGALLREKMVEA +DKF+VV DDTKLV GL
Sbjct: 121 LVGLDTHPRIDLAIDGADEVDPNLDLVKGRGGALLREKMVEAVADKFIVVADDTKLVTGL 180

Query: 181 GGSGLAMPVEVVQFCWKYNLVRLQELFKDEGCDAKLRLDADGKPYVTDNSNYIVDLYFQT 240
           GGSGLAMPVEVVQFCW +NL+RLQ+LFK+ GC++KLR+D DGKPYVTDNSNYI+DLYF+T
Sbjct: 181 GGSGLAMPVEVVQFCWNFNLIRLQDLFKEFGCESKLRVDGDGKPYVTDNSNYIIDLYFKT 240

Query: 241 PIKDGLAAGKEISAFEGVVEHGLFLDMATAVIIAGKDGIDIKNK 285
           P+KDG AA KEI  F+GVVEHGLFL MAT+VIIAGK+G+++  K
Sbjct: 241 PLKDGFAAAKEIGKFQGVVEHGLFLGMATSVIIAGKNGVEVMTK 276

[Close]

BLAST of Lsi11G004590 vs. TAIR10
Match: AT2G01290.1 (AT2G01290.1 ribose-5-phosphate isomerase 2)

HSP 1 Score: 297.7 bits (761), Expect = 7.4e-81
Identity = 149/234 (63.68%), Postives = 185/234 (79.06%), Query Frame = 1


Query: 51  LTQDDLKKLAADKAVEYVKSGMVLGLGTGSTAAFVVAKIGELLKTNQLSDIVGIPTSKRT 110
           LTQD+LK++AA KAVE+V+SGMVLGLGTGSTA   V +IGELL+  +L +IVGIPTSK+T
Sbjct: 31  LTQDELKRIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLENIVGIPTSKKT 90

Query: 111 EEQARALGIPLSVLDDHPHLDLAIDGADEVDPDLNLVKGRGGALLREKMVEAASDKFVVV 170
           +EQA +LGIPLS LD HP +DL+IDGADEVDP LNLVKGRGG+LLREKM+E AS KFVV+
Sbjct: 91  QEQALSLGIPLSDLDAHPVIDLSIDGADEVDPFLNLVKGRGGSLLREKMIEGASKKFVVI 150

Query: 171 VDDTKLVDGLGGSGLAMPVEVVQFCWKYNLVRLQELFKDEGCDAKLRLDADGKPYVTDNS 230
           VDD+K+V  +GGS LA+PVE+V FCWK+   +L+ L +  GC+A LRL   GK +VTDN 
Sbjct: 151 VDDSKMVKHIGGSKLALPVEIVPFCWKFTAEKLRSLLEGYGCEANLRLGEKGKAFVTDNG 210

Query: 231 NYIVDLYFQTPIKDGLAAGKEISAFEGVVEHGLFLDMATAVIIAGKDGIDIKNK 285
           NYIVD++ +  + D  A    I    GVVEHG+FLDMA+ VIIAG+ G+ IKNK
Sbjct: 211 NYIVDMHVEEDMGDLGAVSDAILRLPGVVEHGMFLDMASTVIIAGELGVKIKNK 264

[Close]

BLAST of Lsi11G004590 vs. TAIR10
Match: AT1G71100.1 (AT1G71100.1 Ribose 5-phosphate isomerase, type A protein)

HSP 1 Score: 292.0 bits (746), Expect = 4.1e-79
Identity = 150/245 (61.22%), Postives = 187/245 (76.33%), Query Frame = 1


Query: 45  ARSVSTLTQDDLKKLAADKAVEYVKSGMVLGLGTGSTAAFVVAKIGELLKTNQLSDIVGI 104
           A  +S LTQ++LKK+AA KAVE+V+SGMV+GLGTGSTA   VA+I ELL+  +L DI+GI
Sbjct: 21  APPLSNLTQEELKKIAAYKAVEFVESGMVIGLGTGSTAKHAVARISELLREGKLKDIIGI 80

Query: 105 PTSKRTEEQARALGIPLSVLDDHPHLDLAIDGADEVDPDLNLVKGRGGALLREKMVEAAS 164
           PTS  T EQA +LGIPLS LD HP +DL+IDGADEVDP LNLVKGRGG+LLREKM+E AS
Sbjct: 81  PTSTTTHEQAVSLGIPLSDLDSHPVVDLSIDGADEVDPALNLVKGRGGSLLREKMIEGAS 140

Query: 165 DKFVVVVDDTKLVDGLGGSGLAMPVEVVQFCWKYNLVRLQELFKDEGCDAKLRL-----D 224
            KFVV+VD++KLV  +GGSGLA+PVEVV FC  +   +L+ELF+D GC AKLR+      
Sbjct: 141 KKFVVIVDESKLVKYIGGSGLAVPVEVVPFCCDFTRGKLEELFRDSGCVAKLRMKIGSNG 200

Query: 225 ADGKPYVTDNSNYIVDLYFQTPIKDGLAAGKEISAFEGVVEHGLFLDMATAVIIAGKDGI 284
            +  P VTDN NY+VDLY +  I D   A + I  F GVVEHG+FL MAT +I+AGK G+
Sbjct: 201 EEAAPAVTDNRNYVVDLYLERDIGDLEVASEAILRFPGVVEHGMFLGMATTLIVAGKFGV 260

[Close]

BLAST of Lsi11G004590 vs. TAIR10
Match: AT5G44520.1 (AT5G44520.1 NagB/RpiA/CoA transferase-like superfamily protein)

HSP 1 Score: 102.8 bits (255), Expect = 3.5e-22
Identity = 67/221 (30.32%), Postives = 112/221 (50.68%), Query Frame = 1


Query: 67  YVKSGMVLGLGTGSTAAFVVAKIGELLKTNQLSDIVGIPTSKRTEEQARALGIPLSVLDD 126
           YVKSGM++GLG+G  + F +  +G+ L +  L ++VG+P S R+  +A   GIPL    D
Sbjct: 51  YVKSGMIIGLGSGEASDFAIRYLGQQLGSGSLHNVVGVPMSARSASEAAKYGIPLEYYRD 110

Query: 127 HPHLDLAIDGADEVDPD-LNLVKGRGGA------LLREKMVEAASDKFVVVVDDTKLVDG 186
              +D A   AD V+ + L  V GR  +      +L++K +   +D+ V ++ + +   G
Sbjct: 111 GVQIDFAFHDADAVEENTLIAVIGRRRSSQEDDYILKQKSIVKVADEAVFMIKEEQYKAG 170

Query: 187 LGGSGLAMPVEVVQFCWKYNLVRLQELF-KDEGCDAKLRLDADGK-----PYVTDNSNYI 246
           L GS   +PV V    W      + +L+  D     +  ++ +G      P VT + + I
Sbjct: 171 LEGS---IPVLVQSLNWLAIAEEIDDLYLGDAEVWRRASVENEGPLGGDFPIVTSDGHNI 230

Query: 247 VDLYFQTPIKDGLAAGKEISAFEGVVEHGLFLDMATAVIIA 275
           +D+ F TPI+        +   +GVV+HGL +     V+IA
Sbjct: 231 LDVIFTTPIRSLADLATSLDKIDGVVDHGLIIKTRCTVVIA 268

[Close]

BLAST of Lsi11G004590 vs. NCBI nr
Match: gi|659070609|ref|XP_008455835.1| (PREDICTED: probable ribose-5-phosphate isomerase 3, chloroplastic [Cucumis melo])

HSP 1 Score: 533.5 bits (1373), Expect = 2.3e-148
Identity = 275/284 (96.83%), Postives = 281/284 (98.94%), Query Frame = 1


Query: 1   MASLSFISPPSLSSSRHVSSIANLLLRSSKPLNLSAHCRPLSVHARSVSTLTQDDLKKLA 60
           MASLSFISPPSLSSSRHVSSIANLLLRSSKPLNLS HCRPLSVHAR VSTLTQDDLKKLA
Sbjct: 1   MASLSFISPPSLSSSRHVSSIANLLLRSSKPLNLSTHCRPLSVHAR-VSTLTQDDLKKLA 60

Query: 61  ADKAVEYVKSGMVLGLGTGSTAAFVVAKIGELLKTNQLSDIVGIPTSKRTEEQARALGIP 120
           ADKAVEYVKSGMVLGLGTGSTAAFVVAKIGELLKTNQL+DIVGIPTSKRTEEQAR+LGIP
Sbjct: 61  ADKAVEYVKSGMVLGLGTGSTAAFVVAKIGELLKTNQLTDIVGIPTSKRTEEQARSLGIP 120

Query: 121 LSVLDDHPHLDLAIDGADEVDPDLNLVKGRGGALLREKMVEAASDKFVVVVDDTKLVDGL 180
           LSVLDDHPHLDLAIDGADEVDPDLNLVKGRGGALLREKMVEAASDKFVVVVDDTKLVDGL
Sbjct: 121 LSVLDDHPHLDLAIDGADEVDPDLNLVKGRGGALLREKMVEAASDKFVVVVDDTKLVDGL 180

Query: 181 GGSGLAMPVEVVQFCWKYNLVRLQELFKDEGCDAKLRLDADGKPYVTDNSNYIVDLYFQT 240
           GGSGLAMPVEVVQFCWKYNLVRLQELFK+EGC+AKLRL+ DGKPYVTDNSNYIVDLYF+T
Sbjct: 181 GGSGLAMPVEVVQFCWKYNLVRLQELFKEEGCEAKLRLEGDGKPYVTDNSNYIVDLYFKT 240

Query: 241 PIKDGLAAGKEISAFEGVVEHGLFLDMATAVIIAGKDGIDIKNK 285
           PIKDGLAAGKEISAFEGVVEHGLFLDMATAVIIAGKDGIDIKNK
Sbjct: 241 PIKDGLAAGKEISAFEGVVEHGLFLDMATAVIIAGKDGIDIKNK 283

[Close]

BLAST of Lsi11G004590 vs. NCBI nr
Match: gi|449442917|ref|XP_004139227.1| (PREDICTED: probable ribose-5-phosphate isomerase 3, chloroplastic [Cucumis sativus])

HSP 1 Score: 525.8 bits (1353), Expect = 4.7e-146
Identity = 272/284 (95.77%), Postives = 279/284 (98.24%), Query Frame = 1


Query: 1   MASLSFISPPSLSSSRHVSSIANLLLRSSKPLNLSAHCRPLSVHARSVSTLTQDDLKKLA 60
           MASLSFISPPS+SSSRHVSSIANLLLRSSKPLNLS H RPLSVHAR VSTLTQDDLKKLA
Sbjct: 1   MASLSFISPPSISSSRHVSSIANLLLRSSKPLNLSTHYRPLSVHAR-VSTLTQDDLKKLA 60

Query: 61  ADKAVEYVKSGMVLGLGTGSTAAFVVAKIGELLKTNQLSDIVGIPTSKRTEEQARALGIP 120
           ADKAVEYVKSGMVLGLGTGSTAAFVVAKIGELLKTNQL+DIVGIPTSKRTEEQAR+LGIP
Sbjct: 61  ADKAVEYVKSGMVLGLGTGSTAAFVVAKIGELLKTNQLTDIVGIPTSKRTEEQARSLGIP 120

Query: 121 LSVLDDHPHLDLAIDGADEVDPDLNLVKGRGGALLREKMVEAASDKFVVVVDDTKLVDGL 180
           LSVLDDHPHLDLAIDGADEVDPDLNLVKGRGGALLREKMVEAASDKFVVVVDDTKLVDGL
Sbjct: 121 LSVLDDHPHLDLAIDGADEVDPDLNLVKGRGGALLREKMVEAASDKFVVVVDDTKLVDGL 180

Query: 181 GGSGLAMPVEVVQFCWKYNLVRLQELFKDEGCDAKLRLDADGKPYVTDNSNYIVDLYFQT 240
           GGSGLAMPVEVVQFCWKYNLVRLQELFK+EGC+AKLRLD D KPYVTDNSNYIVDLYF+T
Sbjct: 181 GGSGLAMPVEVVQFCWKYNLVRLQELFKEEGCEAKLRLDGDEKPYVTDNSNYIVDLYFKT 240

Query: 241 PIKDGLAAGKEISAFEGVVEHGLFLDMATAVIIAGKDGIDIKNK 285
           PIKDGLAAGKEIS+FEGVVEHGLFLDMATAVIIAGKDGIDIKNK
Sbjct: 241 PIKDGLAAGKEISSFEGVVEHGLFLDMATAVIIAGKDGIDIKNK 283

[Close]

BLAST of Lsi11G004590 vs. NCBI nr
Match: gi|1009117613|ref|XP_015875411.1| (PREDICTED: probable ribose-5-phosphate isomerase 3, chloroplastic [Ziziphus jujuba])

HSP 1 Score: 460.7 bits (1184), Expect = 1.9e-126
Identity = 238/285 (83.51%), Postives = 261/285 (91.58%), Query Frame = 1


Query: 2   ASLSFISPPSLSSSRH-VSSIANLLLRSSKPLNLSAHCR-PLSVHARSVSTLTQDDLKKL 61
           +SLS +SPPSLSS+ H VSS A L++R++ PLNL  H R P+S+ A S   LTQDDLKKL
Sbjct: 3   SSLSLLSPPSLSSNLHNVSSTARLIMRTTMPLNLRTHSRRPMSITAHSAPALTQDDLKKL 62

Query: 62  AADKAVEYVKSGMVLGLGTGSTAAFVVAKIGELLKTNQLSDIVGIPTSKRTEEQARALGI 121
           AADKAV+YVKSGMVLGLGTGSTAAFVVAK+GELL + QL+DIVG+PTSKRTEEQAR LGI
Sbjct: 63  AADKAVDYVKSGMVLGLGTGSTAAFVVAKLGELLSSGQLTDIVGVPTSKRTEEQARQLGI 122

Query: 122 PLSVLDDHPHLDLAIDGADEVDPDLNLVKGRGGALLREKMVEAASDKFVVVVDDTKLVDG 181
           PLSVLDDHPHLDLAIDGADEVDPDLNLVKGRGGALLREKMVEAASDKFVVVVDDTKLV G
Sbjct: 123 PLSVLDDHPHLDLAIDGADEVDPDLNLVKGRGGALLREKMVEAASDKFVVVVDDTKLVSG 182

Query: 182 LGGSGLAMPVEVVQFCWKYNLVRLQELFKDEGCDAKLRLDADGKPYVTDNSNYIVDLYFQ 241
           LGGSGLAMPVEVVQFCWKYNLVRLQELFK+EG +AKLRL+  GKPYVTDNSNYIVDLYF+
Sbjct: 183 LGGSGLAMPVEVVQFCWKYNLVRLQELFKEEGVEAKLRLNG-GKPYVTDNSNYIVDLYFK 242

Query: 242 TPIKDGLAAGKEISAFEGVVEHGLFLDMATAVIIAGKDGIDIKNK 285
           TPIKDGL AGKEISA EGVVEHGLFLDMAT+VIIAGK+G+D++NK
Sbjct: 243 TPIKDGLGAGKEISALEGVVEHGLFLDMATSVIIAGKNGVDVQNK 286

[Close]

BLAST of Lsi11G004590 vs. NCBI nr
Match: gi|703121349|ref|XP_010102306.1| (putative ribose-5-phosphate isomerase [Morus notabilis])

HSP 1 Score: 446.8 bits (1148), Expect = 2.8e-122
Identity = 233/289 (80.62%), Postives = 255/289 (88.24%), Query Frame = 1


Query: 2   ASLSFISPPSLSSSRH------VSSIANLLLRSSKPLNLSAHCRPLSVHARSVSTLTQDD 61
           +SLS +SPPSLSS+ H       S    L+LR+ +PLN+       +  A+SV  LTQDD
Sbjct: 3   SSLSLLSPPSLSSTHHHYNASSSSFTTRLILRTPRPLNVRTPTS--TTRAQSVPALTQDD 62

Query: 62  LKKLAADKAVEYVKSGMVLGLGTGSTAAFVVAKIGELLKTNQLSDIVGIPTSKRTEEQAR 121
           LKKLAADKAVEYVKSGMVLGLGTGSTAAFVVAK+G+LL T QLSDIVGIPTSKRTEEQAR
Sbjct: 63  LKKLAADKAVEYVKSGMVLGLGTGSTAAFVVAKLGQLLSTGQLSDIVGIPTSKRTEEQAR 122

Query: 122 ALGIPLSVLDDHPHLDLAIDGADEVDPDLNLVKGRGGALLREKMVEAASDKFVVVVDDTK 181
           +LGIPLSVLDDHP LDLAIDGADEVDPDLNLVKGRGGALLREKMVEAASDKFVVV D+TK
Sbjct: 123 SLGIPLSVLDDHPCLDLAIDGADEVDPDLNLVKGRGGALLREKMVEAASDKFVVVADETK 182

Query: 182 LVDGLGGSGLAMPVEVVQFCWKYNLVRLQELFKDEGCDAKLRLDADGKPYVTDNSNYIVD 241
           LV+GLGGSGLAMPVEVVQFCWKYNLVRLQELFK+EG DAKLRLD+DGKPYVTDNSNYIVD
Sbjct: 183 LVEGLGGSGLAMPVEVVQFCWKYNLVRLQELFKEEGVDAKLRLDSDGKPYVTDNSNYIVD 242

Query: 242 LYFQTPIKDGLAAGKEISAFEGVVEHGLFLDMATAVIIAGKDGIDIKNK 285
           LYF+TPIKD +AAGKEISA EGVVEHGLFLDMATAVIIAG +G+D++ K
Sbjct: 243 LYFKTPIKDAIAAGKEISALEGVVEHGLFLDMATAVIIAGTNGVDVQTK 289

[Close]

BLAST of Lsi11G004590 vs. NCBI nr
Match: gi|225451299|ref|XP_002278297.1| (PREDICTED: probable ribose-5-phosphate isomerase 3, chloroplastic [Vitis vinifera])

HSP 1 Score: 441.0 bits (1133), Expect = 1.5e-120
Identity = 233/288 (80.90%), Postives = 256/288 (88.89%), Query Frame = 1


Query: 1   MASLSFISPP---SLSSSRHVSSIANLLLRSSKPLNLSAHCRPL-SVHARSVSTLTQDDL 60
           MA+LS +SPP   SLSS  H ++++   LR+S    L+   RPL S+ A S   LTQDDL
Sbjct: 1   MATLSLLSPPKSHSLSSLHHRNALS---LRTSS--TLTPRTRPLLSIRAFSAPALTQDDL 60

Query: 61  KKLAADKAVEYVKSGMVLGLGTGSTAAFVVAKIGELLKTNQLSDIVGIPTSKRTEEQARA 120
           KKLAADKAV+YVKSGMVLGLGTGSTAAFVVAK+G LLKT QLSDIVG+PTSKRTEEQA +
Sbjct: 61  KKLAADKAVDYVKSGMVLGLGTGSTAAFVVAKLGHLLKTGQLSDIVGVPTSKRTEEQALS 120

Query: 121 LGIPLSVLDDHPHLDLAIDGADEVDPDLNLVKGRGGALLREKMVEAASDKFVVVVDDTKL 180
           LGIPLSVLD HP +DLAIDGADEVDPDLNLVKGRGGALLREKMVEAASDKFVVVVDDTKL
Sbjct: 121 LGIPLSVLDHHPSIDLAIDGADEVDPDLNLVKGRGGALLREKMVEAASDKFVVVVDDTKL 180

Query: 181 VDGLGGSGLAMPVEVVQFCWKYNLVRLQELFKDEGCDAKLRLDADGKPYVTDNSNYIVDL 240
           V+GLGGSGLAMPVEVVQFCWKYNLVRLQELFK+EGC+AKLRL+ DGKPYVTDNSNYIVDL
Sbjct: 181 VNGLGGSGLAMPVEVVQFCWKYNLVRLQELFKEEGCEAKLRLNPDGKPYVTDNSNYIVDL 240

Query: 241 YFQTPIKDGLAAGKEISAFEGVVEHGLFLDMATAVIIAGKDGIDIKNK 285
           YF+TPIKD +AAGKEIS+FEGVVEHGLFLDMATAVIIAGKDG+ +K K
Sbjct: 241 YFKTPIKDSIAAGKEISSFEGVVEHGLFLDMATAVIIAGKDGVTVKTK 283

The following BLAST results are available for this feature:

BLAST of Lsi11G004590 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RPI3_ARATH	2.6e-104	70.42	Probable ribose-5-phosphate isomerase 3, chloroplastic OS=Arabidopsis thaliana G...	[more]
RPI2_ARATH	1.3e-79	63.68	Probable ribose-5-phosphate isomerase 2 OS=Arabidopsis thaliana GN=RPI2 PE=1 SV=...	[more]
RPI1_ARATH	7.2e-78	61.22	Probable ribose-5-phosphate isomerase 1 OS=Arabidopsis thaliana GN=RPI1 PE=1 SV=...	[more]
RPIA_SYNJA	6.6e-55	50.88	Ribose-5-phosphate isomerase A OS=Synechococcus sp. (strain JA-3-3Ab) GN=rpiA PE...	[more]
RPIA_DESAA	3.3e-54	52.19	Ribose-5-phosphate isomerase A OS=Desulfatibacillum alkenivorans (strain AK-01) ...	[more]

BLAST of Lsi11G004590 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LFJ4_CUCSA	3.3e-146	95.77	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G011530 PE=3 SV=1	[more]
W9RQW9_9ROSA	1.9e-122	80.62	Putative ribose-5-phosphate isomerase OS=Morus notabilis GN=L484_024593 PE=3 SV=...	[more]
F6HTS6_VITVI	1.1e-120	80.90	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0030g01900 PE=3 SV=...	[more]
V5N8M2_PHAVU	2.6e-119	80.28	Putative ribose-5-phosphate isomerase OS=Phaseolus vulgaris PE=2 SV=1	[more]
M5VZJ1_PRUPE	2.9e-118	78.52	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009739mg PE=3 SV=1	[more]

BLAST of Lsi11G004590 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G04790.1	1.5e-105	70.42	Ribose 5-phosphate isomerase, type A protein	[more]
AT2G01290.1	7.4e-81	63.68	ribose-5-phosphate isomerase 2	[more]
AT1G71100.1	4.1e-79	61.22	Ribose 5-phosphate isomerase, type A protein	[more]
AT5G44520.1	3.5e-22	30.32	NagB/RpiA/CoA transferase-like superfamily protein	[more]

BLAST of Lsi11G004590 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659070609\|ref\|XP_008455835.1\|	2.3e-148	96.83	PREDICTED: probable ribose-5-phosphate isomerase 3, chloroplastic [Cucumis melo]	[more]
gi\|449442917\|ref\|XP_004139227.1\|	4.7e-146	95.77	PREDICTED: probable ribose-5-phosphate isomerase 3, chloroplastic [Cucumis sativ...	[more]
gi\|1009117613\|ref\|XP_015875411.1\|	1.9e-126	83.51	PREDICTED: probable ribose-5-phosphate isomerase 3, chloroplastic [Ziziphus juju...	[more]
gi\|703121349\|ref\|XP_010102306.1\|	2.8e-122	80.62	putative ribose-5-phosphate isomerase [Morus notabilis]	[more]
gi\|225451299\|ref\|XP_002278297.1\|	1.5e-120	80.90	PREDICTED: probable ribose-5-phosphate isomerase 3, chloroplastic [Vitis vinifer...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0004751	ribose-5-phosphate isomerase activity

Vocabulary: **Biological Process**
Term	Definition
GO:0009052	pentose-phosphate shunt, non-oxidative branch

Vocabulary: **INTERPRO**
Term	Definition
IPR020672	Ribose5P_isomerase_typA_subgr
IPR004788	Ribose5P_isomerase_typA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015976	carbon utilization
biological_process	GO:0031348	negative regulation of defense response
biological_process	GO:0006766	vitamin metabolic process
biological_process	GO:0006636	unsaturated fatty acid biosynthetic process
biological_process	GO:0006569	tryptophan catabolic process
biological_process	GO:0009862	systemic acquired resistance, salicylic acid mediated signaling pathway
biological_process	GO:0019748	secondary metabolic process
biological_process	GO:0009697	salicylic acid biosynthetic process
biological_process	GO:0009409	response to cold
biological_process	GO:0010200	response to chitin
biological_process	GO:0010363	regulation of plant-type hypersensitive response
biological_process	GO:0043900	regulation of multi-organism process
biological_process	GO:0010310	regulation of hydrogen peroxide metabolic process
biological_process	GO:0019253	reductive pentose-phosphate cycle
biological_process	GO:0006612	protein targeting to membrane
biological_process	GO:0019684	photosynthesis, light reaction
biological_process	GO:0000165	MAPK cascade
biological_process	GO:0009052	pentose-phosphate shunt, non-oxidative branch
biological_process	GO:0009595	detection of biotic stimulus
biological_process	GO:0009735	response to cytokinin
biological_process	GO:0009108	coenzyme biosynthetic process
biological_process	GO:0019344	cysteine biosynthetic process
biological_process	GO:0009106	lipoate metabolic process
biological_process	GO:0050832	defense response to fungus
biological_process	GO:0006546	glycine catabolic process
biological_process	GO:0009684	indoleacetic acid biosynthetic process
biological_process	GO:0019288	isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
biological_process	GO:0009695	jasmonic acid biosynthetic process
biological_process	GO:0009867	jasmonic acid mediated signaling pathway
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0009570	chloroplast stroma
cellular_component	GO:0009941	chloroplast envelope
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0004751	ribose-5-phosphate isomerase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi11G004590.1	Lsi11G004590.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004788	Ribose 5-phosphate isomerase, type A	PANTHER	PTHR11934	RIBOSE-5-PHOSPHATE ISOMERASE	coord: 2..284 score: 2.1E
IPR004788	Ribose 5-phosphate isomerase, type A	PFAM	PF06026	Rib_5-P_isom_A	coord: 103..278 score: 3.5
IPR004788	Ribose 5-phosphate isomerase, type A	TIGRFAMs	TIGR00021	TIGR00021	coord: 56..279 score: 4.3
IPR020672	Ribose-5-phosphate isomerase, type A, subgroup	HAMAP	MF_00170	Rib_5P_isom_A	coord: 53..282 score: 30
None	No IPR available	GENE3D	G3DSA:3.30.70.260		coord: 194..262 score: 1.1
None	No IPR available	GENE3D	G3DSA:3.40.50.1360		coord: 55..193 score: 9.3
None	No IPR available	PANTHER	PTHR11934:SF0	RIBOSE-5-PHOSPHATE ISOMERASE	coord: 2..284 score: 2.1E
None	No IPR available	unknown	SSF100950	NagB/RpiA/CoA transferase-like	coord: 52..194 score: 3.49E-41coord: 225..235 score: 3.49
None	No IPR available	unknown	SSF75445	D-ribose-5-phosphate isomerase (RpiA), lid domain	coord: 185..265 score: 7.98

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi11G004590	Csa2G011530	Cucumber (Chinese Long) v2	culsiB098
Lsi11G004590	CSPI02G03100	Wild cucumber (PI 183967)	cpilsiB096
Lsi11G004590	Cucsa.133370	Cucumber (Gy14) v1	cgylsiB205
Lsi11G004590	CmaCh05G011930	Cucurbita maxima (Rimu)	cmalsiB715
Lsi11G004590	CmaCh12G011140	Cucurbita maxima (Rimu)	cmalsiB159
Lsi11G004590	CmoCh05G012160	Cucurbita moschata (Rifu)	cmolsiB706
Lsi11G004590	CmoCh12G011320	Cucurbita moschata (Rifu)	cmolsiB148
Lsi11G004590	Cla019816	Watermelon (97103) v1	lsiwmB107
Lsi11G004590	MELO3C004370	Melon (DHL92) v3.5.1	lsimeB115
Lsi11G004590	ClCG02G016530	Watermelon (Charleston Gray)	lsiwcgB098
Lsi11G004590	MELO3C004370.2	Melon (DHL92) v3.6.1	lsimedB123
Lsi11G004590	Cla97C02G042310	Watermelon (97103) v2	lsiwmbB087
Lsi11G004590	Bhi06G001510	Wax gourd	lsiwgoB108
Lsi11G004590	CsGy2G003210	Cucumber (Gy14) v2	cgyblsiB089
Lsi11G004590	Carg17590	Silver-seed gourd	carlsiB654
Lsi11G004590	Carg23443	Silver-seed gourd	carlsiB271
Lsi11G004590	CsaV3_2G004240	Cucumber (Chinese Long) v3	cuclsiB108

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi11G004590	Cucurbita maxima (Rimu)	cmalsiB098
Lsi11G004590	Cucurbita moschata (Rifu)	cmolsiB084
Lsi11G004590	Cucurbita pepo (Zucchini)	cpelsiB003
Lsi11G004590	Cucurbita pepo (Zucchini)	cpelsiB074
Lsi11G004590	Cucurbita pepo (Zucchini)	cpelsiB659
Lsi11G004590	Wild cucumber (PI 183967)	cpilsiB510
Lsi11G004590	Cucumber (Chinese Long) v2	culsiB498
Lsi11G004590	Watermelon (Charleston Gray)	lsiwcgB077
Lsi11G004590	Watermelon (97103) v1	lsiwmB090
Lsi11G004590	Cucumber (Gy14) v2	cgyblsiB467
Lsi11G004590	Cucumber (Chinese Long) v3	cuclsiB532
Lsi11G004590	Watermelon (97103) v2	lsiwmbB110
Lsi11G004590	Wax gourd	lsiwgoB139
Lsi11G004590	Bottle gourd (USVL1VR-Ls)	lsilsiB050