CmoCh04G020000 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh04G020000
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionSurvival of motor neuron-related-splicing factor 30
LocationCmo_Chr04 : 10590917 .. 10596454 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAGGTTATCGCCTTGACGGAAGAGCTTCTTTCAACAGCAAAGCAAAATGAGATTTCTGGATCAAATGTAGAAACTGGTGATGACAGTGCATCAATTAGTTTCCAGCAGACTAAAGGAAATAAGATGGTAAGTTCACATTTGTTCTTGTTTTGAGCATTACATCTCTGCTGGAAGCAACATTATATAATAAATGGTTATGGCTTTAGATTTAATGTGCACTGCTTGGATCTCTGTATTGTTTATTGTATATGTTGGTATTGTTTCTTTGCCTTATTTGGAAGCATCCCTCCTAAATGGTTACTGACATGTAGTTTTATTGTTATGTGCTTTAATGATTCATATTTTTGGCCTAGGATTCTCTGTGTGCTTCTGCTTGGAAGCGATTTATTTATGGTTTCAACCATTGTTAACAATTAGAGGCTTTTTCGTATTTGAACTTGTTTGTGGGATTTATAAAGGAAACTTGTTTGTTTCGCTTAATTTATAGGTTATGTGATTTTTGGAGAAATTAATTATTAGGTTTTAAATAACCCAAGGATAGACAAATATGATGCAATACAAATAGAAAGCATTGAAACTGATTAGGAAAGGAAAATATTAACTATTAATAAATAAAAAAAAAAAGACTAATATCTAATTTGAAAAATAGTAGCCTATATAAATGATACAAATCTATACTTCTCAAGTTGGGCGGAATACTGAATACAAGCCAAGCCTGAAAATAAATTCATCAAAATAATTTAACTTGTCCATGGTAATGATTTGGTTGCGGTGTCAACAATTTGATGGTAAGATGGAGCATATTTTAGTTTTGCTATACTATTATTTACCTTTTTAGACTTGAAGTAGTGATCTATCTATAGGTATTGACCTTCTAAGGGGTTCTCTTGTTCACACTTTCATTTGCTTTGTTTCCCTTCTATTCAGGGAGCCTCTGTCTTTTTCCTTTCTTTGGAAGATTAAAATTCCTGAGAAAGTGATTTTTTTGCTTGTACAATCTAGCATGAGAGAGAGATAGACCATCCATGATTATACTCGACATTCCTCCTTTGTGTTTGCGGCCACAATAGTTTGTTATTTGCAAATGTCATATGGAGAATCTAGATCATTTCTTGTGGGGTTGTCATGATTTTGAAACCAAAAATTTACTAGAATTGGGGTAGGTGCTCACTCTCCTTGGATTTGATGCTATAGTTAGTTTGGGATTGTTGCTCTTTGATTAGGAGATTCTAATGAACTCTCCCTTTCATGATTAGGGAAGAGTTTTATGGTGGACATGTTTCACAATTTTGTGGGAGATTGGCTTAGGAGGAGAAACAGCAGGATCTCTAGAAGGGTTGAGAGGTATCAAGGGGAGAGGTGGGAGGTTGTGAGGTTTAATACCTCTTTATGGGCTTCCATGAATTTGTTATCTTTTTGTTATTATCAATTAGGTCTTACTCTTTCAGATTATAATCTGTTCTTGTAGGTTGTGGTGGATTCCTTTTGAGGCTTGGTATTTTTGTATGCCCTTGTACGTTCTTTCATTTTTCTCAATTAAAGCACGATCTCTTATTAAGGAGATCTCGTTGTCACTCAATATTTCGATTTCCTAACCCACCATTGGCAATAATTAGATATGTATGAGACTTATGCATGAAAATGTGTTGAAATCTTATCTTTGTATCAGAAGATAATTGAACAAAAGAGACCTTGAAGTTTTTTCCTCGTCTTAACAAGGAGTCAAACGATGTTAGAGGAATAATAATGGGTGCGGAACCCCTTCATTCTATCCAGGAAATTGTTGCTGCCACGCAAAGTGAGGAGTGCAGAAAATGACTGATTTCTGGCAAGCAACAGTTTTGTTGCTGTCATACATTTAATTCGCACTTTACAATCCCCAAATTCATATGTCAAATATTACTAATAATTTTTTTCTACTTCCTTTTCTTCTAGCAAGCAACTTCATCTATTGATCTCCCTTTTCTCTACCCCCTCCCTCATCATCATCTTCTTCTCTTTTCTTCCCAAGAGAGAGTAGGAATCTCTTCTTCTTGGCCACCATTTTTTTTCCCTCCAAAAACACCATCTTCATCTTTTTCTTATCTTCCTCCTCGTCATGTTACATGAAGAAAACACCTCATTTGGTTCCACCATTTTTCACTTTTGGCTTTCACCATTTTCACTCCACCATACTCACCTTCAAATAGCCTCCACTTGACAATCTCTTTCCCTCAAGCAGCAACCAAAATTAAGTTGTTCTATTCTTCTCGGTTTGCCACACATAAGCTATGGAAGGAAGTCAACACTCTTATTTTTAAGACATACTGCAAAAAACAATTTGAATGGTTTGATATGGAAGCAGTACCACTCAAGAGACGTCATAAATTGCTTGGCAGTTGAATCAACCTTCCGTTGAATTGTATTTCAATATTGTATTCCATCCATGTACATAATATTTACATGGAAGTATGCGTTGAGATGTTTGGTGTTCTAATATTCTCTGTTTTTTGTATGCAGGAAGCTGAAAGCATGTCTGACTATCACGAAAAATTTCCTATTGGAACAAAAGTTCAAGCTGTTTGGAGCGAGGATGGGGAGTGGTGAGTAAAAAAAAGAAAAAAGGAGAAAATTTACAAACTTAAACAAATTCTGTTTCTCTAGGTAGTACACTGTGTCATTGAATTCCAAAACAGAAAGTTTATTTGCCAACTTATTCCCTTTTGAGTTGGAAAAGAGACATTGTTGAAGAAAAGGGATATGTGCTTGAAAGGTTACAAATTACTTGAACACGTACTAGAGAATATTGAAAGTACTCTTTATTCACTGTTTCAAATTGACTGCCCCAGGAAATGTCAAAATAGTAAGGGTCGGTCTTCATTTGTGGGCATGGAGGATAATTTTTTCTTGAAGATTTAGACTCTATCCAATTTAATGAACTTCTACATTTCCAATTTTTTATTTTTTTTTTTTTTACAAAATGGTTGTTAATGAAAACCAGGCTCTTGTGCTATTTTTCATCATGTCATTCAGTGAAGAGGGTTGGTCCCTAGTCAGGTTTAAAGCGTCTCTTTGGGCTTCAATTGCTAAAGAGTTTCATAATCCTTCACTAGGTCATATTTTTTATTTAAGAGCCCTTTTCTGTATAGCTTGTTGTTGAGGCTCCCATTTTCAGGCTATCATTTTGTCCGCCCGTTTTCTTTCATGTTTCTCAGTGTAGGTATTTTTTCTTGTTAAAAGAAATTCTGTTCAGCTATTTTGATTTGAGCCTTCGAAGTAACATTTCACTTGGTCTCTGGTCAAAAGGAGTGATAAGTCTATGAGAATAATTAGTCCGTTGAAGCTGATTTTACTTTCTAGATCTCTAGGCATATTCTAATTTTGTTGCTGGACGCATCTAAACTTCTCACAACCTCATTGTTCTTTGCCTCCTTTTCCGTTGACTGTTGTTTTTAATAGAAACAAAAAATTTCCCTTGACTGTGTTCAATTGTATAAATATTCAGGTACGATGCTACAATTGAAGCCCATACTGTAAATGGTTTCTATGTTAGTTATGATGGTTGGGGAAACAAAGAAGAGGTAAGGTTTCTACTGCTGCAGTTTGCATGACTTTGATTATTTCTAAAGAGTATTATAGTACTTCTTCAGAAAGATCTGGGTCTGATTTTCTTTAAATTAACTAGAACTGTGAAGAATTGGATCATGGTGAGTAAATACGGGAAATTTCCCTTTGGGTGGGTCTAATTTGTGGGACTAAAAACATTTGTAAGAATTCTTGGAAGGCCATCTTCGTTTTAGTTCCTTTGTTTGTTGGATTAGTTGGTATAAATGCCAAGGTTTCCTCTTTGTAAGACTTGATTGAACATATAAAATTCTAGCATTTTGGATTACACCAGGCTGTCCAGAAAACTGGAAGGTATCTTGAACTCATTCTCTCTAAGCCCATTTGTTATGTATATATTGGCTTTGATTACCACCAAGCCCCTAAAGAATTGTTTCCTTTTAAATGTAAAAATGCACGTTATTGAGAGATAATGGGAAGAGACTACTGCTAGTACAAGGAGAGTCAGCATGAGGGAGAACTCAATGAAGTTTAGGAGTTCGAATCATAGAACCTGTTAAATGGAATTGTTCACCTTTTACCTAAGTAGACAGTAAAAACATCTGCACCCATTGTCAACACTTACGATATCTACTAATTGTAGGTGGACCCTGCTAATGTAAGAACAATCCAACTGGAAGTTAATGCTTTGCTTGAAGCAGAAAGAATGGCTGAAGCTACAAAACAGGCTATCAAGCGCAAGATTGCTCAAGCTGCTTCTGTTGACTTCCAATCACGAAATTTACCATCAAGGCTTCGAATTGAACCTGATGATCCTGAGGATGTAGTAAGTGGTTGATAATCTTAATATTTCATGACAACTAATTTACTAAGCTAGTAATTAAGACAAATTTAGTACTGCATTTGTTTGTACCTGTGGTGCTTGAAGTTCATTTTTATTTTTATTATCAGAGTACAACCCCCCGCCCAAAACTTGCTCTGATGTAGTACTTTTTCTTGTATAGAAAGCCACCAAACGCAAGAAAATACATGCTTTCAAGTCAAAGATGCGCATAGAACAGCTTGAAGTTACCCAGAATAAACGGCAGAATGCTTGGCAGCAGTTTCAGTCAGCAAAAGGCAAGTCGAAGAAGGTAAGTTTTGTGAATTTTAGAATTTTGGGGAACATTCATGCGTTTTAGACCGAGGCCCAACAGGTATGAGGTAAAACCCCAAGGCCAAAGGAATAAGTATTTCAATTAGCATTAATCAAAACAGAATCATAATTGTAAGAAGGTTTCAAGAGGGGATGCCAGGTTGTATTTGTATCTGAGTATCTTCCCAATCCTTAAAATAACTTCCCTTGTTATCACATTTTCCCCTTTTAGCACCTTTGTGGCTGTCCAATGATAATTTATACATGCACATTCTCAGATTGGCTTCTTCTCTGGGCGCAAGAAGGAGAGCATTTTCAAGTCTCCTGATGATCCAAATGGCAAGGTTGGTGTGACTGGAAGTGGCAAGGGTTTGACTGAGTTTCAGAAGAGGGAAAAACACTTGCATCTCAAGGGTGCATCGGTGGAGATGGATGATTAAGGGCAGGTCAGATTTTGTAGGTTGCTGCTTTCTTTGTATGTATCTTCATTTAGTATCCATTTGGGGCCATCTGTCTGGTTAGATTCATATAAATGGTTATACCTGTACTAAAAGCTTAGGTTGGGGGATGATTCCCTCTGGGTAACATAGTTTTCTTATAAGAATGGTTACGAAGCCTAGCCATGACAGGATCTCTTTTCTTCGACGTTTTATTTTACGTTCTGTTTCCTTATTATGTGAAAACCCCAGCAATTGTGTTCAAATTTCCTCTCCCGCTAATCACCCCTTCATTAGCAATGAAGAGTGAGTTCTATCCTAAGATGTTTAAGGGAGCTTAATTTATAACATACCATTTGCTTATGTGGAGGGAAGAATTTCAATATTCAATCATTTTAGTTCCATCCATTTGAAATGCAT

mRNA sequence

ATGCAGGTTATCGCCTTGACGGAAGAGCTTCTTTCAACAGCAAAGCAAAATGAGATTTCTGGATCAAATGTAGAAACTGGTGATGACAGTGCATCAATTAGTTTCCAGCAGACTAAAGGAAATAAGATGGAAGCTGAAAGCATGTCTGACTATCACGAAAAATTTCCTATTGGAACAAAAGTTCAAGCTGTTTGGAGCGAGGATGGGGAGTGGTACGATGCTACAATTGAAGCCCATACTGTAAATGGTTTCTATGTTAGTTATGATGGTTGGGGAAACAAAGAAGAGGTGGACCCTGCTAATGTAAGAACAATCCAACTGGAAGTTAATGCTTTGCTTGAAGCAGAAAGAATGGCTGAAGCTACAAAACAGGCTATCAAGCGCAAGATTGCTCAAGCTGCTTCTGTTGACTTCCAATCACGAAATTTACCATCAAGGCTTCGAATTGAACCTGATGATCCTGAGGATGTAAAAGCCACCAAACGCAAGAAAATACATGCTTTCAAGTCAAAGATGCGCATAGAACAGCTTGAAGTTACCCAGAATAAACGGCAGAATGCTTGGCAGCAGTTTCAGTCAGCAAAAGGCAAGTCGAAGAAGATTGGCTTCTTCTCTGGGCGCAAGAAGGAGAGCATTTTCAAGTCTCCTGATGATCCAAATGGCAAGGTTGGTGTGACTGGAAGTGGCAAGGGTTTGACTGAGTTTCAGAAGAGGGAAAAACACTTGCATCTCAAGGGTGCATCGGTGGAGATGGATGATTAAGGGCAGGTCAGATTTTGTAGGTTGCTGCTTTCTTTGTATGTATCTTCATTTAGTATCCATTTGGGGCCATCTGTCTGGTTAGATTCATATAAATGGTTATACCTGTACTAAAAGCTTAGGTTGGGGGATGATTCCCTCTGGGTAACATAGTTTTCTTATAAGAATGGTTACGAAGCCTAGCCATGACAGGATCTCTTTTCTTCGACGTTTTATTTTACGTTCTGTTTCCTTATTATGTGAAAACCCCAGCAATTGTGTTCAAATTTCCTCTCCCGCTAATCACCCCTTCATTAGCAATGAAGAGTGAGTTCTATCCTAAGATGTTTAAGGGAGCTTAATTTATAACATACCATTTGCTTATGTGGAGGGAAGAATTTCAATATTCAATCATTTTAGTTCCATCCATTTGAAATGCAT

Coding sequence (CDS)

ATGCAGGTTATCGCCTTGACGGAAGAGCTTCTTTCAACAGCAAAGCAAAATGAGATTTCTGGATCAAATGTAGAAACTGGTGATGACAGTGCATCAATTAGTTTCCAGCAGACTAAAGGAAATAAGATGGAAGCTGAAAGCATGTCTGACTATCACGAAAAATTTCCTATTGGAACAAAAGTTCAAGCTGTTTGGAGCGAGGATGGGGAGTGGTACGATGCTACAATTGAAGCCCATACTGTAAATGGTTTCTATGTTAGTTATGATGGTTGGGGAAACAAAGAAGAGGTGGACCCTGCTAATGTAAGAACAATCCAACTGGAAGTTAATGCTTTGCTTGAAGCAGAAAGAATGGCTGAAGCTACAAAACAGGCTATCAAGCGCAAGATTGCTCAAGCTGCTTCTGTTGACTTCCAATCACGAAATTTACCATCAAGGCTTCGAATTGAACCTGATGATCCTGAGGATGTAAAAGCCACCAAACGCAAGAAAATACATGCTTTCAAGTCAAAGATGCGCATAGAACAGCTTGAAGTTACCCAGAATAAACGGCAGAATGCTTGGCAGCAGTTTCAGTCAGCAAAAGGCAAGTCGAAGAAGATTGGCTTCTTCTCTGGGCGCAAGAAGGAGAGCATTTTCAAGTCTCCTGATGATCCAAATGGCAAGGTTGGTGTGACTGGAAGTGGCAAGGGTTTGACTGAGTTTCAGAAGAGGGAAAAACACTTGCATCTCAAGGGTGCATCGGTGGAGATGGATGATTAA
Homology
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BLAST of CmoCh04G020000 vs. Swiss-Prot
Match: SPF30_XENTR (Survival of motor neuron-related-splicing factor 30 OS=Xenopus tropicalis GN=smndc1 PE=2 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 3.4e-10
Identity = 73/247 (29.55%), Postives = 110/247 (44.53%), Query Frame = 1 

Query: 2   QVIALTEELLSTAKQNEISGSNVETGDDSASISFQQTKGNKMEAESMSDYHEKFPIGTKV 61
           +VI LT++LLS+           ET DD+               +  +   + + +G K 
Sbjct: 41  EVIELTKDLLSSQPS--------ETADDACD-------------DMSASGSQSWKVGEKC 100

Query: 62  QAVWSEDGEWYDATI-EAHTVNG-FYVSYDGWGNKEEVDPANVRTIQLEVNALLEAERMA 121
            AVWS+DG+WY+A I E    NG   +++ G+GN E     N+R ++       E  +  
Sbjct: 101 MAVWSDDGQWYEAEIEEIDEENGTAAITFAGYGNAEVTSLLNLRPVE-------EGRKAK 160

Query: 122 EATKQAIKRKIAQAASVDFQSRNLPSRLRIEPDDPEDVKATKR-KKIHAFKSKMRIEQLE 181
           E                   S NLP   +      E + A +  KK  A K   RI++LE
Sbjct: 161 E------------------DSGNLPMSKK------EMIAAQREYKKKKALKKAQRIKELE 220

Query: 182 VTQNKRQNAWQQFQS-AKGKSKKIGFFSGRKKESIFKSPDDPNGKVGVTGSG---KGLTE 241
             +  ++  WQQF + A  K+KK     G+ K SIF SP+   GKVGV   G   K +T+
Sbjct: 221 QEREDQKVKWQQFNNKAYSKNKK-----GQVKRSIFASPESVTGKVGVGTCGIADKPMTQ 230

[Close]
BLAST of CmoCh04G020000 vs. Swiss-Prot
Match: SPF30_HUMAN (Survival of motor neuron-related-splicing factor 30 OS=Homo sapiens GN=SMNDC1 PE=1 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 2.4e-08
Identity = 69/246 (28.05%), Postives = 109/246 (44.31%), Query Frame = 1 

Query: 2   QVIALTEELLSTAKQNEISGSNVETGDDSASISFQQTKGNKMEAESMSDYHEKFPIGTKV 61
           +VI LT++LLST     ++ S+          SF  T+               + +G K 
Sbjct: 41  EVIELTKDLLSTQPSETLASSD----------SFASTQPT-----------HSWKVGDKC 100

Query: 62  QAVWSEDGEWYDATIEA-HTVNGFY-VSYDGWGNKEEVDPANVRTIQLEVNALLEAERMA 121
            AVWSEDG+ Y+A IE     NG   +++ G+GN E     N++ ++    A  ++    
Sbjct: 101 MAVWSEDGQCYEAEIEEIDEENGTAAITFAGYGNAEVTPLLNLKPVEEGRKAKEDSGNKP 160

Query: 122 EATKQAIKRKIAQAASVDFQSRNLPSRLRIEPDDPEDVKATKRKKIHAFKSKMRIEQLEV 181
            + K+ I ++                            +  K+KK  A K   RI++LE 
Sbjct: 161 MSKKEMIAQQ----------------------------REYKKKK--ALKKAQRIKELEQ 220

Query: 182 TQNKRQNAWQQFQS-AKGKSKKIGFFSGRKKESIFKSPDDPNGKVGVTGSG---KGLTEF 241
            +  ++  WQQF + A  K+KK     G+ K SIF SP+   GKVGV   G   K +T++
Sbjct: 221 EREDQKVKWQQFNNRAYSKNKK-----GQVKRSIFASPESVTGKVGVGTCGIADKPMTQY 230

[Close]
BLAST of CmoCh04G020000 vs. Swiss-Prot
Match: SPF30_PONAB (Survival of motor neuron-related-splicing factor 30 OS=Pongo abelii GN=SMNDC1 PE=2 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 3.1e-08
Identity = 68/246 (27.64%), Postives = 109/246 (44.31%), Query Frame = 1 

Query: 2   QVIALTEELLSTAKQNEISGSNVETGDDSASISFQQTKGNKMEAESMSDYHEKFPIGTKV 61
           +VI LT++LLST     ++ S+          SF  T+               + +G K 
Sbjct: 41  EVIELTKDLLSTQPSETLASSD----------SFASTQPT-----------HSWKVGDKC 100

Query: 62  QAVWSEDGEWYDATIEA-HTVNGFY-VSYDGWGNKEEVDPANVRTIQLEVNALLEAERMA 121
            A+WSEDG+ Y+A IE     NG   +++ G+GN E     N++ ++    A  ++    
Sbjct: 101 MAIWSEDGQCYEAEIEEIDEENGTAAITFAGYGNAEVTPLLNLKPVEEGRKAKEDSGNKP 160

Query: 122 EATKQAIKRKIAQAASVDFQSRNLPSRLRIEPDDPEDVKATKRKKIHAFKSKMRIEQLEV 181
            + K+ I ++                            +  K+KK  A K   RI++LE 
Sbjct: 161 MSKKEMIAQQ----------------------------REYKKKK--ALKKAQRIKELEQ 220

Query: 182 TQNKRQNAWQQFQS-AKGKSKKIGFFSGRKKESIFKSPDDPNGKVGVTGSG---KGLTEF 241
            +  ++  WQQF + A  K+KK     G+ K SIF SP+   GKVGV   G   K +T++
Sbjct: 221 EREDQKVKWQQFNNRAYSKNKK-----GQVKRSIFASPESVTGKVGVGTCGIADKPMTQY 230

[Close]
BLAST of CmoCh04G020000 vs. Swiss-Prot
Match: SPF30_BOVIN (Survival of motor neuron-related-splicing factor 30 OS=Bos taurus GN=SMNDC1 PE=2 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 7.0e-08
Identity = 67/246 (27.24%), Postives = 109/246 (44.31%), Query Frame = 1 

Query: 2   QVIALTEELLSTAKQNEISGSNVETGDDSASISFQQTKGNKMEAESMSDYHEKFPIGTKV 61
           +VI LT++LLST     ++ S+          +F  T+               + +G K 
Sbjct: 41  EVIELTKDLLSTQPSETLASSD----------NFASTQPT-----------HSWKVGDKC 100

Query: 62  QAVWSEDGEWYDATIEA-HTVNGFY-VSYDGWGNKEEVDPANVRTIQLEVNALLEAERMA 121
            A+WSEDG+ Y+A IE     NG   +++ G+GN E     N++ ++    A  ++    
Sbjct: 101 MAIWSEDGQCYEAEIEEIDEENGTAAITFAGYGNAEVTPLLNLKPVEEGRKAKEDSGNKP 160

Query: 122 EATKQAIKRKIAQAASVDFQSRNLPSRLRIEPDDPEDVKATKRKKIHAFKSKMRIEQLEV 181
            + K+ I ++                            +  K+KK  A K   RI++LE 
Sbjct: 161 MSKKEMIAQQ----------------------------REYKKKK--ALKKAQRIKELEQ 220

Query: 182 TQNKRQNAWQQFQS-AKGKSKKIGFFSGRKKESIFKSPDDPNGKVGVTGSG---KGLTEF 241
            +  ++  WQQF + A  K+KK     G+ K SIF SP+   GKVGV   G   K +T++
Sbjct: 221 EREDQKVKWQQFNNRAYSKNKK-----GQVKRSIFASPESVTGKVGVGTCGIADKPMTQY 230

[Close]
BLAST of CmoCh04G020000 vs. Swiss-Prot
Match: SPF30_MOUSE (Survival of motor neuron-related-splicing factor 30 OS=Mus musculus GN=Smndc1 PE=1 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 2.7e-07
Identity = 68/246 (27.64%), Postives = 108/246 (43.90%), Query Frame = 1 

Query: 2   QVIALTEELLSTAKQNEISGSNVETGDDSASISFQQTKGNKMEAESMSDYHEKFPIGTKV 61
           +VI LT++LLST     ++ S+          SF  T+               + +G K 
Sbjct: 41  EVIELTKDLLSTQPSETLASSD----------SFASTQPT-----------HSWKVGDKC 100

Query: 62  QAVWSEDGEWYDATIEA-HTVNGFY-VSYDGWGNKEEVDPANVRTIQLEVNALLEAERMA 121
            AVWSEDG+ Y+A IE     NG   +++  +GN E     N++ ++    A  ++    
Sbjct: 101 MAVWSEDGQCYEAEIEEIDEENGTAAITFAVYGNAEVTPLLNLKPVEEGRKAKEDSGNKP 160

Query: 122 EATKQAIKRKIAQAASVDFQSRNLPSRLRIEPDDPEDVKATKRKKIHAFKSKMRIEQLEV 181
            + K+ I ++                            +  K+KK  A K   RI++LE 
Sbjct: 161 MSKKEMIAQQ----------------------------REYKKKK--ALKKAQRIKELEQ 220

Query: 182 TQNKRQNAWQQFQS-AKGKSKKIGFFSGRKKESIFKSPDDPNGKVGVTGSG---KGLTEF 241
            +  ++  WQQF + A  K+KK     G+ K SIF SP+   GKVGV   G   K +T++
Sbjct: 221 EREDQKVKWQQFNNRAYSKNKK-----GQVKRSIFASPESVTGKVGVGTCGIADKPMTQY 230

[Close]
BLAST of CmoCh04G020000 vs. TrEMBL
Match: B3TLK4_CUCSA (Putative nucleic acid binding protein OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 445.7 bits (1145), Expect = 3.9e-122
Identity = 231/253 (91.30%), Postives = 240/253 (94.86%), Query Frame = 1 

Query: 1   MQVIALTEELLSTAKQNEISGSNVETGDDSASISFQQTKGNKMEAESMSDYHEKFPIGTK 60
           MQVIALTEELLSTAKQNE+SGSNVETGDDSASI FQQ+K N+MEA SMSDYHEKFPIGTK
Sbjct: 1   MQVIALTEELLSTAKQNEVSGSNVETGDDSASIGFQQSKENEMEAGSMSDYHEKFPIGTK 60

Query: 61  VQAVWSEDGEWYDATIEAHTVNGFYVSYDGWGNKEEVDPANVRTIQLEVNALLEAERMAE 120
           VQAVWSEDGEWYDATIEAHTVNGFYVSYDGWGNKEEVDPANVRTIQLEVN LLEAER+AE
Sbjct: 61  VQAVWSEDGEWYDATIEAHTVNGFYVSYDGWGNKEEVDPANVRTIQLEVNPLLEAERVAE 120

Query: 121 ATKQAIKRKIAQAASVDFQSRNLPSRLRIEPDDPEDVKATKRKKIHAFKSKMRIEQLEVT 180
           ATKQAIKRKIAQAASVDFQSRNLPS+LRIEPDDPEDVKATKRKKIHAFKSKMRIEQLEVT
Sbjct: 121 ATKQAIKRKIAQAASVDFQSRNLPSKLRIEPDDPEDVKATKRKKIHAFKSKMRIEQLEVT 180

Query: 181 QNKRQNAWQQFQSAKGKSKKIGFFSGRKKESIFKSPDDPNGKVGVTGSGKGLTEFQKREK 240
           QNKRQNAWQQFQ+AKGKSKKIGFFSGRK+ESIFKSPDDPNGKVGVTGSGKGLTEFQKRE 
Sbjct: 181 QNKRQNAWQQFQTAKGKSKKIGFFSGRKRESIFKSPDDPNGKVGVTGSGKGLTEFQKREN 240

Query: 241 HLHLKGASVEMDD 254
               +    EMD+
Sbjct: 241 TCISRVQRWEMDE 253

[Close]
BLAST of CmoCh04G020000 vs. TrEMBL
Match: M5XFY1_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009157mg PE=4 SV=1)

HSP 1 Score: 387.1 bits (993), Expect = 1.6e-104
Identity = 201/253 (79.45%), Postives = 229/253 (90.51%), Query Frame = 1 

Query: 2   QVIALTEELLSTAKQNEISGSNVETGDDSASISFQQTKGNKMEAESMSDYHEKFPIGTKV 61
           +VIALTEELL+TAKQN+ SG +  T D SAS S  QT+ N+ ++ S+SDYH+KFP GTKV
Sbjct: 50  EVIALTEELLATAKQNQSSGIDFGTSD-SASPSLPQTQRNENDSGSISDYHDKFPPGTKV 109

Query: 62  QAVWSEDGEWYDATIEAHTVNGFYVSYDGWGNKEEVDPANVRTIQL-EVNALLEAERMAE 121
           QAVWSEDGEWYDATIE+ T NG++V+Y+GWGN+EEVDPANVR IQ   VNALLEAER+AE
Sbjct: 110 QAVWSEDGEWYDATIESLTPNGYFVTYEGWGNREEVDPANVRPIQEGAVNALLEAERVAE 169

Query: 122 ATKQAIKRKIAQAASVDFQSRNLPSRLRIEPDDPEDVKATKRKKIHAFKSKMRIEQLEVT 181
           ATKQAIKRKIAQAAS+DFQSR+LP++LRIEPDDPEDVKATKRKKIH+FKSKMR+EQLEVT
Sbjct: 170 ATKQAIKRKIAQAASIDFQSRSLPAKLRIEPDDPEDVKATKRKKIHSFKSKMRMEQLEVT 229

Query: 182 QNKRQNAWQQFQSAKGKSKKIGFFSGRKKESIFKSPDDPNGKVGVTGSGKGLTEFQKREK 241
           QNKRQNAWQQFQ+ KGK+KKIGFFSGRK+ESIFKSPDDP GKVGVTGSGKGLT+FQKREK
Sbjct: 230 QNKRQNAWQQFQTTKGKTKKIGFFSGRKRESIFKSPDDPFGKVGVTGSGKGLTDFQKREK 289

Query: 242 HLHLKGASVEMDD 254
           HLHLKG + E DD
Sbjct: 290 HLHLKGGTAENDD 301

[Close]
BLAST of CmoCh04G020000 vs. TrEMBL
Match: A0A061G881_THECC (Nucleic acid binding,RNA binding isoform 2 OS=Theobroma cacao GN=TCM_027140 PE=4 SV=1)

HSP 1 Score: 375.9 bits (964), Expect = 3.8e-101
Identity = 195/252 (77.38%), Postives = 218/252 (86.51%), Query Frame = 1 

Query: 2   QVIALTEELLSTAKQNEISGSNVETGDDSASISFQQTKGNKMEAESMSDYHEKFPIGTKV 61
           +VIALTEELL+TAKQNEISGS++ T       S+        EA   SDY +KFP+GTKV
Sbjct: 48  EVIALTEELLATAKQNEISGSDIGT-------SYSAPPAQSKEAGKTSDYGDKFPVGTKV 107

Query: 62  QAVWSEDGEWYDATIEAHTVNGFYVSYDGWGNKEEVDPANVRTIQLEVNALLEAERMAEA 121
           QAVWSEDGEWYDAT+EA T NG++V YDGWGNKEEVDPANVR I  E NALLEAE++AEA
Sbjct: 108 QAVWSEDGEWYDATVEAITPNGYFVLYDGWGNKEEVDPANVRAI--EYNALLEAEKVAEA 167

Query: 122 TKQAIKRKIAQAASVDFQSRNLPSRLRIEPDDPEDVKATKRKKIHAFKSKMRIEQLEVTQ 181
           TKQAIKRKIAQAASVDFQSR+LP++LRI  DDPEDVKA KRKKIHAFKSKMR EQLEV Q
Sbjct: 168 TKQAIKRKIAQAASVDFQSRSLPAKLRITADDPEDVKAAKRKKIHAFKSKMRFEQLEVAQ 227

Query: 182 NKRQNAWQQFQSAKGKSKKIGFFSGRKKESIFKSPDDPNGKVGVTGSGKGLTEFQKREKH 241
           NKRQNAWQQFQ+ KGK+KK+GFFSGRK+ESIFKSPDDP+GKVGVTGSGKGLTEFQKREKH
Sbjct: 228 NKRQNAWQQFQTTKGKTKKVGFFSGRKRESIFKSPDDPHGKVGVTGSGKGLTEFQKREKH 287

Query: 242 LHLKGASVEMDD 254
           LHLKG +VE++D
Sbjct: 288 LHLKGGNVEIND 290

[Close]
BLAST of CmoCh04G020000 vs. TrEMBL
Match: A0A0D2VAI3_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_010G142900 PE=4 SV=1)

HSP 1 Score: 375.6 bits (963), Expect = 4.9e-101
Identity = 197/252 (78.17%), Postives = 220/252 (87.30%), Query Frame = 1 

Query: 2   QVIALTEELLSTAKQNEISGSNVETGDDSASISFQQTKGNKMEAESMSDYHEKFPIGTKV 61
           +VIALTEELL+TAKQNEISGS++ T   S S +  Q+K    E    SDY +KFP+GTKV
Sbjct: 45  EVIALTEELLATAKQNEISGSDIGT---SVSAAAAQSK----EMVKTSDYEDKFPVGTKV 104

Query: 62  QAVWSEDGEWYDATIEAHTVNGFYVSYDGWGNKEEVDPANVRTIQLEVNALLEAERMAEA 121
           QAVWSEDGEWYDATIEA T NG+Y S+DGWGNKEEVDPANVR I  E NALLEAE++AEA
Sbjct: 105 QAVWSEDGEWYDATIEAVTPNGYYASFDGWGNKEEVDPANVRAI--EYNALLEAEKVAEA 164

Query: 122 TKQAIKRKIAQAASVDFQSRNLPSRLRIEPDDPEDVKATKRKKIHAFKSKMRIEQLEVTQ 181
           TKQAIKRKIAQAASVDFQSR+LP++LRI  DDPEDVKA KRKKIHAFKSKMR+EQLEV Q
Sbjct: 165 TKQAIKRKIAQAASVDFQSRSLPAKLRITSDDPEDVKAAKRKKIHAFKSKMRLEQLEVAQ 224

Query: 182 NKRQNAWQQFQSAKGKSKKIGFFSGRKKESIFKSPDDPNGKVGVTGSGKGLTEFQKREKH 241
           NKRQNAWQQFQ+ KGK+KK+GFFSGRK+ESIFKSPDDP GKVGVTGSGKGLT+FQKREKH
Sbjct: 225 NKRQNAWQQFQTTKGKTKKVGFFSGRKRESIFKSPDDPQGKVGVTGSGKGLTDFQKREKH 284

Query: 242 LHLKGASVEMDD 254
           LHLKG +VE+ D
Sbjct: 285 LHLKGGNVEISD 287

[Close]
BLAST of CmoCh04G020000 vs. TrEMBL
Match: A0A0D2VAH8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_010G142900 PE=4 SV=1)

HSP 1 Score: 375.6 bits (963), Expect = 4.9e-101
Identity = 197/252 (78.17%), Postives = 220/252 (87.30%), Query Frame = 1 

Query: 2   QVIALTEELLSTAKQNEISGSNVETGDDSASISFQQTKGNKMEAESMSDYHEKFPIGTKV 61
           +VIALTEELL+TAKQNEISGS++ T   S S +  Q+K    E    SDY +KFP+GTKV
Sbjct: 48  EVIALTEELLATAKQNEISGSDIGT---SVSAAAAQSK----EMVKTSDYEDKFPVGTKV 107

Query: 62  QAVWSEDGEWYDATIEAHTVNGFYVSYDGWGNKEEVDPANVRTIQLEVNALLEAERMAEA 121
           QAVWSEDGEWYDATIEA T NG+Y S+DGWGNKEEVDPANVR I  E NALLEAE++AEA
Sbjct: 108 QAVWSEDGEWYDATIEAVTPNGYYASFDGWGNKEEVDPANVRAI--EYNALLEAEKVAEA 167

Query: 122 TKQAIKRKIAQAASVDFQSRNLPSRLRIEPDDPEDVKATKRKKIHAFKSKMRIEQLEVTQ 181
           TKQAIKRKIAQAASVDFQSR+LP++LRI  DDPEDVKA KRKKIHAFKSKMR+EQLEV Q
Sbjct: 168 TKQAIKRKIAQAASVDFQSRSLPAKLRITSDDPEDVKAAKRKKIHAFKSKMRLEQLEVAQ 227

Query: 182 NKRQNAWQQFQSAKGKSKKIGFFSGRKKESIFKSPDDPNGKVGVTGSGKGLTEFQKREKH 241
           NKRQNAWQQFQ+ KGK+KK+GFFSGRK+ESIFKSPDDP GKVGVTGSGKGLT+FQKREKH
Sbjct: 228 NKRQNAWQQFQTTKGKTKKVGFFSGRKRESIFKSPDDPQGKVGVTGSGKGLTDFQKREKH 287

Query: 242 LHLKGASVEMDD 254
           LHLKG +VE+ D
Sbjct: 288 LHLKGGNVEISD 290

[Close]
BLAST of CmoCh04G020000 vs. TAIR10
Match: AT2G02570.1 (AT2G02570.1 nucleic acid binding;RNA binding)

HSP 1 Score: 320.1 bits (819), Expect = 1.2e-87
Identity = 169/260 (65.00%), Postives = 206/260 (79.23%), Query Frame = 1 

Query: 2   QVIALTEELLSTAKQNEISGSNVETGDDSASISFQQTKGN--------KMEAESMSDYHE 61
           +VIALTEE+L+TAKQNEIS S+       A +S + T G+        K    +   +  
Sbjct: 49  EVIALTEEVLATAKQNEISLSD-------AGVSAEATPGSPDLEGAWEKTGLRNDPIHEG 108

Query: 62  KFPIGTKVQAVWSEDGEWYDATIEAHTVNGFYVSYDGWGNKEEVDPANVRTIQLEVNALL 121
           KFP+GTKVQAV+S+DGEWYDATIEAHT NG++V+YD WGNKEEVDP NVR I  E NA++
Sbjct: 109 KFPVGTKVQAVFSDDGEWYDATIEAHTANGYFVAYDEWGNKEEVDPDNVRPI--EQNAIV 168

Query: 122 EAERMAEATKQAIKRKIAQAASVDFQSRNLPSRLRIEPDDPEDVKATKRKKIHAFKSKMR 181
           EAER+A+ATK A+KRKI +AAS D+Q++ LP++L+I+P+DPEDVK  KRKKIHAFKSK R
Sbjct: 169 EAERLAQATKNALKRKIEKAASSDYQTKTLPAKLKIDPNDPEDVKIAKRKKIHAFKSKAR 228

Query: 182 IEQLEVTQNKRQNAWQQFQSAKGKSKKIGFFSGRKKESIFKSPDDPNGKVGVTGSGKGLT 241
            EQLEV QNK+QN WQQFQ+ K K+KK+GFF+GRKKESIFKSP+DP GKVGVTGSGKGLT
Sbjct: 229 FEQLEVVQNKKQNDWQQFQTTKAKTKKVGFFTGRKKESIFKSPEDPFGKVGVTGSGKGLT 288

Query: 242 EFQKREKHLHLKGASVEMDD 254
           +FQKREKHLHLK  + E  D
Sbjct: 289 DFQKREKHLHLKSGNAEGTD 299

[Close]
BLAST of CmoCh04G020000 vs. NCBI nr
Match: gi|659121301|ref|XP_008460591.1| (PREDICTED: survival of motor neuron-related-splicing factor 30 isoform X1 [Cucumis melo])

HSP 1 Score: 473.8 bits (1218), Expect = 1.9e-130
Identity = 243/253 (96.05%), Postives = 249/253 (98.42%), Query Frame = 1 

Query: 1   MQVIALTEELLSTAKQNEISGSNVETGDDSASISFQQTKGNKMEAESMSDYHEKFPIGTK 60
           MQVIALTEELLSTAKQNE+SGSNVETGDDSASI FQQ K N+MEA SMSDYHEKFPIGTK
Sbjct: 22  MQVIALTEELLSTAKQNEVSGSNVETGDDSASIGFQQPKENEMEAGSMSDYHEKFPIGTK 81

Query: 61  VQAVWSEDGEWYDATIEAHTVNGFYVSYDGWGNKEEVDPANVRTIQLEVNALLEAERMAE 120
           VQAVWSEDGEWYDATIEAHTVNGFYVSYDGWGNKEEVDPANVRTIQLEVNALLEAERMAE
Sbjct: 82  VQAVWSEDGEWYDATIEAHTVNGFYVSYDGWGNKEEVDPANVRTIQLEVNALLEAERMAE 141

Query: 121 ATKQAIKRKIAQAASVDFQSRNLPSRLRIEPDDPEDVKATKRKKIHAFKSKMRIEQLEVT 180
           ATKQAIKRKIAQAASVDFQSRNLPS+LRIEPDDPEDVKATKRKKIHAFKSKMRIEQLEVT
Sbjct: 142 ATKQAIKRKIAQAASVDFQSRNLPSKLRIEPDDPEDVKATKRKKIHAFKSKMRIEQLEVT 201

Query: 181 QNKRQNAWQQFQSAKGKSKKIGFFSGRKKESIFKSPDDPNGKVGVTGSGKGLTEFQKREK 240
           QNKRQNAWQQFQSAKGKSKKIGFFSGRK+ESIFKSPDDPNGKVGVTGSGKGLTEFQKREK
Sbjct: 202 QNKRQNAWQQFQSAKGKSKKIGFFSGRKRESIFKSPDDPNGKVGVTGSGKGLTEFQKREK 261

Query: 241 HLHLKGASVEMDD 254
           HLHLKGA+VEMD+
Sbjct: 262 HLHLKGATVEMDE 274

[Close]
BLAST of CmoCh04G020000 vs. NCBI nr
Match: gi|659121305|ref|XP_008460593.1| (PREDICTED: survival of motor neuron-related-splicing factor 30 isoform X2 [Cucumis melo])

HSP 1 Score: 471.1 bits (1211), Expect = 1.2e-129
Identity = 241/252 (95.63%), Postives = 248/252 (98.41%), Query Frame = 1 

Query: 2   QVIALTEELLSTAKQNEISGSNVETGDDSASISFQQTKGNKMEAESMSDYHEKFPIGTKV 61
           +VIALTEELLSTAKQNE+SGSNVETGDDSASI FQQ K N+MEA SMSDYHEKFPIGTKV
Sbjct: 18  EVIALTEELLSTAKQNEVSGSNVETGDDSASIGFQQPKENEMEAGSMSDYHEKFPIGTKV 77

Query: 62  QAVWSEDGEWYDATIEAHTVNGFYVSYDGWGNKEEVDPANVRTIQLEVNALLEAERMAEA 121
           QAVWSEDGEWYDATIEAHTVNGFYVSYDGWGNKEEVDPANVRTIQLEVNALLEAERMAEA
Sbjct: 78  QAVWSEDGEWYDATIEAHTVNGFYVSYDGWGNKEEVDPANVRTIQLEVNALLEAERMAEA 137

Query: 122 TKQAIKRKIAQAASVDFQSRNLPSRLRIEPDDPEDVKATKRKKIHAFKSKMRIEQLEVTQ 181
           TKQAIKRKIAQAASVDFQSRNLPS+LRIEPDDPEDVKATKRKKIHAFKSKMRIEQLEVTQ
Sbjct: 138 TKQAIKRKIAQAASVDFQSRNLPSKLRIEPDDPEDVKATKRKKIHAFKSKMRIEQLEVTQ 197

Query: 182 NKRQNAWQQFQSAKGKSKKIGFFSGRKKESIFKSPDDPNGKVGVTGSGKGLTEFQKREKH 241
           NKRQNAWQQFQSAKGKSKKIGFFSGRK+ESIFKSPDDPNGKVGVTGSGKGLTEFQKREKH
Sbjct: 198 NKRQNAWQQFQSAKGKSKKIGFFSGRKRESIFKSPDDPNGKVGVTGSGKGLTEFQKREKH 257

Query: 242 LHLKGASVEMDD 254
           LHLKGA+VEMD+
Sbjct: 258 LHLKGATVEMDE 269

[Close]
BLAST of CmoCh04G020000 vs. NCBI nr
Match: gi|449450115|ref|XP_004142809.1| (PREDICTED: survival of motor neuron-related-splicing factor 30 isoform X2 [Cucumis sativus])

HSP 1 Score: 469.9 bits (1208), Expect = 2.7e-129
Identity = 240/253 (94.86%), Postives = 249/253 (98.42%), Query Frame = 1 

Query: 1   MQVIALTEELLSTAKQNEISGSNVETGDDSASISFQQTKGNKMEAESMSDYHEKFPIGTK 60
           MQVIALTEELLSTAKQNE+SGSNVETGDDSASI FQQ+K N+MEA SMSDYHEKFPIGTK
Sbjct: 1   MQVIALTEELLSTAKQNEVSGSNVETGDDSASIGFQQSKENEMEAGSMSDYHEKFPIGTK 60

Query: 61  VQAVWSEDGEWYDATIEAHTVNGFYVSYDGWGNKEEVDPANVRTIQLEVNALLEAERMAE 120
           VQAVWSEDGEWYDATIEAHTVNGFYVSYDGWGNKEEVDPANVRTIQLEVN LLEAER+AE
Sbjct: 61  VQAVWSEDGEWYDATIEAHTVNGFYVSYDGWGNKEEVDPANVRTIQLEVNPLLEAERVAE 120

Query: 121 ATKQAIKRKIAQAASVDFQSRNLPSRLRIEPDDPEDVKATKRKKIHAFKSKMRIEQLEVT 180
           ATKQAIKRKIAQAASVDFQSRNLPS+LRIEPDDPEDVKATKRKKIHAFKSKMRIEQLEVT
Sbjct: 121 ATKQAIKRKIAQAASVDFQSRNLPSKLRIEPDDPEDVKATKRKKIHAFKSKMRIEQLEVT 180

Query: 181 QNKRQNAWQQFQSAKGKSKKIGFFSGRKKESIFKSPDDPNGKVGVTGSGKGLTEFQKREK 240
           QNKRQNAWQQFQ+AKGKSKKIGFFSGRK+ESIFKSPDDPNGKVGVTGSGKGLTEFQKREK
Sbjct: 181 QNKRQNAWQQFQTAKGKSKKIGFFSGRKRESIFKSPDDPNGKVGVTGSGKGLTEFQKREK 240

Query: 241 HLHLKGASVEMDD 254
           HLHLKGA+VEMD+
Sbjct: 241 HLHLKGATVEMDE 253

[Close]
BLAST of CmoCh04G020000 vs. NCBI nr
Match: gi|449450113|ref|XP_004142808.1| (PREDICTED: survival of motor neuron-related-splicing factor 30 isoform X1 [Cucumis sativus])

HSP 1 Score: 467.2 bits (1201), Expect = 1.8e-128
Identity = 238/252 (94.44%), Postives = 248/252 (98.41%), Query Frame = 1 

Query: 2   QVIALTEELLSTAKQNEISGSNVETGDDSASISFQQTKGNKMEAESMSDYHEKFPIGTKV 61
           +VIALTEELLSTAKQNE+SGSNVETGDDSASI FQQ+K N+MEA SMSDYHEKFPIGTKV
Sbjct: 48  EVIALTEELLSTAKQNEVSGSNVETGDDSASIGFQQSKENEMEAGSMSDYHEKFPIGTKV 107

Query: 62  QAVWSEDGEWYDATIEAHTVNGFYVSYDGWGNKEEVDPANVRTIQLEVNALLEAERMAEA 121
           QAVWSEDGEWYDATIEAHTVNGFYVSYDGWGNKEEVDPANVRTIQLEVN LLEAER+AEA
Sbjct: 108 QAVWSEDGEWYDATIEAHTVNGFYVSYDGWGNKEEVDPANVRTIQLEVNPLLEAERVAEA 167

Query: 122 TKQAIKRKIAQAASVDFQSRNLPSRLRIEPDDPEDVKATKRKKIHAFKSKMRIEQLEVTQ 181
           TKQAIKRKIAQAASVDFQSRNLPS+LRIEPDDPEDVKATKRKKIHAFKSKMRIEQLEVTQ
Sbjct: 168 TKQAIKRKIAQAASVDFQSRNLPSKLRIEPDDPEDVKATKRKKIHAFKSKMRIEQLEVTQ 227

Query: 182 NKRQNAWQQFQSAKGKSKKIGFFSGRKKESIFKSPDDPNGKVGVTGSGKGLTEFQKREKH 241
           NKRQNAWQQFQ+AKGKSKKIGFFSGRK+ESIFKSPDDPNGKVGVTGSGKGLTEFQKREKH
Sbjct: 228 NKRQNAWQQFQTAKGKSKKIGFFSGRKRESIFKSPDDPNGKVGVTGSGKGLTEFQKREKH 287

Query: 242 LHLKGASVEMDD 254
           LHLKGA+VEMD+
Sbjct: 288 LHLKGATVEMDE 299

[Close]
BLAST of CmoCh04G020000 vs. NCBI nr
Match: gi|793419603|ref|NP_001292613.1| (survival of motor neuron-related-splicing factor 30 [Cucumis sativus])

HSP 1 Score: 445.7 bits (1145), Expect = 5.5e-122
Identity = 231/253 (91.30%), Postives = 240/253 (94.86%), Query Frame = 1 

Query: 1   MQVIALTEELLSTAKQNEISGSNVETGDDSASISFQQTKGNKMEAESMSDYHEKFPIGTK 60
           MQVIALTEELLSTAKQNE+SGSNVETGDDSASI FQQ+K N+MEA SMSDYHEKFPIGTK
Sbjct: 1   MQVIALTEELLSTAKQNEVSGSNVETGDDSASIGFQQSKENEMEAGSMSDYHEKFPIGTK 60

Query: 61  VQAVWSEDGEWYDATIEAHTVNGFYVSYDGWGNKEEVDPANVRTIQLEVNALLEAERMAE 120
           VQAVWSEDGEWYDATIEAHTVNGFYVSYDGWGNKEEVDPANVRTIQLEVN LLEAER+AE
Sbjct: 61  VQAVWSEDGEWYDATIEAHTVNGFYVSYDGWGNKEEVDPANVRTIQLEVNPLLEAERVAE 120

Query: 121 ATKQAIKRKIAQAASVDFQSRNLPSRLRIEPDDPEDVKATKRKKIHAFKSKMRIEQLEVT 180
           ATKQAIKRKIAQAASVDFQSRNLPS+LRIEPDDPEDVKATKRKKIHAFKSKMRIEQLEVT
Sbjct: 121 ATKQAIKRKIAQAASVDFQSRNLPSKLRIEPDDPEDVKATKRKKIHAFKSKMRIEQLEVT 180

Query: 181 QNKRQNAWQQFQSAKGKSKKIGFFSGRKKESIFKSPDDPNGKVGVTGSGKGLTEFQKREK 240
           QNKRQNAWQQFQ+AKGKSKKIGFFSGRK+ESIFKSPDDPNGKVGVTGSGKGLTEFQKRE 
Sbjct: 181 QNKRQNAWQQFQTAKGKSKKIGFFSGRKRESIFKSPDDPNGKVGVTGSGKGLTEFQKREN 240

Query: 241 HLHLKGASVEMDD 254
               +    EMD+
Sbjct: 241 TCISRVQRWEMDE 253

The following BLAST results are available for this feature:
BLAST of CmoCh04G020000 vs. Swiss-Prot
Match NameE-valueIdentityDescription
SPF30_XENTR3.4e-1029.55Survival of motor neuron-related-splicing factor 30 OS=Xenopus tropicalis GN=smn... [more]
SPF30_HUMAN2.4e-0828.05Survival of motor neuron-related-splicing factor 30 OS=Homo sapiens GN=SMNDC1 PE... [more]
SPF30_PONAB3.1e-0827.64Survival of motor neuron-related-splicing factor 30 OS=Pongo abelii GN=SMNDC1 PE... [more]
SPF30_BOVIN7.0e-0827.24Survival of motor neuron-related-splicing factor 30 OS=Bos taurus GN=SMNDC1 PE=2... [more]
SPF30_MOUSE2.7e-0727.64Survival of motor neuron-related-splicing factor 30 OS=Mus musculus GN=Smndc1 PE... [more]
BLAST of CmoCh04G020000 vs. TrEMBL
Match NameE-valueIdentityDescription
B3TLK4_CUCSA3.9e-12291.30Putative nucleic acid binding protein OS=Cucumis sativus PE=2 SV=1[more]
M5XFY1_PRUPE1.6e-10479.45Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009157mg PE=4 SV=1[more]
A0A061G881_THECC3.8e-10177.38Nucleic acid binding,RNA binding isoform 2 OS=Theobroma cacao GN=TCM_027140 PE=4... [more]
A0A0D2VAI3_GOSRA4.9e-10178.17Uncharacterized protein OS=Gossypium raimondii GN=B456_010G142900 PE=4 SV=1[more]
A0A0D2VAH8_GOSRA4.9e-10178.17Uncharacterized protein OS=Gossypium raimondii GN=B456_010G142900 PE=4 SV=1[more]
BLAST of CmoCh04G020000 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G02570.11.2e-8765.00 nucleic acid binding;RNA binding[more]
BLAST of CmoCh04G020000 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659121301|ref|XP_008460591.1|1.9e-13096.05PREDICTED: survival of motor neuron-related-splicing factor 30 isoform X1 [Cucum... [more]
gi|659121305|ref|XP_008460593.1|1.2e-12995.63PREDICTED: survival of motor neuron-related-splicing factor 30 isoform X2 [Cucum... [more]
gi|449450115|ref|XP_004142809.1|2.7e-12994.86PREDICTED: survival of motor neuron-related-splicing factor 30 isoform X2 [Cucum... [more]
gi|449450113|ref|XP_004142808.1|1.8e-12894.44PREDICTED: survival of motor neuron-related-splicing factor 30 isoform X1 [Cucum... [more]
gi|793419603|ref|NP_001292613.1|5.5e-12291.30survival of motor neuron-related-splicing factor 30 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002999Tudor
IPR010304Survival_motor_neuron
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO:0005737cytoplasm
Vocabulary: Biological Process
TermDefinition
GO:0006397mRNA processing
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006397 mRNA processing
cellular_component GO:0005737 cytoplasm
cellular_component GO:0005634 nucleus
molecular_function GO:0003723 RNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh04G020000.1CmoCh04G020000.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002999Tudor domainSMARTSM00333TUDOR_7coord: 53..110
score: 1.7
IPR002999Tudor domainPROFILEPS50304TUDORcoord: 54..112
score: 13
IPR010304Survival motor neuronPFAMPF06003SMNcoord: 16..111
score: 6.
NoneNo IPR availableunknownCoilCoilcoord: 112..132
scor
NoneNo IPR availableGENE3DG3DSA:2.30.30.140coord: 54..106
score: 1.0
NoneNo IPR availableunknownSSF63748Tudor/PWWP/MBTcoord: 54..105
score: 1.2

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh04G020000Cucsa.011580Cucumber (Gy14) v1cgycmoB0546
CmoCh04G020000CmaCh04G018970Cucurbita maxima (Rimu)cmacmoB728
CmoCh04G020000Cla001905Watermelon (97103) v1cmowmB728
CmoCh04G020000Csa5G526860Cucumber (Chinese Long) v2cmocuB752
CmoCh04G020000MELO3C022928Melon (DHL92) v3.5.1cmomeB639
CmoCh04G020000CSPI05G18530Wild cucumber (PI 183967)cmocpiB764
CmoCh04G020000Lsi11G000990Bottle gourd (USVL1VR-Ls)cmolsiB623
CmoCh04G020000Cp4.1LG01g17210Cucurbita pepo (Zucchini)cmocpeB677
CmoCh04G020000CsaV3_5G027420Cucumber (Chinese Long) v3cmocucB0892
CmoCh04G020000Cla97C11G206650Watermelon (97103) v2cmowmbB712
CmoCh04G020000BhiUN159G28Wax gourdcmowgoB0873
CmoCh04G020000CsGy5G018180Cucumber (Gy14) v2cgybcmoB669
CmoCh04G020000Carg26175Silver-seed gourdcarcmoB0392
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh04G020000Cucumber (Gy14) v1cgycmoB0522
CmoCh04G020000Wild cucumber (PI 183967)cmocpiB754
CmoCh04G020000Cucumber (Chinese Long) v2cmocuB745
CmoCh04G020000Watermelon (Charleston Gray)cmowcgB623
CmoCh04G020000Watermelon (Charleston Gray)cmowcgB629
CmoCh04G020000Watermelon (97103) v1cmowmB733
CmoCh04G020000Cucurbita pepo (Zucchini)cmocpeB673
CmoCh04G020000Cucumber (Gy14) v2cgybcmoB665
CmoCh04G020000Melon (DHL92) v3.6.1cmomedB723
CmoCh04G020000Cucumber (Chinese Long) v3cmocucB0895
CmoCh04G020000Watermelon (97103) v2cmowmbB699
CmoCh04G020000Watermelon (97103) v2cmowmbB706
CmoCh04G020000Wax gourdcmowgoB0906
CmoCh04G020000Wax gourdcmowgoB0914