Lsi10G012310 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi10G012310
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Coffea canephora DH200=94 genomic scaffold, scaffold_24
Location	chr10 : 16588936 .. 16591105 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAACGATATCGAAATTTCGGTCTTCTTTTCCCTCCAAACAGTGTTTGTGTGTATAGCGGCGGAGCGCCGCTGTGTTTTCAGTTTTCAGGAACGGAAGCAGTCTCCTTCAGAAGAGTAATGGAAAATGCTAAGCCAATAACAACCATGTGCGCAGTGATAGCTATGGATCACACTAGTTTCTGTTACAGGGTTTGTTCTATCTGTGAGAGAACACTTCCTGATAAACCATCTTCTTCTCTTTGCAAATTCTGCAACTTCAACGCCTTCAATCCCGGTTCCTCCAAACGCGTCTTTCGTCTTCTTGTGAGTATTTCCGCTTTTCTTACTTGGGAATTTCATTTCAGTATGTGTGAAAAATCTCTTATGATGTTCTTGTAGTTGGAATTCCGCTTGAAATTTGAATGGGAAATGTTGGGGTTATGTTTGTTTTTTTATTGACTCATTGTTGGACTAGATTATATGTTCTTTGGGTTCCTTAAAATTGGTTTGGGCTTGTGCATTGGATTCTTTACATTGAGGTTCTGATTGAGGCTCCTGTATTTCCATTGTTTTTTGGGCAGATGTCAATTGCAACGGATAAGAAAGTACAAACTGTAATATGCTTTGATAGGGCTGCTAGGGTTCTGTTTGGTTGCTCTGCTGATGAGTTTTTCGACTTTGCTAAGCTACATCCTTTTGCTGGTAAATTCCCTCTATGTTTGTGGCTTACTTCTCATTTGTTTGCATGAGTTTCTCTTTAATAGACATAAAGGATTTAGAACGAGGGGCATTTTATTTTGTCAAGAAACTTTCATTAAACAGCATATAGAAAACAACCTAAAGGCAGAGTCCCTTTGTCTAAGAGAAGGGGTCAAACAAAAGCCTTCCTTCAAAGTTCAATGATCGTCAGTAGATGTCTGGAGAATACGTTACAAATACGATTTGTGCTAAAAAATTATCGTCTTTCATGACATTTGGCTTAATCTTCCTTCATCCAAGCTCTTCTGTTTCCATATGAATACTGGTTGAATTTTCATTTTGTACTGCAGCTGAAACTGTAAGTGAAATTCTGGAAGGGGAGATGTTTAGAATCACAATCTCTAAACCGAAGAATGGCAATGCACAACACTCAAGAGTTGTCCATGTTGTTCCTCTGAGTTCAGGTTTTCAGCCAGCAATTTTTAGACTCAGGGAATTGTATGGGGTAAGAAGCTGCTCTTAATTTTCCTTTCTTTGTCATTAGTTCTTCTTATTATGCGTTTTTCCACATGCTTTTCTTTTTCTTGAGGACTATCATCTGAGGTTTGGGTGGATGCTTAGGCAGGCATATTTGAAGCTCCACAATTATTTAGCTGAACTCCCATGGATAAATTTAATTACTGTTTATTAGTATATATATTATTTTGATTAGCAAAAAGATTCGTAATGCACTGAAGATCATTATTTCATATATTGGGGAACTGAGATACATCAATACTTGTTTATCAGGAGGAAGGGAAGTAAATTGAGCTAGTTCCTCGTAGTTGTTTTAAGAGAGATATGGAAGCTCTTGAATTCTCCTCAGTTGTATTGTTGTGGTTTTGTTTTTTCCATAGTGGTGTATTTATAGCAAAGGACGTACGCAGAAATAAGGTTTATTGAAATGGTTTTGGGATTTCATATTCTAAAGTGGAAACTATAATAACTTGGTATAAAGTTATGATGAGGGGAAAGACTCAAGTTAAGCTCCAACTTACGAAATAATTTGGTGTCTTCTACATTTTTAATTGTAAACACCCAATCCTTTTGCTTCTTCCACAGAACAAGAGCTAGTATAACATTGTCTTCACCCGGTGAGCGTCGGTGAAGCTGCACCATGGGATTGTCATTTTATGCATCCAGACAAAAAGAAGCATCAAATTCAAAGGTGTCCCTTCATTTAAGCTCCATTCTTCTTTGTCAGATAATACAAAATTGTGCTAAATGAGCAGATGGGTGAAATTTGAAATTGTCCCTTCAGTTAATATAGCTTTTTTCAATTTAGTTATGTATAGTCAGAATCTGTTCCATTTGTAGCTCTGTTGTCTGTATCCCTTGTTCTGAAACAGTTCAACTTCAAAACTTAATAGATATTCCTTGAGTGCATACTGATCAAGCTGATGCTTTTATGAGTTCAATAAGAAAGAAAATTTGGGTTTAAATTACAAAAGT

mRNA sequence

AAAACGATATCGAAATTTCGGTCTTCTTTTCCCTCCAAACAGTGTTTGTGTGTATAGCGGCGGAGCGCCGCTGTGTTTTCAGTTTTCAGGAACGGAAGCAGTCTCCTTCAGAAGAGTAATGGAAAATGCTAAGCCAATAACAACCATGTGCGCAGTGATAGCTATGGATCACACTAGTTTCTGTTACAGGGTTTGTTCTATCTGTGAGAGAACACTTCCTGATAAACCATCTTCTTCTCTTTGCAAATTCTGCAACTTCAACGCCTTCAATCCCGGTTCCTCCAAACGCGTCTTTCGTCTTCTTATGTCAATTGCAACGGATAAGAAAGTACAAACTGTAATATGCTTTGATAGGGCTGCTAGGGTTCTGTTTGGTTGCTCTGCTGATGAGTTTTTCGACTTTGCTAAGCTACATCCTTTTGCTGCTGAAACTGTAAGTGAAATTCTGGAAGGGGAGATGTTTAGAATCACAATCTCTAAACCGAAGAATGGCAATGCACAACACTCAAGAGTTGTCCATGTTGTTCCTCTGAGTTCAGGTTTTCAGCCAGCAATTTTTAGACTCAGGGAATTGTATGGGGTAAGAAGCTGCTCTTAATTTTCCTTTCTTTGTCATTAGTTCTTCTTATTATGCGTTTTTCCACATGCTTTTCTTTTTCTTGAGGACTATCATCTGAGGTTTGGGTGGATGCTTAGGCAGGCATATTTGAAGCTCCACAATTATTTAGCTGAACTCCCATGGATAAATTTAATTACTGTTTATTAGTATATATATTATTTTGATTAGCAAAAAGATTCGTAATGCACTGAAGATCATTATTTCATATATTGGGGAACTGAGATACATCAATACTTGTTTATCAGGAGGAAGGGAAGTAAATTGAGCTAGTTCCTCGTAGTTGTTTTAAGAGAGATATGGAAGCTCTTGAATTCTCCTCAGTTGTATTGTTGTGGTTTTGTTTTTTCCATAGTGGTGTATTTATAGCAAAGGACGTACGCAGAAATAAGGTTTATTGAAATGGTTTTGGGATTTCATATTCTAAAGTGGAAACTATAATAACTTGGTATAAAGTTATGATGAGGGGAAAGACTCAAGTTAAGCTCCAACTTACGAAATAATTTGGTGTCTTCTACATTTTTAATTGTAAACACCCAATCCTTTTGCTTCTTCCACAGAACAAGAGCTAGTATAACATTGTCTTCACCCGGTGAGCGTCGGTGAAGCTGCACCATGGGATTGTCATTTTATGCATCCAGACAAAAAGAAGCATCAAATTCAAAGGTGTCCCTTCATTTAAGCTCCATTCTTCTTTGTCAGATAATACAAAATTGTGCTAAATGAGCAGATGGGTGAAATTTGAAATTGTCCCTTCAGTTAATATAGCTTTTTTCAATTTAGTTATGTATAGTCAGAATCTGTTCCATTTGTAGCTCTGTTGTCTGTATCCCTTGTTCTGAAACAGTTCAACTTCAAAACTTAATAGATATTCCTTGAGTGCATACTGATCAAGCTGATGCTTTTATGAGTTCAATAAGAAAGAAAATTTGGGTTTAAATTACAAAAGT

Coding sequence (CDS)

ATGGAAAATGCTAAGCCAATAACAACCATGTGCGCAGTGATAGCTATGGATCACACTAGTTTCTGTTACAGGGTTTGTTCTATCTGTGAGAGAACACTTCCTGATAAACCATCTTCTTCTCTTTGCAAATTCTGCAACTTCAACGCCTTCAATCCCGGTTCCTCCAAACGCGTCTTTCGTCTTCTTATGTCAATTGCAACGGATAAGAAAGTACAAACTGTAATATGCTTTGATAGGGCTGCTAGGGTTCTGTTTGGTTGCTCTGCTGATGAGTTTTTCGACTTTGCTAAGCTACATCCTTTTGCTGCTGAAACTGTAAGTGAAATTCTGGAAGGGGAGATGTTTAGAATCACAATCTCTAAACCGAAGAATGGCAATGCACAACACTCAAGAGTTGTCCATGTTGTTCCTCTGAGTTCAGGTTTTCAGCCAGCAATTTTTAGACTCAGGGAATTGTATGGGGTAAGAAGCTGCTCTTAA

Protein sequence

MENAKPITTMCAVIAMDHTSFCYRVCSICERTLPDKPSSSLCKFCNFNAFNPGSSKRVFRLLMSIATDKKVQTVICFDRAARVLFGCSADEFFDFAKLHPFAAETVSEILEGEMFRITISKPKNGNAQHSRVVHVVPLSSGFQPAIFRLRELYGVRSCS

Homology

[Close]

BLAST of Lsi10G012310 vs. TrEMBL
Match: A0A0A0KEN7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G147650 PE=4 SV=1)

HSP 1 Score: 281.2 bits (718), Expect = 7.9e-73
Identity = 141/156 (90.38%), Postives = 145/156 (92.95%), Query Frame = 1


Query: 1   MENAKPITTMCAVIAMDHTSFCYRVCSICERTLPDKPSSSLCKFCNFNAFNPG--SSKRV 60
           MEN KPITTMCAV+AMD+T+FCYRVCSICERTLP  PSS LCKFCNFNAFNPG  SSKRV
Sbjct: 1   MENGKPITTMCAVMAMDYTNFCYRVCSICERTLPVNPSS-LCKFCNFNAFNPGSSSSKRV 60

Query: 61  FRLLMSIATDKKVQTVICFDRAARVLFGCSADEFFDFAKLHPFAAETVSEILEGEMFRIT 120
           FRLLMSIATDKKVQTVICFDR ARVLFGCSADEFFDFAKLHPFAAETVSEILEGEM RIT
Sbjct: 61  FRLLMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKLHPFAAETVSEILEGEMLRIT 120

Query: 121 ISKPKNGNAQHSRVVHVVPLSSGFQPAIFRLRELYG 155
           ISKPKNGNAQHSRVV +VPLSS FQPAI RLRELYG
Sbjct: 121 ISKPKNGNAQHSRVVQIVPLSSCFQPAIIRLRELYG 155

[Close]

BLAST of Lsi10G012310 vs. TrEMBL
Match: M5W0J2_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012661mg PE=4 SV=1)

HSP 1 Score: 244.6 bits (623), Expect = 8.2e-62
Identity = 120/159 (75.47%), Postives = 133/159 (83.65%), Query Frame = 1


Query: 1   MENAKPITTMCAVIAMDHTSFCYRVCSICERTLPDKPSSSLCKFCNFNAFNP--GSSKRV 60
           ME  KP T +C V+A+DHT F YRVCS+CERTLPD P+S LCKFC+ NAFNP    SKR+
Sbjct: 1   MEAEKPTTMLCTVLAIDHTDFSYRVCSVCERTLPDNPTS-LCKFCSVNAFNPRFSRSKRL 60

Query: 61  FRLLMSIATDKKVQTVICFDRAARVLFGCSADEFFDFAKLHPFAAETVSEILEGEMFRIT 120
           FRLLMSIA+D KV TVICFDRAA+VLFGCSADEFFDFAK HPFAA  VS ILEGEMF++T
Sbjct: 61  FRLLMSIASDTKVFTVICFDRAAKVLFGCSADEFFDFAKFHPFAAVNVSRILEGEMFKMT 120

Query: 121 ISKPKNGNAQHSRVVHVVPLSSGFQPAIFRLRELYGVRS 158
           +SKPKNGNAQH R V V+PL SGFQPAI  LRELYGVRS
Sbjct: 121 LSKPKNGNAQHLRAVQVIPLRSGFQPAIVTLRELYGVRS 158

[Close]

BLAST of Lsi10G012310 vs. TrEMBL
Match: D7SNC5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0061g00510 PE=4 SV=1)

HSP 1 Score: 233.0 bits (593), Expect = 2.5e-58
Identity = 115/160 (71.88%), Postives = 131/160 (81.88%), Query Frame = 1


Query: 1   MENAKPITTMCAVIAMDHTSFCYRVCSICERTLPDKPSS----SLCKFCNFNAFNPGSSK 60
           ME+ KP T MC ++AMDHT+FCYRVCS CERTLPD  ++    SLC  CNFN+  P  SK
Sbjct: 1   MEDDKPWTLMCGLVAMDHTNFCYRVCSACERTLPDTATTNSTPSLCNVCNFNSSKP-PSK 60

Query: 61  RVFRLLMSIATDKKVQTVICFDRAARVLFGCSADEFFDFAKLHPFAAETVSEILEGEMFR 120
           R+FR+L+SIA+D KV  VICFDRAARVLFGCSADEFFDF KLHPFAA T  ++LEGEMFR
Sbjct: 61  RLFRVLVSIASDTKVFVVICFDRAARVLFGCSADEFFDFVKLHPFAAVTAGKVLEGEMFR 120

Query: 121 ITISKPKNGNAQHSRVVHVVPLSSGFQPAIFRLRELYGVR 157
           +T+SKPKNGNAQH RVV VVPL SGFQPAI  LRELYGV+
Sbjct: 121 MTLSKPKNGNAQHLRVVSVVPLRSGFQPAIETLRELYGVK 159

[Close]

BLAST of Lsi10G012310 vs. TrEMBL
Match: V4UEI1_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10029419mg PE=4 SV=1)

HSP 1 Score: 226.9 bits (577), Expect = 1.8e-56
Identity = 112/163 (68.71%), Postives = 131/163 (80.37%), Query Frame = 1


Query: 1   MENAKPITTMCAVIAMDHTSFCYRVCSICERTLPDKPSSSLCKFCNFNAFN-------PG 60
           ME  KP T MC ++ MD+++FCYRVCSICERTLPD P SSLCKFCNFN+ +         
Sbjct: 1   MEVDKPTTVMCTIVGMDYSNFCYRVCSICERTLPDDP-SSLCKFCNFNSNSDNASVSVSS 60

Query: 61  SSKRVFRLLMSIATDKKVQTVICFDRAARVLFGCSADEFFDFAKLHPFAAETVSEILEGE 120
           SSKR+FRLL+SIATD KV+ VICFDRAARVLFGCSADEF DFAK+HPFAA T S++L+GE
Sbjct: 61  SSKRLFRLLISIATDTKVKVVICFDRAARVLFGCSADEFVDFAKVHPFAAMTASKVLQGE 120

Query: 121 MFRITISKPKNGNAQHSRVVHVVPLSSGFQPAIFRLRELYGVR 157
           MF++T++KPKNGNAQH RV  V PLSS F+P I  LRE YGVR
Sbjct: 121 MFKMTLNKPKNGNAQHLRVATVFPLSSVFRPVIETLRERYGVR 162

[Close]

BLAST of Lsi10G012310 vs. TrEMBL
Match: W9S965_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_020624 PE=4 SV=1)

HSP 1 Score: 224.6 bits (571), Expect = 8.8e-56
Identity = 106/165 (64.24%), Postives = 131/165 (79.39%), Query Frame = 1


Query: 1   MENAKPITTMCAVIAMDHTSFCYRVCSICERTLPDKPSSSLCKFCNFNAFN--------- 60
           ME  KP T +C ++AMD T+FCYRVCS+CERTLPD P+ SLC FCN N+FN         
Sbjct: 1   MEIGKPTTMICTLLAMDQTNFCYRVCSVCERTLPDNPT-SLCNFCNLNSFNSRSSSSNSR 60

Query: 61  PGSSKRVFRLLMSIATDKKVQTVICFDRAARVLFGCSADEFFDFAKLHPFAAETVSEILE 120
             SSK +FR+LMS+A+D KV TVICFDRAA+VLFGC+ADEFFDFAKLHPF+A T ++ILE
Sbjct: 61  SSSSKLLFRILMSVASDTKVFTVICFDRAAKVLFGCTADEFFDFAKLHPFSAATTNKILE 120

Query: 121 GEMFRITISKPKNGNAQHSRVVHVVPLSSGFQPAIFRLRELYGVR 157
           GEM ++T+S+PKNGNAQH RV  +VPL +GF+PAI  L+E YG+R
Sbjct: 121 GEMIKVTLSRPKNGNAQHHRVSQIVPLRTGFRPAIETLKEFYGLR 164

[Close]

BLAST of Lsi10G012310 vs. TAIR10
Match: AT2G28105.1 (AT2G28105.1 Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Replication factor A, C-terminal (InterPro:IPR013955))

HSP 1 Score: 170.6 bits (431), Expect = 7.6e-43
Identity = 84/149 (56.38%), Postives = 106/149 (71.14%), Query Frame = 1


Query: 8   TTMCAVIAMDHTSFCYRVCSICERTLPDK----PSSSLCKFCNFNAFNPGSSKRVFRLLM 67
           T +C ++A+D T +CYRVCS C+R LP       SSS CKFC          K ++R+LM
Sbjct: 6   TVLCTLLAVDLTDYCYRVCSRCQRVLPSDNNGFASSSFCKFCKSK-----EPKLLYRILM 65

Query: 68  SIATDKKVQTVICFDRAARVLFGCSADEFFDFAKLHPFAAETVSEILEGEMFRITISKPK 127
           SIATD  V+TVICFDRAA VLFGCSADEFF F KL+P AA  V+++ +GEM R+T+++P+
Sbjct: 66  SIATDASVKTVICFDRAATVLFGCSADEFFHFTKLNPLAASMVNQVFDGEMLRMTLTRPQ 125

Query: 128 NGNAQHSRVVHVVPLSSGFQPAIFRLREL 153
           N NAQH RV  VVPL SG QPAI  LR++
Sbjct: 126 NRNAQHMRVASVVPLRSGVQPAIVTLRQI 149

[Close]

BLAST of Lsi10G012310 vs. NCBI nr
Match: gi|659130879|ref|XP_008465398.1| (PREDICTED: uncharacterized protein LOC103503028 [Cucumis melo])

HSP 1 Score: 288.5 bits (737), Expect = 7.1e-75
Identity = 143/159 (89.94%), Postives = 148/159 (93.08%), Query Frame = 1


Query: 1   MENAKPITTMCAVIAMDHTSFCYRVCSICERTLPDKPSSSLCKFCNFNAFNPG--SSKRV 60
           MEN KPITTMCAVIAMD+T+FCYRVCSICERTLP  PSSSLCKFCNFNAFNPG  SSKRV
Sbjct: 1   MENGKPITTMCAVIAMDYTNFCYRVCSICERTLPVNPSSSLCKFCNFNAFNPGSSSSKRV 60

Query: 61  FRLLMSIATDKKVQTVICFDRAARVLFGCSADEFFDFAKLHPFAAETVSEILEGEMFRIT 120
           FRLLMSIATDK+VQTVICFDR A+VLFGCSADEFFDFAKLHPFAAETVSEIL GEMFRIT
Sbjct: 61  FRLLMSIATDKEVQTVICFDRVAKVLFGCSADEFFDFAKLHPFAAETVSEILVGEMFRIT 120

Query: 121 ISKPKNGNAQHSRVVHVVPLSSGFQPAIFRLRELYGVRS 158
           ISKPKNGNAQHSRVV +VPLSS FQPAI RLRELYGV S
Sbjct: 121 ISKPKNGNAQHSRVVQIVPLSSCFQPAIIRLRELYGVNS 159

[Close]

BLAST of Lsi10G012310 vs. NCBI nr
Match: gi|778713308|ref|XP_011657020.1| (PREDICTED: uncharacterized protein LOC101220454 [Cucumis sativus])

HSP 1 Score: 284.6 bits (727), Expect = 1.0e-73
Identity = 143/159 (89.94%), Postives = 147/159 (92.45%), Query Frame = 1


Query: 1   MENAKPITTMCAVIAMDHTSFCYRVCSICERTLPDKPSSSLCKFCNFNAFNPG--SSKRV 60
           MEN KPITTMCAV+AMD+T+FCYRVCSICERTLP  PSS LCKFCNFNAFNPG  SSKRV
Sbjct: 1   MENGKPITTMCAVMAMDYTNFCYRVCSICERTLPVNPSS-LCKFCNFNAFNPGSSSSKRV 60

Query: 61  FRLLMSIATDKKVQTVICFDRAARVLFGCSADEFFDFAKLHPFAAETVSEILEGEMFRIT 120
           FRLLMSIATDKKVQTVICFDR ARVLFGCSADEFFDFAKLHPFAAETVSEILEGEM RIT
Sbjct: 61  FRLLMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKLHPFAAETVSEILEGEMLRIT 120

Query: 121 ISKPKNGNAQHSRVVHVVPLSSGFQPAIFRLRELYGVRS 158
           ISKPKNGNAQHSRVV +VPLSS FQPAI RLRELYGV S
Sbjct: 121 ISKPKNGNAQHSRVVQIVPLSSCFQPAIIRLRELYGVNS 158

[Close]

BLAST of Lsi10G012310 vs. NCBI nr
Match: gi|700191668|gb|KGN46872.1| (hypothetical protein Csa_6G147650 [Cucumis sativus])

HSP 1 Score: 281.2 bits (718), Expect = 1.1e-72
Identity = 141/156 (90.38%), Postives = 145/156 (92.95%), Query Frame = 1


Query: 1   MENAKPITTMCAVIAMDHTSFCYRVCSICERTLPDKPSSSLCKFCNFNAFNPG--SSKRV 60
           MEN KPITTMCAV+AMD+T+FCYRVCSICERTLP  PSS LCKFCNFNAFNPG  SSKRV
Sbjct: 1   MENGKPITTMCAVMAMDYTNFCYRVCSICERTLPVNPSS-LCKFCNFNAFNPGSSSSKRV 60

Query: 61  FRLLMSIATDKKVQTVICFDRAARVLFGCSADEFFDFAKLHPFAAETVSEILEGEMFRIT 120
           FRLLMSIATDKKVQTVICFDR ARVLFGCSADEFFDFAKLHPFAAETVSEILEGEM RIT
Sbjct: 61  FRLLMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKLHPFAAETVSEILEGEMLRIT 120

Query: 121 ISKPKNGNAQHSRVVHVVPLSSGFQPAIFRLRELYG 155
           ISKPKNGNAQHSRVV +VPLSS FQPAI RLRELYG
Sbjct: 121 ISKPKNGNAQHSRVVQIVPLSSCFQPAIIRLRELYG 155

[Close]

BLAST of Lsi10G012310 vs. NCBI nr
Match: gi|595830382|ref|XP_007206058.1| (hypothetical protein PRUPE_ppa012661mg [Prunus persica])

HSP 1 Score: 244.6 bits (623), Expect = 1.2e-61
Identity = 120/159 (75.47%), Postives = 133/159 (83.65%), Query Frame = 1


Query: 1   MENAKPITTMCAVIAMDHTSFCYRVCSICERTLPDKPSSSLCKFCNFNAFNP--GSSKRV 60
           ME  KP T +C V+A+DHT F YRVCS+CERTLPD P+S LCKFC+ NAFNP    SKR+
Sbjct: 1   MEAEKPTTMLCTVLAIDHTDFSYRVCSVCERTLPDNPTS-LCKFCSVNAFNPRFSRSKRL 60

Query: 61  FRLLMSIATDKKVQTVICFDRAARVLFGCSADEFFDFAKLHPFAAETVSEILEGEMFRIT 120
           FRLLMSIA+D KV TVICFDRAA+VLFGCSADEFFDFAK HPFAA  VS ILEGEMF++T
Sbjct: 61  FRLLMSIASDTKVFTVICFDRAAKVLFGCSADEFFDFAKFHPFAAVNVSRILEGEMFKMT 120

Query: 121 ISKPKNGNAQHSRVVHVVPLSSGFQPAIFRLRELYGVRS 158
           +SKPKNGNAQH R V V+PL SGFQPAI  LRELYGVRS
Sbjct: 121 LSKPKNGNAQHLRAVQVIPLRSGFQPAIVTLRELYGVRS 158

[Close]

BLAST of Lsi10G012310 vs. NCBI nr
Match: gi|645217568|ref|XP_008226427.1| (PREDICTED: uncharacterized protein LOC103326001 isoform X1 [Prunus mume])

HSP 1 Score: 236.1 bits (601), Expect = 4.2e-59
Identity = 118/159 (74.21%), Postives = 132/159 (83.02%), Query Frame = 1


Query: 1   MENAKPITTMCAVIAMDHTSFCYRVCSICERTLPDKPSSSLCKFCNFNAFNPG--SSKRV 60
           ME  KP T +C ++A+DHT F YRVCS+CERTLPD P+S LCKFC+ NAFNP    SKR+
Sbjct: 10  MEADKPTTMLCTLLAVDHTDFSYRVCSVCERTLPDNPTS-LCKFCSVNAFNPRFPRSKRL 69

Query: 61  FRLLMSIATDKKVQTVICFDRAARVLFGCSADEFFDFAKLHPFAAETVSEILEGEMFRIT 120
           FRLLMSIA+D KV TVICFDRAA+VLFGCSADEFFDFAK HPFAA  VS ILEGEMF++T
Sbjct: 70  FRLLMSIASDTKVFTVICFDRAAKVLFGCSADEFFDFAKFHPFAAVNVSRILEGEMFKMT 129

Query: 121 ISKPKNGNAQHSRVVHVVPLSSGFQPAIFRLRELYGVRS 158
           +SKPKNGNAQH R   V+PL SGFQPAI  LRELYGVRS
Sbjct: 130 LSKPKNGNAQHLR-AQVIPLRSGFQPAIVTLRELYGVRS 166

The following BLAST results are available for this feature:

BLAST of Lsi10G012310 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi10G012310 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KEN7_CUCSA	7.9e-73	90.38	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G147650 PE=4 SV=1	[more]
M5W0J2_PRUPE	8.2e-62	75.47	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012661mg PE=4 SV=1	[more]
D7SNC5_VITVI	2.5e-58	71.88	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0061g00510 PE=4 SV=...	[more]
V4UEI1_9ROSI	1.8e-56	68.71	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10029419mg PE=4 SV=1	[more]
W9S965_9ROSA	8.8e-56	64.24	Uncharacterized protein OS=Morus notabilis GN=L484_020624 PE=4 SV=1	[more]

BLAST of Lsi10G012310 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G28105.1	7.6e-43	56.38	Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Replication...	[more]

BLAST of Lsi10G012310 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659130879\|ref\|XP_008465398.1\|	7.1e-75	89.94	PREDICTED: uncharacterized protein LOC103503028 [Cucumis melo]	[more]
gi\|778713308\|ref\|XP_011657020.1\|	1.0e-73	89.94	PREDICTED: uncharacterized protein LOC101220454 [Cucumis sativus]	[more]
gi\|700191668\|gb\|KGN46872.1\|	1.1e-72	90.38	hypothetical protein Csa_6G147650 [Cucumis sativus]	[more]
gi\|595830382\|ref\|XP_007206058.1\|	1.2e-61	75.47	hypothetical protein PRUPE_ppa012661mg [Prunus persica]	[more]
gi\|645217568\|ref\|XP_008226427.1\|	4.2e-59	74.21	PREDICTED: uncharacterized protein LOC103326001 isoform X1 [Prunus mume]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR013955	Rep_factor-A_C
IPR012340	NA-bd_OB-fold

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi10G012310.1	Lsi10G012310.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012340	Nucleic acid-binding, OB-fold	GENE3D	G3DSA:2.40.50.140		coord: 17..113 score: 2.
IPR012340	Nucleic acid-binding, OB-fold	unknown	SSF50249	Nucleic acid-binding proteins	coord: 7..117 score: 6.0
IPR013955	Replication factor A, C-terminal	PFAM	PF08646	Rep_fac-A_C	coord: 8..111 score: 4.
None	No IPR available	PANTHER	PTHR23273	REPLICATION FACTOR A 1, RFA1	coord: 8..120 score: 2.6
None	No IPR available	PANTHER	PTHR23273:SF11	SUBFAMILY NOT NAMED	coord: 8..120 score: 2.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi10G012310	Csa6G147650	Cucumber (Chinese Long) v2	culsiB412
Lsi10G012310	CSPI06G11830	Wild cucumber (PI 183967)	cpilsiB415
Lsi10G012310	Cucsa.385780	Cucumber (Gy14) v1	cgylsiB624
Lsi10G012310	CmaCh20G005150	Cucurbita maxima (Rimu)	cmalsiB506
Lsi10G012310	CmoCh20G005480	Cucurbita moschata (Rifu)	cmolsiB490
Lsi10G012310	Cla008707	Watermelon (97103) v1	lsiwmB078
Lsi10G012310	MELO3C026944	Melon (DHL92) v3.5.1	lsimeB055
Lsi10G012310	ClCG02G021490	Watermelon (Charleston Gray)	lsiwcgB054
Lsi10G012310	MELO3C026944.2	Melon (DHL92) v3.6.1	lsimedB055
Lsi10G012310	Cla97C02G047580	Watermelon (97103) v2	lsiwmbB052
Lsi10G012310	Bhi10G000111	Wax gourd	lsiwgoB070
Lsi10G012310	Cp4.1LG16g05040	Cucurbita pepo (Zucchini)	cpelsiB219
Lsi10G012310	CsGy6G011940	Cucumber (Gy14) v2	cgyblsiB377
Lsi10G012310	Carg03211	Silver-seed gourd	carlsiB303
Lsi10G012310	CsaV3_6G014270	Cucumber (Chinese Long) v3	cuclsiB439

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi10G012310	Cucurbita pepo (Zucchini)	cpelsiB389
Lsi10G012310	Cucurbita pepo (Zucchini)	cpelsiB487
Lsi10G012310	Cucurbita pepo (Zucchini)	cpelsiB602
Lsi10G012310	Wild cucumber (PI 183967)	cpilsiB160
Lsi10G012310	Cucumber (Chinese Long) v2	culsiB161
Lsi10G012310	Melon (DHL92) v3.5.1	lsimeB070
Lsi10G012310	Watermelon (Charleston Gray)	lsiwcgB037
Lsi10G012310	Watermelon (97103) v1	lsiwmB048
Lsi10G012310	Watermelon (97103) v1	lsiwmB064
Lsi10G012310	Cucumber (Gy14) v2	cgyblsiB146
Lsi10G012310	Cucumber (Gy14) v2	cgyblsiB384
Lsi10G012310	Melon (DHL92) v3.6.1	lsimedB072
Lsi10G012310	Melon (DHL92) v3.6.1	lsimedB078
Lsi10G012310	Silver-seed gourd	carlsiB222
Lsi10G012310	Silver-seed gourd	carlsiB838
Lsi10G012310	Cucumber (Chinese Long) v3	cuclsiB177
Lsi10G012310	Cucumber (Chinese Long) v3	cuclsiB444
Lsi10G012310	Watermelon (97103) v2	lsiwmbB040
Lsi10G012310	Watermelon (97103) v2	lsiwmbB067
Lsi10G012310	Wax gourd	lsiwgoB059
Lsi10G012310	Wax gourd	lsiwgoB087
Lsi10G012310	Wax gourd	lsiwgoB095
Lsi10G012310	Bottle gourd (USVL1VR-Ls)	lsilsiB040
Lsi10G012310	Bottle gourd (USVL1VR-Ls)	lsilsiB025
Lsi10G012310	Cucumber (Gy14) v1	cgylsiB493
Lsi10G012310	Cucurbita maxima (Rimu)	cmalsiB227
Lsi10G012310	Cucurbita maxima (Rimu)	cmalsiB540
Lsi10G012310	Cucurbita maxima (Rimu)	cmalsiB744
Lsi10G012310	Cucurbita moschata (Rifu)	cmolsiB185
Lsi10G012310	Cucurbita moschata (Rifu)	cmolsiB215
Lsi10G012310	Cucurbita moschata (Rifu)	cmolsiB525
Lsi10G012310	Cucurbita moschata (Rifu)	cmolsiB736