Lsi11G000990 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi11G000990
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Nucleic acid binding/RNA binding protein
Location	chr11 : 1048043 .. 1057296 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TAGTTGTAGGCTTATAGCCCCCCTCCCTAGTCCCCTACTTTGGGCCGACCCAGATTCCATAGCCCGAACACTGAGCCTCAAAAAGGGCTGCGTTCTTAATCGCGGGGAAGGTGGCGTTGTGTGTGCCTTCTCCATCATCCTCTGATTCTCGTTCTGATTTTTCCAATTTTACGCTCTTTTTCTTCCTTCTCCTCCTCTGTTCATCCTTCCAAGATATTCTCCCACATAATTCTGTAGTTTCAACTTTTGAATTCATCTTCTGCCAAAATGCAAGGAGGAGAAGATGTAAGCATTGAAGAGTTGGCTAATAATCTCTCCACCTACAAAGACCAGCTTCAGCAGGTACTCCTCTTCGCCATTTCTTTCTGGCTAACAATCCGCTCATTCTTTTCTTTTCTTCCTTTTTTTATGATTTTGTTTCAGTTACTGGGGTTCTCTTTTTTCAAATTTATTCAAAGCAAAATTGGATATTTATGATCTTGTAAACCTTTGCCGCTGTCATTCTTGAGTTCTTCCCAGTAGTTTGTATCTGAATTAGGGGTTTGCTCACCACCTTGGACTATTGCGGTGCTAAGTTGCAGCGAATCCGGAGGAAATGGAACCTGTATTGGATAATTGCATTAAACCTAGAAATTTAGAACCTAATCCACATATAATTGCATTAAACCTAGAAATGTAGAACTTAATCCACATAAGTTAGTATCAAGATTCTTTCTAGGACTTTCCAGTTTAATGAGGTTTTATCTGTCCTTTTTTATTTTTTTATTTTTTACACTTAGGATACTGAAAATCTTGAGCAGGGTTTAAGCATCTGAATGATTTTTACATTTGTATGGCGAATTCTTAATTGTCAGTCACTTCCTCTACCTAACTACATGAATTCTTGGCTTCCTCACTTTGTTTCATTTTGTATATAAGTTTCTGGGTAAAATAACTTCTTTCTATCCTGATCCAGGTCAGACAGCTGTTAGATGATGATCCTAGCAACTCTGAATACATCGATATGGAAAAGGAGCTTGAAGAGGTAGTTTGTTTTTGTCCTCCTAGTATGCCCATCCTTCCTTGTGAACTCGTCGCATGTGTATGGTTTAGCACTCTTCATATTCCCGCTGAATGTATTATTAGGTTCAGCTTCTGCTGTAGCACTAAGGATCAGAGAACGCTCAGAACTATTATTTTTATTACGTGGGTTTCCAGTCAAGTTTGCTTTCTTTCTTTTGTTTGTCTTCCTTTTTCCTTCTAAAGGAATCATGTTGTTGAAATAAGAAAGAGGTATGGCCCCTGTGGAGATTGTCATTTTCATTTTTGGGAGGAAAAGGTGAGGGGGTTGTATCTTTCATTTATGTGCTCCAGAGCTCTAATCTCTGGTCATAAATGATCATTATTGGATATGTGTGAAAATTTGAAACTTCATCAAGATGCACATCACTTCTACCTTGGTTCCCTTGCAGGTGTGCTAATATTCGTGATGGCCAGTCTGCTCTTCCCCTGACCTCCTTTCAGATGCTGATCCTGAGATTTAAGTTCTTGTGTTTATTTCTTTTTTTTTTTTCTTTTTTTTTTGGGGACAAATACCTGCTCTTTATGAAATTTACCGTTGGAGATATATTTTAACAGAAACATTGGACTTGGGCTAAAGTTGCAGTAATGCAGGTTATCGCTTTGACGGAAGAACTTCTTTCAACAGCAAAGCAAAATGAGATTTCTGGATCAAATGTAGAAACAGGTGATGACAGCGCATCAATTAGTTTCCAGCAGCCTAAAGAAAATGAGATGGTAAGTTCACATTTGTCCTCAGTTTGCACATTGCGTTTCTCTGCTGGAAGCAACATAATGTTATAGATGGTTATAGCTTTAGATTTAACGCACACTGCTTGGATCTCTGTGTGGTTCGTTGTATATGTTGGTATTGTTTTTGTGTACGTGCTCACATGTGCAACTGCAAACACATTTGTGTTTGTGTTTTGAAGGCTTAATATCTTTTCCTTATTTGGAAGCATACCTCGTAACCATTTACTGGCATGTGGTTTTGTTTCATAATCTGAAAGACAATGTCCTTGAACACAACACTGAAAACCCACTAAAGATTGGACATGGAGAACAACTTCCACCACAAGCCTTTGAATATCAACAACCAAAGGAGAGATGTTGGGACCCATCATTATCCGCCAAATGAGAGGGCAAATTGAGGGTAACAAACAATGAGAAGGAAACTTTCTTTGGAGTGTAAGAGAGCAGTTGAGAGCTCCAAAGATCATAACCCAAATAATGAGGTTTACTCGACGAGGGCATTTTGATTTCCATAGAGCTTTGTAAAGAAGTTTATACATTGAAGTAGATGCCGACAAGTGCTTGTAAAGAGATTTAACTGAAAACAAACCTGAAGACTCCAACTTCCAACTTCTTGAATCTGGGCGATCAAGAACTGTTCGGCCTTTTGAAGAACCCAATAAAATATGAAAATCCAAAGCTTTCTCATCCTTTAAAAACCGTTTAAAAGAGATAGACAAAGAGAGAGTGGTTGCATCCCACTACTCCACTGCTGAACCATTTGGATTAGTAGAAATCCTTAGAAGACTTGGGAATAAAGATCCCAAATTAGAATTATCCAACCATGGGTCATGCCAAAAAGAGATCCTGCTGCCATTTTCAAGTTTAAACAAAGCAAGAGAATCCTAAGTCTAACCCTTTGGAGGGCTTCTCTTGTAAGTCGTTCTTGTCATTTGATATTTTATGGAAGATTAAGATTCCAAAGAACGTCAAGTTCTTTTCTTGGAAAGTTTTGCTTGGTCGTGTGCAGTGTTTTAAAAAGCCTTCCCGGACATATGCCTAGGCGCGCCTAGACTCAAGGCACAAGTCTTTCGCCTCTCCAAGTAACCAAGTTGCCCCATTCATTTTTTTCATAAGATGCAAATTTTATTGATGTATAAAACTTACAAAAGAGGGTGAAGCCCTAACCAAAAGAGTTACAAAATATTTCTCAAATTGGTTAAAAGAGAGGTGCATGTACTCCAAGACATAGCAAGGAGAAGAATATGATCAAATAAACTATCGAAGGTGCTTTCGTATCTTGAAGGAGGAGGTTGTTGTGCTCTTTCCAAGTTGTCCACAAAAAACTCGAATTAGATGCATCCAAAGGATTCTTTTTCCCTCTGTAAATGGGCGGCCAAAGAGTAATTGAGCAAAATGTTGATATCACTACAAATTATGGGTTCCATCTAAAAGCAACAATCAATTCTTTCCTAAATTTGTTGGCAAACTGGCATTTGATGATGAAGTGTCTTTGAGAAAGGGTGATAGAGGACCACCTTGACGAAGGCCTCTGGTGGCTAAGATCTTACCTTCAGGGCGGCCATTGATAATTATGGAGAAGTTTGTTCATGAAATGCACTCCCTTAGATATCTTCTCCATGTTGAACCAAATCCCTTGGCATTGTGGATTAAATCAAGGAAATCCCAATCCACTTTGTCATAAGCCTTTTCAATGTTAAGCTTAACCACATTGTCATTTCTTTTCGTTTTGTGATATTCATTGATGGTTTTGTTGGCAACCAAGGATGTATAAAGAATTTGTCTTCCCTCCACATATCCACAATACCTGATACATCCTTGATTGCCAACACTCTAACACTCTCACTTACTTGTGATCTGTTTGGATACTCCTTACTATGATTCCAAAATAACGAACAACGATTACAAGTTCCAAAGTAAATTACAAACTATCTTAAAAACAAAGAGAAAGTAAAGGATAACCCTAGCCAATTTCGGAGGGCTGGTATCTCTTCCAAAAAGGCTTTAACAGTCCTTTTCAACCAAAATGAGCATAGCTCAATTGGCATTCGAGAGTATTAGTAACTACGAGGTTTGTGGTTCGAATTTCCCAACTCCCAAGTGTTGTATTGAAAAAAAAAAGTTATTTTCTACAAAATCCCAGATAGCGGCTCCCTCACCCCTTCCCCAAACACTATAATGACATTCTCTCGCATTCGTACATGGTTACACGATTGAACCACATATTGTCTTGGGTGAAGTACCCTTCTTACCTCTCCTCATATATACTTTCTTAACCAGAGGCCTAAGACGATCATCTTTTTAAATTGAGACCTTAGAAGCACAAACACAAATATGGATAAGGAACATAGATAAGACAGGACATGACGATGCATCAGTTTCTAAAAAACTAGGATACAAATATGTTGGGGATACACTATGTAAATATATTTTCAATTTTTTAAAAATATATATATGTAAATTTAACAAAAAGATACAAATACTAAATGAAATCCACTCAAAAGTGTTTAATAGCTTACGAAAACTAACTAGTAAGTTGAGGAAATAAAGAGATTAAAAAAACATGTAATGTACTGTAGTTTGCAGACCATCCACAAGAAAAAGAAATTATTTGAAAAAAAAAGTTGCATTTAATGCTTGGCAGCAAAGAAGTACTCAATCAAATTTAAATAATATTTTATTATTATTTAATTTATTCCATTCACATATTTCAATGTGAGGCTTTTCATTTTTTTAATATTCTCAAGTGTTCGGACTAGTTTGCGCGCACCTCGACTAGTCTCACCCTCGCTCTTCAACATGTTGGCACCAAGGAAACTCATAGGATATTTAGTTCTAGGTAGGTGGGTACGATAGATTGAACTCATTCCCTTTAAGTTCTTTATTGAACCTATGGCCCTTATTGGTGGGCACTATGTCAACCCATGGTGGTTGTGAGGCTTCTCATTTTCGTTTTCTATTCTTTCTTCTTCCACACTCCACTCCATTTCGTTTTTGTACATTGAGACCACTCTCCATCTCTTTTTCCAAACTCCTCCTTTTTCTATTCTTCCATTTTTTCCCTTTATTTCAGCCGTGCTAATCTTTGGCATTTTTTTCCATTTCCAAACTCTCCACTCTTCTTCTCTGGTTGTTTGGTCCACACTAATTGTCGGTATTTTTAGTTTCATTTTTCATTTTCTATTTTACGGATGTTTTTGAATGTGGCTGGGCTTTCTTCCTTCCTTTAAAATTTTCTTCAACATGTCCATCAATGTGTCCTAATGTATCTCCAGCATGCTGGAAATTCTAAAAAGAAAGTGGGACACATAAAGTTGCACATCGGAGATGTGTCTGGACGTATCCTTGTCCACTATTTTACCACTTTCGGCTTTCACCATTTTCACTCCACTGTATGCTCACCTTCAAATTAGCCTCCACTTGACAATCTCTGTCCCTGAAGCAGCAACCAAAATTACGTGTTCTATTCTTTTCCTTTCACCCCTATAAGCTAAGGAAGGAGGGGCCAACATTATTATTTTTTGCCCCTTTCAATCGGGAACCTTGCTGTCACCGTCAGCCACCTACTGATGTTGTTGGTAGTTGTTCCCCTCTATGGTAGATGTGCACTTCCCATAATAAGTCTCAGACTAATTTGGTATAGGGGTAACTCTTTTGGTGGAACACTTTTTTCCCCCTCAAATGTCTTGTTAGTTTTTATCTGACCTTATTGTGTTCTATTATTTGAGAGTTACATGGACTGTTAAATCTGAAAAAATTATATCAAGTATAAGCAATAATGATCCTATTTTCAAGCATTTGCATTCCCATTCCCGCGTACCGAAAGCCAACAGTGGTATCAGTGTAATGTCTACTATTAAACATTTAATTGCTTTTACTTGGGTCAATCTTTCAAAGCCTTTCGTAACTACCCTTTGTTTTCGTTCTCAGCCAATTGGATAGCCTTTTGTTATTTATTCATTTTTATTTTGTCTCTGGAGGATTCCTAATTCTCCTTTATTTCTCTGTACCTCTCTTTTTAAATTTTAAGACATACTGCAAAGAACAATTAGAATGGTTTGACATGGAAGCAGTACCACTCAAGAGACTTCATAAATTGCTTGGCAGTTGAATCAACCACCTTCCTTTGAATTGTATTTCAATATTTTATGCCATTCATGTACGTAATGCTTACATGGAAGCGTGTGTTGAGATGTTTAGTGATCTAATATTCTATGTTCTTGGTATGCAGGAAGCTGGAAGCATGTCTGATTATCACGAGAAATTTCCTATTGGATCAAAAGTTCAAGCCGTTTGGAGTGAGGACGGGGAGTGGTGAGTAAAAAAATGGAGAAAATTTACAACCCTACTTAAACAGAACAGGTTGTACAGCTGTGCCCTTGGGTTCTAAAAAAGGAATTTTATCCTCCAACTTATTCTCTTTTTAATTAGAAAAGAGACGTTGAAGATAAATGGTGTTTGAAAGAGATGTGTGCTTGAAAGTTTACGAATTACTGGGGCATGTACTTGAGAGTATTGAAAGGACTCTAGTGCCAAAATTATCTGTGAGCATGGAGGGGTTGTGTTTTTTGTTTTTGTTTTCATTGAGATTTTGACTATCCAATATAAGAAGCTGTGACATTTCCATAAAGTTAGTTTTGCAAAATGGATGTTAATGAAAATCAGGTTATTGTTCTACTATGACAGCAGCTAAGCTGCCTCAAAATTGGCCAAACTTTGTAAATTTATTTCATTAATTCCTCTTAAAGAAAAACCTTAGCGTCTTTGTAGAGAAAAATGGGATGAAAAAACATGTAAATTTAGAGTTTGTTTAAACCAATTTGATACCACCATGACTATAATAGCCATTCCCTTTGTGAAAATTATGAACCTAAACTCGTCTTCATCTCTCTCCTCCAGTTTTCAGTTCATTGTGTCTGTTCAGTAAGGAGGGTTGGTCCCTAGTCAGGTTTAATGCGTCTCTTTGACCTTTAATTACTGAAGAGTTGTATAACGTTTCGCGCGATCTTACTTTTTAGATTAGAGCCCCTTTCTGCATAGCTGGTTCTTTGAGGTTCCCTTTCTCGGGCCATTTTTTATATGCCGCTCTTGTTCTTTCATGTTTCTTAATGTAACCATTTTTTATTGTAAAAAGATTTTCTGTTCAGCTATCTTGTTTTGAGCCTTCGAAGTAACACCTTCACCTGGTCTCTTATCAAAATGAATGATAAGTCTATGAGAATAAGTCTTAGTCCGTTGAAGCTGATTTTAGTTTCTAGGTCTCCAAGCATATACTAATTTTGTTGATGGACGCATTTTTTTACTTCTCTTAGCTTCAATGTTTTCTGCCATCTTCTTTGAAGCTTTGGTTTTTTTCCCTTTTTGTTTAACTACTTTTCCTTCGACTGTTTTTCTAATAGAAACAAAAATTTTCCCTTGATTGTGTTCAATTGTATGAATACTCAGGTACGATGCTACAATTGAAGCCCACACTGTAAATGGTTTCTATGTTAGTTTTGATGGTTGGGGAAACAAGGAAGAGGTAAGGTTTCTACACCTGCAGTTTGCATGACTGTTTTGATTATTTTTAAGAGTGTTATCTTTTATCAAGGAAAAAAAAGAGTATTCTAGTATTTCTTCAAAAAGATCTGGGGCTGATTCTCTCTAAATTAACTAGAAATGTGAGGAATTGGTTCTTGGTTTGTAAATACGGGACATTTCCCTTTGGATGGGTTCAATCCGTAGGATTTAGGACTAAAATCGTATGTAATAATTCTTGGAAGGCCATCTTCGTTGGTTTTGTTTGTTGGATTAGCTGGTATAAATACCACGGTTTCCTCTTTGTAAGACTTGATTGAAGATTACTAAAATTTTTGCATTTTGGTTTACTCTAGTTTGCCTAGAAAACTCATAGGTATCTTGAACTCATTTTCTCTAAACTCTTTGTTATTTATATTGGCCCTAATTATTACTAGGCCAATAACTAATAAGGTATTGTTTCTTTTTGAAAAGAAAAAAGGGGGAGGCAACTGCAAGTACAAGAAGAGTAAGCATGAGGGAGAGCTCAATGAAGTTTAGGAGTTCGAATCATAATATACATATTTATGAAGTTTAGGAGTTCTATACACACACACATACGTATTACGCACTTTACGTACATACACACATATACCTTTTAAATGGAACTATTGGCCTTTTTCTTAAGTAGTGAGTCAGTTGCACCAATTGTCAACAGTTATGATATCTACTAATTTTAGGTGGACCCTGCAAATGTAAGAACAATCCAACTGGAAGTTAATGCTTTGCTTGAAGCAGAAAGAATGGCTGAAGCTACAAAGCAGGCTATCAAGCGCAAGATTGCTCAAGCTGCTTCTGTTGACTTCCAATCACGAAATTTACCATCAAAGCTTCGAATTGAACCTGATGATCCTGAGGACGTAGTAAGTAGTTAATAATCTTAATATTTCATGACCACTAATTTATTAATCTAGTAATTAGTTTGGTATTTAAGACATTTATAAGTGCATTTGTTTTGTATCTCTGGTGTTTGTATAGAAAGCCACCAAACGCAAGAAAATACATGCTTTCAAGTCAAAGATGCGGGTAGAACAGCTTGAAGTTACCCAAAATAAACGGCAGAATGCTTGGCAGCAGTTTCAATCAGCAAAAGGCAAGTCTAAGAAGGTAAGTCTTGTGGAATCTAGCATTTTGTTGAATATTCATGTGTTTTATAAAGAGGCCCTACAGGTATAAGGGAAAACCCCAAGGCCAAAGGATGTTTTTGAAAAGTACTTCAATTTACATTAATCAAAACAGAATAATAATAGCTAGAAGGGTTTAAGAGGAGATATCCTTGCAATTGCATTTTTCCTCTTCGGCACCATCTGATGACGATTAATAAATATGAATTCTCAGATTGGTTTCTTCTCTGGGCGAAAGAGGGAGAGCATTTTCAAGTCTCCGGATGATCCGAATGGCAAGGTTGGTGTGACTGGAAGTGGGAAGGGTTTAACCGAGTTTCAGAAGAGGGAAAAACACTTGCATCTCAAGGGTGCAACCGTGGAGATGGATGACTAAAGTGAGGTTAGATTTTGTAGGTTGCTGCTTTCTTTGTATGTAACTTCATTTAGTATCCAATCCATTTGATGCATCTGTGTGGTTAGATTCATATAAATGTGGTTTATACCCGTACTAAAAGTGTAGGTGGGGGGATTCCCTCCCGGTAACATAGTGTTTTCTTATGAGAATGGTTACGAAACCTAGCCATGACAGGATCATATTTTTTTTTTCCTTTGACGTTTTTATGTTTACTTGTTCTATTTCCTTAAAAGTAATGGGATGTGCACATTTATGTGAAAAAACCAATCGATTTTGTTCGAATTTCTACTCCCACTCCCACTCCCACTCCCACTACCAACTTTCTTTAGGAATGATCCTAGGTTGTTTAAGGGAGCTTACTTTATAATATAGCATGTGGAGGGGAG

mRNA sequence

TAGTTGTAGGCTTATAGCCCCCCTCCCTAGTCCCCTACTTTGGGCCGACCCAGATTCCATAGCCCGAACACTGAGCCTCAAAAAGGGCTGCGTTCTTAATCGCGGGGAAGGTGGCGTTGTGTGTGCCTTCTCCATCATCCTCTGATTCTCGTTCTGATTTTTCCAATTTTACGCTCTTTTTCTTCCTTCTCCTCCTCTGTTCATCCTTCCAAGATATTCTCCCACATAATTCTGTAGTTTCAACTTTTGAATTCATCTTCTGCCAAAATGCAAGGAGGAGAAGATGTAAGCATTGAAGAGTTGGCTAATAATCTCTCCACCTACAAAGACCAGCTTCAGCAGGTCAGACAGCTGTTAGATGATGATCCTAGCAACTCTGAATACATCGATATGGAAAAGGAGCTTGAAGAGAAACATTGGACTTGGGCTAAAGTTGCAGTAATGCAGGTTATCGCTTTGACGGAAGAACTTCTTTCAACAGCAAAGCAAAATGAGATTTCTGGATCAAATGTAGAAACAGGTGATGACAGCGCATCAATTAGTTTCCAGCAGCCTAAAGAAAATGAGATGTTTGCGCGCACCTCGACTAGTCTCACCCTCGCTCTTCAACATGTTGGCACCAAGGAAACTCATAGGATATTTAGTTCTAGGTACGATGCTACAATTGAAGCCCACACTGTAAATGGTTTCTATGTTAGTTTTGATGGTTGGGGAAACAAGGAAGAGGTGGACCCTGCAAATGTAAGAACAATCCAACTGGAAGTTAATGCTTTGCTTGAAGCAGAAAGAATGGCTGAAGCTACAAAGCAGGCTATCAAGCGCAAGATTGCTCAAGCTGCTTCTGTTGACTTCCAATCACGAAATTTACCATCAAAGCTTCGAATTGAACCTGATGATCCTGAGGACGTAAAAGCCACCAAACGCAAGAAAATACATGCTTTCAAGTCAAAGATGCGGGTAGAACAGCTTGAAGTTACCCAAAATAAACGGCAGAATGCTTGGCAGCAGTTTCAATCAGCAAAAGGCAAGTCTAAGAAGATTGGTTTCTTCTCTGGGCGAAAGAGGGAGAGCATTTTCAAGTCTCCGGATGATCCGAATGGCAAGGTTGGTGTGACTGGAAGTGGGAAGGGTTTAACCGAGTTTCAGAAGAGGGAAAAACACTTGCATCTCAAGGGTGCAACCGTGGAGATGGATGACTAAAGTGAGGTTAGATTTTGTAGGTTGCTGCTTTCTTTGTATGTAACTTCATTTAGTATCCAATCCATTTGATGCATCTGTGTGGTTAGATTCATATAAATGTGGTTTATACCCGTACTAAAAGTGTAGGTGGGGGGATTCCCTCCCGGTAACATAGTGTTTTCTTATGAGAATGGTTACGAAACCTAGCCATGACAGGATCATATTTTTTTTTTCCTTTGACGTTTTTATGTTTACTTGTTCTATTTCCTTAAAAGTAATGGGATGTGCACATTTATGTGAAAAAACCAATCGATTTTGTTCGAATTTCTACTCCCACTCCCACTCCCACTCCCACTACCAACTTTCTTTAGGAATGATCCTAGGTTGTTTAAGGGAGCTTACTTTATAATATAGCATGTGGAGGGGAG

Coding sequence (CDS)

ATGCAAGGAGGAGAAGATGTAAGCATTGAAGAGTTGGCTAATAATCTCTCCACCTACAAAGACCAGCTTCAGCAGGTCAGACAGCTGTTAGATGATGATCCTAGCAACTCTGAATACATCGATATGGAAAAGGAGCTTGAAGAGAAACATTGGACTTGGGCTAAAGTTGCAGTAATGCAGGTTATCGCTTTGACGGAAGAACTTCTTTCAACAGCAAAGCAAAATGAGATTTCTGGATCAAATGTAGAAACAGGTGATGACAGCGCATCAATTAGTTTCCAGCAGCCTAAAGAAAATGAGATGTTTGCGCGCACCTCGACTAGTCTCACCCTCGCTCTTCAACATGTTGGCACCAAGGAAACTCATAGGATATTTAGTTCTAGGTACGATGCTACAATTGAAGCCCACACTGTAAATGGTTTCTATGTTAGTTTTGATGGTTGGGGAAACAAGGAAGAGGTGGACCCTGCAAATGTAAGAACAATCCAACTGGAAGTTAATGCTTTGCTTGAAGCAGAAAGAATGGCTGAAGCTACAAAGCAGGCTATCAAGCGCAAGATTGCTCAAGCTGCTTCTGTTGACTTCCAATCACGAAATTTACCATCAAAGCTTCGAATTGAACCTGATGATCCTGAGGACGTAAAAGCCACCAAACGCAAGAAAATACATGCTTTCAAGTCAAAGATGCGGGTAGAACAGCTTGAAGTTACCCAAAATAAACGGCAGAATGCTTGGCAGCAGTTTCAATCAGCAAAAGGCAAGTCTAAGAAGATTGGTTTCTTCTCTGGGCGAAAGAGGGAGAGCATTTTCAAGTCTCCGGATGATCCGAATGGCAAGGTTGGTGTGACTGGAAGTGGGAAGGGTTTAACCGAGTTTCAGAAGAGGGAAAAACACTTGCATCTCAAGGGTGCAACCGTGGAGATGGATGACTAA

Protein sequence

MQGGEDVSIEELANNLSTYKDQLQQVRQLLDDDPSNSEYIDMEKELEEKHWTWAKVAVMQVIALTEELLSTAKQNEISGSNVETGDDSASISFQQPKENEMFARTSTSLTLALQHVGTKETHRIFSSRYDATIEAHTVNGFYVSFDGWGNKEEVDPANVRTIQLEVNALLEAERMAEATKQAIKRKIAQAASVDFQSRNLPSKLRIEPDDPEDVKATKRKKIHAFKSKMRVEQLEVTQNKRQNAWQQFQSAKGKSKKIGFFSGRKRESIFKSPDDPNGKVGVTGSGKGLTEFQKREKHLHLKGATVEMDD

Homology

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BLAST of Lsi11G000990 vs. Swiss-Prot
Match: SPF30_DANRE (Survival of motor neuron-related-splicing factor 30 OS=Danio rerio GN=smndc1 PE=2 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 2.5e-07
Identity = 79/300 (26.33%), Postives = 122/300 (40.67%), Query Frame = 1


Query: 10  EELANNLSTYKDQLQQVRQLLDDDPSNSEYIDMEKELEEKHWTWAKVAVMQVIALTEELL 69
           EEL   LS YK QLQQV   L  DP N + + ++K+L+E            VI LT++LL
Sbjct: 3   EELMKQLSNYKAQLQQVEAALSIDPDNEDLLKLQKDLQE------------VIELTKDLL 62

Query: 70  STAKQNEISGSNVETGDDSASISFQQPKENEMFARTSTSLTLALQHVGTKETHRIFSSRY 129
           ++                       QP E      T +S T+A  H      H + +   
Sbjct: 63  TS-----------------------QPAEGT--TSTKSSETVAPSHSWRVGDHCMATWSQ 122

Query: 130 DATI------EAHTVNGFY-VSFDGWGNKEEVDPANVRTIQLEVNALLEAERMAEATKQA 189
           D  +      E    NG   ++F G+GN                         AE     
Sbjct: 123 DGQVYEAEIEEIDNENGTAAITFAGYGN-------------------------AEVMPLH 182

Query: 190 IKRKIAQAASVDFQSRNLPSKLRIEPDDPEDVKATKRKKIHAFKSKMRVEQLEVTQNKRQ 249
           + +K+ +    D       SK  ++ +  E  K   +KK+       R+++LE  +  ++
Sbjct: 183 MLKKVEEGRIRDEIDGKPKSKKELQAEQREYKKKKAQKKVQ------RMKELEQEREDQK 229

Query: 250 NAWQQFQS-AKGKSKKIGFFSGRKRESIFKSPDDPNGKVGVTGSG---KGLTEFQKREKH 299
           + WQQF + A  K+KK     G+ + SIF SP+  NGKVGV   G   K +T++    K+
Sbjct: 243 SKWQQFNNKAYSKNKK-----GQVKRSIFASPESVNGKVGVGTCGIADKPMTQYNDTSKY 229

[Close]

BLAST of Lsi11G000990 vs. Swiss-Prot
Match: SPF30_XENTR (Survival of motor neuron-related-splicing factor 30 OS=Xenopus tropicalis GN=smndc1 PE=2 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 2.5e-07
Identity = 83/296 (28.04%), Postives = 127/296 (42.91%), Query Frame = 1


Query: 10  EELANNLSTYKDQLQQVRQLLDDDPSNSEYIDMEKELEEKHWTWAKVAVMQVIALTEELL 69
           E+LA  L+ YK QLQQV   L  +  N + + ++K+L+E            VI LT++LL
Sbjct: 3   EDLAKQLAGYKAQLQQVESALTANGENEDLLKLKKDLQE------------VIELTKDLL 62

Query: 70  STAKQNEISGSNVETGDDSASISFQQPKENEMFARTSTSLTLALQHVGTKETHRIFSSRY 129
           S+           ET DD+          ++M A  S S  +  + +            Y
Sbjct: 63  SSQPS--------ETADDAC---------DDMSASGSQSWKVGEKCMAVWSDD---GQWY 122

Query: 130 DATI-EAHTVNG-FYVSFDGWGNKEEVDPANVRTIQLEVNALLEAERMAEATKQAIKRKI 189
           +A I E    NG   ++F G+GN E     N+R ++       E  +  E          
Sbjct: 123 EAEIEEIDEENGTAAITFAGYGNAEVTSLLNLRPVE-------EGRKAKE---------- 182

Query: 190 AQAASVDFQSRNLPSKLRIEPDDPEDVKATKR-KKIHAFKSKMRVEQLEVTQNKRQNAWQ 249
                    S NLP   +      E + A +  KK  A K   R+++LE  +  ++  WQ
Sbjct: 183 --------DSGNLPMSKK------EMIAAQREYKKKKALKKAQRIKELEQEREDQKVKWQ 230

Query: 250 QFQS-AKGKSKKIGFFSGRKRESIFKSPDDPNGKVGVTGSG---KGLTEFQKREKH 299
           QF + A  K+KK     G+ + SIF SP+   GKVGV   G   K +T++Q   K+
Sbjct: 243 QFNNKAYSKNKK-----GQVKRSIFASPESVTGKVGVGTCGIADKPMTQYQDTSKY 230

[Close]

BLAST of Lsi11G000990 vs. Swiss-Prot
Match: SPF30_PONAB (Survival of motor neuron-related-splicing factor 30 OS=Pongo abelii GN=SMNDC1 PE=2 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 5.6e-07
Identity = 84/298 (28.19%), Postives = 128/298 (42.95%), Query Frame = 1


Query: 10  EELANNLSTYKDQLQQVRQLLDDDPSNSEYIDMEKELEEKHWTWAKVAVMQVIALTEELL 69
           E+LA  L++YK QLQQV   L  +  N + + ++K+L+E            VI LT++LL
Sbjct: 3   EDLAKQLASYKAQLQQVEAALSGNGENEDLLKLKKDLQE------------VIELTKDLL 62

Query: 70  STAKQNEISGSNVETGDDSASISFQQPKENEMFARTSTSLTLALQHVGTKETHRIFSSR- 129
           ST     ++ S+        S +  QP  +                VG K    I+S   
Sbjct: 63  STQPSETLASSD--------SFASTQPTHS--------------WKVGDK-CMAIWSEDG 122

Query: 130 --YDATIEA-HTVNGFY-VSFDGWGNKEEVDPANVRTIQLEVNALLEAERMAEATKQAIK 189
             Y+A IE     NG   ++F G+GN E             V  LL  + + E  K    
Sbjct: 123 QCYEAEIEEIDEENGTAAITFAGYGNAE-------------VTPLLNLKPVEEGRK---- 182

Query: 190 RKIAQAASVDFQSRNLPSKLRIEPDDPEDVKATKRKKIHAFKSKMRVEQLEVTQNKRQNA 249
                 A  D  ++ +  K  I        +  + KK  A K   R+++LE  +  ++  
Sbjct: 183 ------AKEDSGNKPMSKKEMI-------AQQREYKKKKALKKAQRIKELEQEREDQKVK 230

Query: 250 WQQFQS-AKGKSKKIGFFSGRKRESIFKSPDDPNGKVGVTGSG---KGLTEFQKREKH 299
           WQQF + A  K+KK     G+ + SIF SP+   GKVGV   G   K +T++Q   K+
Sbjct: 243 WQQFNNRAYSKNKK-----GQVKRSIFASPESVTGKVGVGTCGIADKPMTQYQDTSKY 230

[Close]

BLAST of Lsi11G000990 vs. Swiss-Prot
Match: SPF30_HUMAN (Survival of motor neuron-related-splicing factor 30 OS=Homo sapiens GN=SMNDC1 PE=1 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 7.3e-07
Identity = 83/298 (27.85%), Postives = 128/298 (42.95%), Query Frame = 1


Query: 10  EELANNLSTYKDQLQQVRQLLDDDPSNSEYIDMEKELEEKHWTWAKVAVMQVIALTEELL 69
           E+LA  L++YK QLQQV   L  +  N + + ++K+L+E            VI LT++LL
Sbjct: 3   EDLAKQLASYKAQLQQVEAALSGNGENEDLLKLKKDLQE------------VIELTKDLL 62

Query: 70  STAKQNEISGSNVETGDDSASISFQQPKENEMFARTSTSLTLALQHVGTKETHRIFSSR- 129
           ST     ++ S+        S +  QP  +                VG K    ++S   
Sbjct: 63  STQPSETLASSD--------SFASTQPTHS--------------WKVGDK-CMAVWSEDG 122

Query: 130 --YDATIEA-HTVNGFY-VSFDGWGNKEEVDPANVRTIQLEVNALLEAERMAEATKQAIK 189
             Y+A IE     NG   ++F G+GN E             V  LL  + + E  K    
Sbjct: 123 QCYEAEIEEIDEENGTAAITFAGYGNAE-------------VTPLLNLKPVEEGRK---- 182

Query: 190 RKIAQAASVDFQSRNLPSKLRIEPDDPEDVKATKRKKIHAFKSKMRVEQLEVTQNKRQNA 249
                 A  D  ++ +  K  I        +  + KK  A K   R+++LE  +  ++  
Sbjct: 183 ------AKEDSGNKPMSKKEMI-------AQQREYKKKKALKKAQRIKELEQEREDQKVK 230

Query: 250 WQQFQS-AKGKSKKIGFFSGRKRESIFKSPDDPNGKVGVTGSG---KGLTEFQKREKH 299
           WQQF + A  K+KK     G+ + SIF SP+   GKVGV   G   K +T++Q   K+
Sbjct: 243 WQQFNNRAYSKNKK-----GQVKRSIFASPESVTGKVGVGTCGIADKPMTQYQDTSKY 230

[Close]

BLAST of Lsi11G000990 vs. Swiss-Prot
Match: SPF30_BOVIN (Survival of motor neuron-related-splicing factor 30 OS=Bos taurus GN=SMNDC1 PE=2 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 1.2e-06
Identity = 86/298 (28.86%), Postives = 129/298 (43.29%), Query Frame = 1


Query: 10  EELANNLSTYKDQLQQVRQLLDDDPSNSEYIDMEKELEEKHWTWAKVAVMQVIALTEELL 69
           E+LA  L++YK QLQQV   L  +  N + + ++K+L+E            VI LT++LL
Sbjct: 3   EDLAKQLASYKAQLQQVEAALSGNGENEDLLKLKKDLQE------------VIELTKDLL 62

Query: 70  STAKQNEISGSNVETGDDSASISFQQPKENEMFARTSTSLTLALQHVGTKETHRIFSSR- 129
           ST     ++ S     D+ AS    QP  +                VG K    I+S   
Sbjct: 63  STQPSETLASS-----DNFAST---QPTHS--------------WKVGDK-CMAIWSEDG 122

Query: 130 --YDATIEA-HTVNGFY-VSFDGWGNKEEVDPANVRTIQLEVNALLEAERMAEATKQAIK 189
             Y+A IE     NG   ++F G+GN E             V  LL  + + E  K    
Sbjct: 123 QCYEAEIEEIDEENGTAAITFAGYGNAE-------------VTPLLNLKPVEEGRK---- 182

Query: 190 RKIAQAASVDFQSRNLPSKLRIEPDDPEDVKATKRKKIHAFKSKMRVEQLEVTQNKRQNA 249
                 A  D  ++ +  K  I        +  + KK  A K   R+++LE  +  ++  
Sbjct: 183 ------AKEDSGNKPMSKKEMI-------AQQREYKKKKALKKAQRIKELEQEREDQKVK 230

Query: 250 WQQFQS-AKGKSKKIGFFSGRKRESIFKSPDDPNGKVGVTGSG---KGLTEFQKREKH 299
           WQQF + A  K+KK     G+ + SIF SP+   GKVGV   G   K +T++Q   K+
Sbjct: 243 WQQFNNRAYSKNKK-----GQVKRSIFASPESVTGKVGVGTCGIADKPMTQYQDTSKY 230

[Close]

BLAST of Lsi11G000990 vs. TrEMBL
Match: V7C9G0_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_003G075900g PE=4 SV=1)

HSP 1 Score: 395.2 bits (1014), Expect = 7.3e-107
Identity = 226/314 (71.97%), Postives = 254/314 (80.89%), Query Frame = 1


Query: 1   MQGGEDVSIEELANNLSTYKDQLQQVRQLLDDDPSNSEYIDMEKELEEKHWTWAKVAVMQ 60
           MQGG++VSIEELA+NLS YKDQL QVRQLL+D+PSNSEY+DME+EL E            
Sbjct: 1   MQGGDEVSIEELASNLSLYKDQLHQVRQLLNDEPSNSEYVDMERELSE------------ 60

Query: 61  VIALTEELLSTAKQNEISGSNVETGDDSASISFQQPKENEMFARTSTSLTLALQHVGTKE 120
           VIALTEELL+TAKQNEISGS     +   S S    KEN+M   +S+ L   L  +GTK 
Sbjct: 61  VIALTEELLATAKQNEISGSTAAP-NAGTSPSLSIHKENQMLD-SSSDLQEKLP-IGTK- 120

Query: 121 THRIFSSR---YDATIEAHTVNGFYVSFDGWGNKEEVDPANVRTIQL-EVNALLEAERMA 180
              ++S     YDATIEA+T NG+YVS+D WGNKEEVDPAN+R IQ   V+ALLEAER+A
Sbjct: 121 VQGVWSEDGEWYDATIEAYTPNGYYVSYDNWGNKEEVDPANIRPIQEGSVDALLEAERVA 180

Query: 181 EATKQAIKRKIAQAASVDFQSRNLPSKLRIEPDDPEDVKATKRKKIHAFKSKMRVEQLEV 240
           EATKQAIKRKIAQAAS+D QSR+LP+KLRIE DDPEDVKA+KRKKIHAFKSKMR+EQLEV
Sbjct: 181 EATKQAIKRKIAQAASIDLQSRSLPAKLRIEADDPEDVKASKRKKIHAFKSKMRMEQLEV 240

Query: 241 TQNKRQNAWQQFQSAKGKSKKIGFFSGRKRESIFKSPDDPNGKVGVTGSGKGLTEFQKRE 300
           TQNKRQNAWQQFQS KGK+KKIGFFSGRKRESIFKSPDDP+GKVGVTGSGKGLTEFQKRE
Sbjct: 241 TQNKRQNAWQQFQSTKGKAKKIGFFSGRKRESIFKSPDDPHGKVGVTGSGKGLTEFQKRE 298

Query: 301 KHLHLKGATVEMDD 311
           KH HLK  T E DD
Sbjct: 301 KHFHLKDGTTENDD 298

[Close]

BLAST of Lsi11G000990 vs. TrEMBL
Match: A0A067L5J3_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00310 PE=4 SV=1)

HSP 1 Score: 392.9 bits (1008), Expect = 3.6e-106
Identity = 217/313 (69.33%), Postives = 251/313 (80.19%), Query Frame = 1


Query: 1   MQGGEDVSIEELANNLSTYKDQLQQVRQLLDDDPSNSEYIDMEKELEEKHWTWAKVAVMQ 60
           MQGGE+VSIEELA+NLSTYK+QL +VRQ+L DDP NSEY+DMEKEL E            
Sbjct: 1   MQGGEEVSIEELASNLSTYKEQLHKVRQILADDPDNSEYVDMEKELNE------------ 60

Query: 61  VIALTEELLSTAKQNEISGSNVETGDDSASISFQQPKENEMFARTSTSLTLALQHVGTKE 120
           VIALTEELL+TAKQNEISGS++ TG  SAS +  Q ++    A            VGTK 
Sbjct: 61  VIALTEELLATAKQNEISGSDIGTGI-SASPNLPQSQDLTNIANQYEKFP-----VGTK- 120

Query: 121 THRIFSSR---YDATIEAHTVNGFYVSFDGWGNKEEVDPANVRTIQLEVNALLEAERMAE 180
              ++S     YDAT+E+HT+NG+YV++DGWGN+EEVDPANVR +  E NALLEAE++AE
Sbjct: 121 VQAVWSEDGEWYDATVESHTLNGYYVTYDGWGNREEVDPANVRPV--EFNALLEAEKVAE 180

Query: 181 ATKQAIKRKIAQAASVDFQSRNLPSKLRIEPDDPEDVKATKRKKIHAFKSKMRVEQLEVT 240
           ATKQAIKRKIA+AA  D+QSR+LP+KLRI  DDPEDVK+ KRKKIHAFKSKMR EQLEV 
Sbjct: 181 ATKQAIKRKIAEAAHTDYQSRSLPAKLRINTDDPEDVKSAKRKKIHAFKSKMRFEQLEVA 240

Query: 241 QNKRQNAWQQFQSAKGKSKKIGFFSGRKRESIFKSPDDPNGKVGVTGSGKGLTEFQKREK 300
           QNKRQNAWQQFQ++KG +KK+GFFSGRKRESIFKSPDDPNGKVGVTGSGKGLTEFQKREK
Sbjct: 241 QNKRQNAWQQFQTSKGSTKKVGFFSGRKRESIFKSPDDPNGKVGVTGSGKGLTEFQKREK 292

Query: 301 HLHLKGATVEMDD 311
           HLHLKG T+E DD
Sbjct: 301 HLHLKGGTIEADD 292

[Close]

BLAST of Lsi11G000990 vs. TrEMBL
Match: F6HK00_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0035g01830 PE=4 SV=1)

HSP 1 Score: 392.5 bits (1007), Expect = 4.8e-106
Identity = 218/314 (69.43%), Postives = 251/314 (79.94%), Query Frame = 1


Query: 1   MQGGEDVSIEELANNLSTYKDQLQQVRQLLDDDPSNSEYIDMEKELEEKHWTWAKVAVMQ 60
           MQGGE++SI+ELA+NLSTYKDQLQQVR+LL DDP NSEY+DMEKELEE          ++
Sbjct: 1   MQGGEELSIDELASNLSTYKDQLQQVRKLLVDDPGNSEYVDMEKELEEMF-----TLRLE 60

Query: 61  VIALTEELLSTAKQNEISGSNVETGDDSASISFQQPKENE-MFARTSTSLTLALQHVGTK 120
           VI LTEELL+TAKQ+EIS     T  D++ I  Q    +E +    + S       +GTK
Sbjct: 61  VIVLTEELLATAKQSEISLPAFGTNADASPIQHQSGGSSEHLMEPGNNSDHYGKFPIGTK 120

Query: 121 ETHRIFSSR---YDATIEAHTVNGFYVSFDGWGNKEEVDPANVRTIQLEVNALLEAERMA 180
               ++S     Y+ATI++ T +G+YVS+DGWGNKEEVDP NVR IQ EVNALLEAE+ A
Sbjct: 121 -VQAVWSEDGEWYEATIDSLTPDGYYVSYDGWGNKEEVDPGNVRPIQEEVNALLEAEKEA 180

Query: 181 EATKQAIKRKIAQAASVDFQSRNLPSKLRIEPDDPEDVKATKRKKIHAFKSKMRVEQLEV 240
           EATKQAIKRKIAQAA+ DFQSR+LP+KLRIEPDDPEDVK  KRKKIHAFKSKMR EQLEV
Sbjct: 181 EATKQAIKRKIAQAAATDFQSRSLPAKLRIEPDDPEDVKIAKRKKIHAFKSKMRFEQLEV 240

Query: 241 TQNKRQNAWQQFQSAKGKSKKIGFFSGRKRESIFKSPDDPNGKVGVTGSGKGLTEFQKRE 300
           TQNKRQNAWQQFQ+ KG++KKIGFFSGRKRESIFKSPDDPNGKVGVTGSGKGLTEFQKRE
Sbjct: 241 TQNKRQNAWQQFQTTKGRAKKIGFFSGRKRESIFKSPDDPNGKVGVTGSGKGLTEFQKRE 300

Query: 301 KHLHLKGATVEMDD 311
           KHLHLKG + + DD
Sbjct: 301 KHLHLKGGSADTDD 308

[Close]

BLAST of Lsi11G000990 vs. TrEMBL
Match: A0A0L9TTT2_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan01g338800 PE=4 SV=1)

HSP 1 Score: 392.5 bits (1007), Expect = 4.8e-106
Identity = 222/314 (70.70%), Postives = 250/314 (79.62%), Query Frame = 1


Query: 1   MQGGEDVSIEELANNLSTYKDQLQQVRQLLDDDPSNSEYIDMEKELEEKHWTWAKVAVMQ 60
           MQGG++VSIEELA+NLS YKDQL QVRQLL+D+PSNSEY+DME+EL E            
Sbjct: 1   MQGGDEVSIEELASNLSLYKDQLHQVRQLLNDEPSNSEYVDMERELSE------------ 60

Query: 61  VIALTEELLSTAKQNEISGSNVETGDDSASISFQQPKENEMFARTSTSLTLALQHVGTKE 120
           VIALTEELL+TAKQNE+SGS +   +   S S    KEN+M   +          +GTK 
Sbjct: 61  VIALTEELLATAKQNEMSGS-MAAPNAGTSPSLSIHKENQMLDSSDLQEKFL---IGTK- 120

Query: 121 THRIFSSR---YDATIEAHTVNGFYVSFDGWGNKEEVDPANVRTIQL-EVNALLEAERMA 180
              ++S     YDATIEA+T NG+YVS+D WGNKEEVDPAN+R IQ   V+ALLEAER+A
Sbjct: 121 VQAVWSEDGEWYDATIEAYTPNGYYVSYDNWGNKEEVDPANIRPIQEGSVDALLEAERVA 180

Query: 181 EATKQAIKRKIAQAASVDFQSRNLPSKLRIEPDDPEDVKATKRKKIHAFKSKMRVEQLEV 240
           EATKQAIKRKIAQAAS+D QSR+LP+KLRIE DDPEDVKA+KRKKIHAFKSKMR+EQLEV
Sbjct: 181 EATKQAIKRKIAQAASIDLQSRSLPAKLRIEADDPEDVKASKRKKIHAFKSKMRMEQLEV 240

Query: 241 TQNKRQNAWQQFQSAKGKSKKIGFFSGRKRESIFKSPDDPNGKVGVTGSGKGLTEFQKRE 300
           TQNKRQNAWQQFQS KGK+KKIGFFSGRKRESIFKSPDDP GKVGVTGSGKGLTEFQKRE
Sbjct: 241 TQNKRQNAWQQFQSTKGKAKKIGFFSGRKRESIFKSPDDPQGKVGVTGSGKGLTEFQKRE 297

Query: 301 KHLHLKGATVEMDD 311
           KH HLK  T E DD
Sbjct: 301 KHFHLKDGTTENDD 297

[Close]

BLAST of Lsi11G000990 vs. TrEMBL
Match: A0A0S3R9U1_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.01G551500 PE=4 SV=1)

HSP 1 Score: 392.5 bits (1007), Expect = 4.8e-106
Identity = 222/314 (70.70%), Postives = 250/314 (79.62%), Query Frame = 1


Query: 1   MQGGEDVSIEELANNLSTYKDQLQQVRQLLDDDPSNSEYIDMEKELEEKHWTWAKVAVMQ 60
           MQGG++VSIEELA+NLS YKDQL QVRQLL+D+PSNSEY+DME+EL E            
Sbjct: 1   MQGGDEVSIEELASNLSLYKDQLHQVRQLLNDEPSNSEYVDMERELSE------------ 60

Query: 61  VIALTEELLSTAKQNEISGSNVETGDDSASISFQQPKENEMFARTSTSLTLALQHVGTKE 120
           VIALTEELL+TAKQNE+SGS +   +   S S    KEN+M   +          +GTK 
Sbjct: 61  VIALTEELLATAKQNEMSGS-MAAPNAGTSPSLSIHKENQMLDSSDLQEKFL---IGTK- 120

Query: 121 THRIFSSR---YDATIEAHTVNGFYVSFDGWGNKEEVDPANVRTIQL-EVNALLEAERMA 180
              ++S     YDATIEA+T NG+YVS+D WGNKEEVDPAN+R IQ   V+ALLEAER+A
Sbjct: 121 VQAVWSEDGEWYDATIEAYTPNGYYVSYDNWGNKEEVDPANIRPIQEGSVDALLEAERVA 180

Query: 181 EATKQAIKRKIAQAASVDFQSRNLPSKLRIEPDDPEDVKATKRKKIHAFKSKMRVEQLEV 240
           EATKQAIKRKIAQAAS+D QSR+LP+KLRIE DDPEDVKA+KRKKIHAFKSKMR+EQLEV
Sbjct: 181 EATKQAIKRKIAQAASIDLQSRSLPAKLRIEADDPEDVKASKRKKIHAFKSKMRMEQLEV 240

Query: 241 TQNKRQNAWQQFQSAKGKSKKIGFFSGRKRESIFKSPDDPNGKVGVTGSGKGLTEFQKRE 300
           TQNKRQNAWQQFQS KGK+KKIGFFSGRKRESIFKSPDDP GKVGVTGSGKGLTEFQKRE
Sbjct: 241 TQNKRQNAWQQFQSTKGKAKKIGFFSGRKRESIFKSPDDPQGKVGVTGSGKGLTEFQKRE 297

Query: 301 KHLHLKGATVEMDD 311
           KH HLK  T E DD
Sbjct: 301 KHFHLKDGTTENDD 297

[Close]

BLAST of Lsi11G000990 vs. TAIR10
Match: AT2G02570.1 (AT2G02570.1 nucleic acid binding;RNA binding)

HSP 1 Score: 334.3 bits (856), Expect = 7.8e-92
Identity = 188/311 (60.45%), Postives = 231/311 (74.28%), Query Frame = 1


Query: 3   GGEDVSIEELANNLSTYKDQLQQVRQLLDDDPSNSEYIDMEKELEEKHWTWAKVAVMQVI 62
           G E++SIE+LA+++STYK+QL+QVRQLL +DP NSEY DMEKEL+E            VI
Sbjct: 4   GVEELSIEQLASSISTYKEQLEQVRQLLSEDPRNSEYADMEKELKE------------VI 63

Query: 63  ALTEELLSTAKQNEISGSNVETGDDSASISFQQPKENEMFARTSTSLTLALQHVGTKETH 122
           ALTEE+L+TAKQNEIS S+     ++   S       E     +  +      VGTK   
Sbjct: 64  ALTEEVLATAKQNEISLSDAGVSAEATPGSPDLEGAWEKTGLRNDPIHEGKFPVGTK-VQ 123

Query: 123 RIFSSR---YDATIEAHTVNGFYVSFDGWGNKEEVDPANVRTIQLEVNALLEAERMAEAT 182
            +FS     YDATIEAHT NG++V++D WGNKEEVDP NVR I  E NA++EAER+A+AT
Sbjct: 124 AVFSDDGEWYDATIEAHTANGYFVAYDEWGNKEEVDPDNVRPI--EQNAIVEAERLAQAT 183

Query: 183 KQAIKRKIAQAASVDFQSRNLPSKLRIEPDDPEDVKATKRKKIHAFKSKMRVEQLEVTQN 242
           K A+KRKI +AAS D+Q++ LP+KL+I+P+DPEDVK  KRKKIHAFKSK R EQLEV QN
Sbjct: 184 KNALKRKIEKAASSDYQTKTLPAKLKIDPNDPEDVKIAKRKKIHAFKSKARFEQLEVVQN 243

Query: 243 KRQNAWQQFQSAKGKSKKIGFFSGRKRESIFKSPDDPNGKVGVTGSGKGLTEFQKREKHL 302
           K+QN WQQFQ+ K K+KK+GFF+GRK+ESIFKSP+DP GKVGVTGSGKGLT+FQKREKHL
Sbjct: 244 KKQNDWQQFQTTKAKTKKVGFFTGRKKESIFKSPEDPFGKVGVTGSGKGLTDFQKREKHL 299

Query: 303 HLKGATVEMDD 311
           HLK    E  D
Sbjct: 304 HLKSGNAEGTD 299

[Close]

BLAST of Lsi11G000990 vs. NCBI nr
Match: gi|449450113|ref|XP_004142808.1| (PREDICTED: survival of motor neuron-related-splicing factor 30 isoform X1 [Cucumis sativus])

HSP 1 Score: 484.6 bits (1246), Expect = 1.3e-133
Identity = 265/313 (84.66%), Postives = 276/313 (88.18%), Query Frame = 1


Query: 1   MQGGEDVSIEELANNLSTYKDQLQQVRQLLDDDPSNSEYIDMEKELEEKHWTWAKVAVMQ 60
           MQGGEDVSIEELANNLSTYKDQL QVRQLLDDDP NSEYIDMEKELEE            
Sbjct: 1   MQGGEDVSIEELANNLSTYKDQLHQVRQLLDDDPGNSEYIDMEKELEE------------ 60

Query: 61  VIALTEELLSTAKQNEISGSNVETGDDSASISFQQPKENEMFARTSTSLTLALQHVGTKE 120
           VIALTEELLSTAKQNE+SGSNVETGDDSASI FQQ KENEM A + +        +GTK 
Sbjct: 61  VIALTEELLSTAKQNEVSGSNVETGDDSASIGFQQSKENEMEAGSMSDYHEKFP-IGTK- 120

Query: 121 THRIFSSR---YDATIEAHTVNGFYVSFDGWGNKEEVDPANVRTIQLEVNALLEAERMAE 180
              ++S     YDATIEAHTVNGFYVS+DGWGNKEEVDPANVRTIQLEVN LLEAER+AE
Sbjct: 121 VQAVWSEDGEWYDATIEAHTVNGFYVSYDGWGNKEEVDPANVRTIQLEVNPLLEAERVAE 180

Query: 181 ATKQAIKRKIAQAASVDFQSRNLPSKLRIEPDDPEDVKATKRKKIHAFKSKMRVEQLEVT 240
           ATKQAIKRKIAQAASVDFQSRNLPSKLRIEPDDPEDVKATKRKKIHAFKSKMR+EQLEVT
Sbjct: 181 ATKQAIKRKIAQAASVDFQSRNLPSKLRIEPDDPEDVKATKRKKIHAFKSKMRIEQLEVT 240

Query: 241 QNKRQNAWQQFQSAKGKSKKIGFFSGRKRESIFKSPDDPNGKVGVTGSGKGLTEFQKREK 300
           QNKRQNAWQQFQ+AKGKSKKIGFFSGRKRESIFKSPDDPNGKVGVTGSGKGLTEFQKREK
Sbjct: 241 QNKRQNAWQQFQTAKGKSKKIGFFSGRKRESIFKSPDDPNGKVGVTGSGKGLTEFQKREK 299

Query: 301 HLHLKGATVEMDD 311
           HLHLKGATVEMD+
Sbjct: 301 HLHLKGATVEMDE 299

[Close]

BLAST of Lsi11G000990 vs. NCBI nr
Match: gi|659121301|ref|XP_008460591.1| (PREDICTED: survival of motor neuron-related-splicing factor 30 isoform X1 [Cucumis melo])

HSP 1 Score: 441.4 bits (1134), Expect = 1.3e-120
Identity = 235/265 (88.68%), Postives = 244/265 (92.08%), Query Frame = 1


Query: 49  KHWTWAKVAVMQVIALTEELLSTAKQNEISGSNVETGDDSASISFQQPKENEMFARTSTS 108
           KHWTWAKVAVMQVIALTEELLSTAKQNE+SGSNVETGDDSASI FQQPKENEM A + + 
Sbjct: 12  KHWTWAKVAVMQVIALTEELLSTAKQNEVSGSNVETGDDSASIGFQQPKENEMEAGSMSD 71

Query: 109 LTLALQHVGTKETHRIFSSR---YDATIEAHTVNGFYVSFDGWGNKEEVDPANVRTIQLE 168
                  +GTK    ++S     YDATIEAHTVNGFYVS+DGWGNKEEVDPANVRTIQLE
Sbjct: 72  YHEKFP-IGTK-VQAVWSEDGEWYDATIEAHTVNGFYVSYDGWGNKEEVDPANVRTIQLE 131

Query: 169 VNALLEAERMAEATKQAIKRKIAQAASVDFQSRNLPSKLRIEPDDPEDVKATKRKKIHAF 228
           VNALLEAERMAEATKQAIKRKIAQAASVDFQSRNLPSKLRIEPDDPEDVKATKRKKIHAF
Sbjct: 132 VNALLEAERMAEATKQAIKRKIAQAASVDFQSRNLPSKLRIEPDDPEDVKATKRKKIHAF 191

Query: 229 KSKMRVEQLEVTQNKRQNAWQQFQSAKGKSKKIGFFSGRKRESIFKSPDDPNGKVGVTGS 288
           KSKMR+EQLEVTQNKRQNAWQQFQSAKGKSKKIGFFSGRKRESIFKSPDDPNGKVGVTGS
Sbjct: 192 KSKMRIEQLEVTQNKRQNAWQQFQSAKGKSKKIGFFSGRKRESIFKSPDDPNGKVGVTGS 251

Query: 289 GKGLTEFQKREKHLHLKGATVEMDD 311
           GKGLTEFQKREKHLHLKGATVEMD+
Sbjct: 252 GKGLTEFQKREKHLHLKGATVEMDE 274

[Close]

BLAST of Lsi11G000990 vs. NCBI nr
Match: gi|659121305|ref|XP_008460593.1| (PREDICTED: survival of motor neuron-related-splicing factor 30 isoform X2 [Cucumis melo])

HSP 1 Score: 415.2 bits (1066), Expect = 9.8e-113
Identity = 224/259 (86.49%), Postives = 235/259 (90.73%), Query Frame = 1


Query: 55  KVAVMQVIALTEELLSTAKQNEISGSNVETGDDSASISFQQPKENEMFARTSTSLTLALQ 114
           K  + +VIALTEELLSTAKQNE+SGSNVETGDDSASI FQQPKENEM A + +       
Sbjct: 13  KKELEEVIALTEELLSTAKQNEVSGSNVETGDDSASIGFQQPKENEMEAGSMSDYHEKFP 72

Query: 115 HVGTKETHRIFSSR---YDATIEAHTVNGFYVSFDGWGNKEEVDPANVRTIQLEVNALLE 174
            +GTK    ++S     YDATIEAHTVNGFYVS+DGWGNKEEVDPANVRTIQLEVNALLE
Sbjct: 73  -IGTK-VQAVWSEDGEWYDATIEAHTVNGFYVSYDGWGNKEEVDPANVRTIQLEVNALLE 132

Query: 175 AERMAEATKQAIKRKIAQAASVDFQSRNLPSKLRIEPDDPEDVKATKRKKIHAFKSKMRV 234
           AERMAEATKQAIKRKIAQAASVDFQSRNLPSKLRIEPDDPEDVKATKRKKIHAFKSKMR+
Sbjct: 133 AERMAEATKQAIKRKIAQAASVDFQSRNLPSKLRIEPDDPEDVKATKRKKIHAFKSKMRI 192

Query: 235 EQLEVTQNKRQNAWQQFQSAKGKSKKIGFFSGRKRESIFKSPDDPNGKVGVTGSGKGLTE 294
           EQLEVTQNKRQNAWQQFQSAKGKSKKIGFFSGRKRESIFKSPDDPNGKVGVTGSGKGLTE
Sbjct: 193 EQLEVTQNKRQNAWQQFQSAKGKSKKIGFFSGRKRESIFKSPDDPNGKVGVTGSGKGLTE 252

Query: 295 FQKREKHLHLKGATVEMDD 311
           FQKREKHLHLKGATVEMD+
Sbjct: 253 FQKREKHLHLKGATVEMDE 269

[Close]

BLAST of Lsi11G000990 vs. NCBI nr
Match: gi|449450115|ref|XP_004142809.1| (PREDICTED: survival of motor neuron-related-splicing factor 30 isoform X2 [Cucumis sativus])

HSP 1 Score: 410.2 bits (1053), Expect = 3.2e-111
Identity = 221/255 (86.67%), Postives = 232/255 (90.98%), Query Frame = 1


Query: 59  MQVIALTEELLSTAKQNEISGSNVETGDDSASISFQQPKENEMFARTSTSLTLALQHVGT 118
           MQVIALTEELLSTAKQNE+SGSNVETGDDSASI FQQ KENEM A + +        +GT
Sbjct: 1   MQVIALTEELLSTAKQNEVSGSNVETGDDSASIGFQQSKENEMEAGSMSDYHEKFP-IGT 60

Query: 119 KETHRIFSSR---YDATIEAHTVNGFYVSFDGWGNKEEVDPANVRTIQLEVNALLEAERM 178
           K    ++S     YDATIEAHTVNGFYVS+DGWGNKEEVDPANVRTIQLEVN LLEAER+
Sbjct: 61  K-VQAVWSEDGEWYDATIEAHTVNGFYVSYDGWGNKEEVDPANVRTIQLEVNPLLEAERV 120

Query: 179 AEATKQAIKRKIAQAASVDFQSRNLPSKLRIEPDDPEDVKATKRKKIHAFKSKMRVEQLE 238
           AEATKQAIKRKIAQAASVDFQSRNLPSKLRIEPDDPEDVKATKRKKIHAFKSKMR+EQLE
Sbjct: 121 AEATKQAIKRKIAQAASVDFQSRNLPSKLRIEPDDPEDVKATKRKKIHAFKSKMRIEQLE 180

Query: 239 VTQNKRQNAWQQFQSAKGKSKKIGFFSGRKRESIFKSPDDPNGKVGVTGSGKGLTEFQKR 298
           VTQNKRQNAWQQFQ+AKGKSKKIGFFSGRKRESIFKSPDDPNGKVGVTGSGKGLTEFQKR
Sbjct: 181 VTQNKRQNAWQQFQTAKGKSKKIGFFSGRKRESIFKSPDDPNGKVGVTGSGKGLTEFQKR 240

Query: 299 EKHLHLKGATVEMDD 311
           EKHLHLKGATVEMD+
Sbjct: 241 EKHLHLKGATVEMDE 253

[Close]

BLAST of Lsi11G000990 vs. NCBI nr
Match: gi|502126585|ref|XP_004499363.1| (PREDICTED: survival of motor neuron-related-splicing factor 30 [Cicer arietinum])

HSP 1 Score: 396.7 bits (1018), Expect = 3.6e-107
Identity = 226/319 (70.85%), Postives = 254/319 (79.62%), Query Frame = 1


Query: 1   MQGGEDVSIEELANNLSTYKDQLQQVRQLLDDDPSNSEYIDMEKELEEKHWTWAKVAVMQ 60
           MQGG++V+IEELA+NLS YKDQLQQVRQLL+D+PSNSEY+DME+EL             +
Sbjct: 1   MQGGDEVNIEELASNLSIYKDQLQQVRQLLNDEPSNSEYVDMEREL------------CE 60

Query: 61  VIALTEELLSTAKQNEISGSNVETGDDSASISFQQPKENEMFARTSTSLTLALQH----- 120
           VIALTEELL+TAKQNE+SG+       SAS    +PKEN      +  L     H     
Sbjct: 61  VIALTEELLATAKQNEVSGA-------SASPGLSRPKEN------NEELDGPYDHQEKFP 120

Query: 121 VGTKETHRIFSSR---YDATIEAHTVNGFYVSFDGWGNKEEVDPANVRTIQL-EVNALLE 180
           VGTK    ++S     YDATIEA+T NG+YVS++ WGNKEEVDPANVR IQ   V+AL+E
Sbjct: 121 VGTK-VQAVWSDDGEWYDATIEAYTPNGYYVSYESWGNKEEVDPANVRPIQEGTVDALVE 180

Query: 181 AERMAEATKQAIKRKIAQAASVDFQSRNLPSKLRIEPDDPEDVKATKRKKIHAFKSKMRV 240
           AER+AEATKQAIKRKIAQAASVDFQSR LP+KLRIEPDDPEDVKATKRKKIHAFKSKMR+
Sbjct: 181 AERVAEATKQAIKRKIAQAASVDFQSRTLPAKLRIEPDDPEDVKATKRKKIHAFKSKMRM 240

Query: 241 EQLEVTQNKRQNAWQQFQSAKGKSKKIGFFSGRKRESIFKSPDDPNGKVGVTGSGKGLTE 300
           EQLEVTQNKRQNAWQQFQS KGK+KKIGFFSGRKRESIFKSPDDP GKVGVTGSGKGLTE
Sbjct: 241 EQLEVTQNKRQNAWQQFQSTKGKTKKIGFFSGRKRESIFKSPDDPQGKVGVTGSGKGLTE 293

Query: 301 FQKREKHLHLKGATVEMDD 311
           FQKREKH HLK  ++E DD
Sbjct: 301 FQKREKHFHLKDGSIEGDD 293

The following BLAST results are available for this feature:

BLAST of Lsi11G000990 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SPF30_DANRE	2.5e-07	26.33	Survival of motor neuron-related-splicing factor 30 OS=Danio rerio GN=smndc1 PE=...	[more]
SPF30_XENTR	2.5e-07	28.04	Survival of motor neuron-related-splicing factor 30 OS=Xenopus tropicalis GN=smn...	[more]
SPF30_PONAB	5.6e-07	28.19	Survival of motor neuron-related-splicing factor 30 OS=Pongo abelii GN=SMNDC1 PE...	[more]
SPF30_HUMAN	7.3e-07	27.85	Survival of motor neuron-related-splicing factor 30 OS=Homo sapiens GN=SMNDC1 PE...	[more]
SPF30_BOVIN	1.2e-06	28.86	Survival of motor neuron-related-splicing factor 30 OS=Bos taurus GN=SMNDC1 PE=2...	[more]

BLAST of Lsi11G000990 vs. TrEMBL


Match Name	E-value	Identity	Description
V7C9G0_PHAVU	7.3e-107	71.97	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_003G075900g PE=4 SV=1	[more]
A0A067L5J3_JATCU	3.6e-106	69.33	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00310 PE=4 SV=1	[more]
F6HK00_VITVI	4.8e-106	69.43	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0035g01830 PE=4 SV=...	[more]
A0A0L9TTT2_PHAAN	4.8e-106	70.70	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan01g338800 PE=4 SV=1	[more]
A0A0S3R9U1_PHAAN	4.8e-106	70.70	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.01G551500 PE=...	[more]

BLAST of Lsi11G000990 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G02570.1	7.8e-92	60.45	nucleic acid binding;RNA binding	[more]

BLAST of Lsi11G000990 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449450113\|ref\|XP_004142808.1\|	1.3e-133	84.66	PREDICTED: survival of motor neuron-related-splicing factor 30 isoform X1 [Cucum...	[more]
gi\|659121301\|ref\|XP_008460591.1\|	1.3e-120	88.68	PREDICTED: survival of motor neuron-related-splicing factor 30 isoform X1 [Cucum...	[more]
gi\|659121305\|ref\|XP_008460593.1\|	9.8e-113	86.49	PREDICTED: survival of motor neuron-related-splicing factor 30 isoform X2 [Cucum...	[more]
gi\|449450115\|ref\|XP_004142809.1\|	3.2e-111	86.67	PREDICTED: survival of motor neuron-related-splicing factor 30 isoform X2 [Cucum...	[more]
gi\|502126585\|ref\|XP_004499363.1\|	3.6e-107	70.85	PREDICTED: survival of motor neuron-related-splicing factor 30 [Cicer arietinum]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006397	mRNA processing
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003723	RNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi11G000990.1	Lsi11G000990.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 9..29 score: -coord: 169..189 scor
None	No IPR available	GENE3D	G3DSA:2.30.30.140		coord: 129..163 score: 8.

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi11G000990	Csa5G526860	Cucumber (Chinese Long) v2	culsiB337
Lsi11G000990	CSPI05G18530	Wild cucumber (PI 183967)	cpilsiB339
Lsi11G000990	Cucsa.011580	Cucumber (Gy14) v1	cgylsiB317
Lsi11G000990	CmaCh04G018970	Cucurbita maxima (Rimu)	cmalsiB635
Lsi11G000990	CmoCh04G020000	Cucurbita moschata (Rifu)	cmolsiB623
Lsi11G000990	Cla001905	Watermelon (97103) v1	lsiwmB118
Lsi11G000990	MELO3C022928	Melon (DHL92) v3.5.1	lsimeB082
Lsi11G000990	ClCG11G000310	Watermelon (Charleston Gray)	lsiwcgB080
Lsi11G000990	Cla97C11G206650	Watermelon (97103) v2	lsiwmbB076
Lsi11G000990	BhiUN159G28	Wax gourd	lsiwgoB125
Lsi11G000990	Cp4.1LG01g17210	Cucurbita pepo (Zucchini)	cpelsiB321
Lsi11G000990	CsGy5G018180	Cucumber (Gy14) v2	cgyblsiB308
Lsi11G000990	Carg26175	Silver-seed gourd	carlsiB255
Lsi11G000990	CsaV3_5G027420	Cucumber (Chinese Long) v3	cuclsiB361

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi11G000990	Cucumber (Gy14) v1	cgylsiB305
Lsi11G000990	Cucurbita pepo (Zucchini)	cpelsiB319
Lsi11G000990	Wild cucumber (PI 183967)	cpilsiB340
Lsi11G000990	Cucumber (Chinese Long) v2	culsiB338
Lsi11G000990	Watermelon (Charleston Gray)	lsiwcgB084
Lsi11G000990	Watermelon (97103) v1	lsiwmB114
Lsi11G000990	Watermelon (97103) v1	lsiwmB109
Lsi11G000990	Cucumber (Gy14) v2	cgyblsiB309
Lsi11G000990	Melon (DHL92) v3.6.1	lsimedB087
Lsi11G000990	Cucumber (Chinese Long) v3	cuclsiB362
Lsi11G000990	Watermelon (97103) v2	lsiwmbB079
Lsi11G000990	Wax gourd	lsiwgoB133
Lsi11G000990	Wax gourd	lsiwgoB134