CmaCh20G005150 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh20G005150
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Coffea canephora DH200=94 genomic scaffold, scaffold_24
Location	Cma_Chr20 : 2495516 .. 2498403 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AATCTGAACAGTGTTTTGTGTAGCGGCGGAGCGCCGCGTCTTTTCATTTTCCAGGAACGGAGGCAACCTCCATCAGAGGAGTAATGGAAAACGATAAGCGAATAACAACAATGTGCGCAGTGATAGCCATGGATCACACCAGTTTCTGCTACAGGGTTTGTTCAATCTGTGAGAGGACACTCCCTAGTAACCCCCCTTTTTCTCTCTGCAAATTCTGCAACTTCAACGCCTTCAATCCCGGTTCCTCCTCCTCCAAGCGTGTCTTTCGTATACTTGTGAGTATCTCCGCTTTTCTACTTGAGAATTTATTTTCAGAATGTGTGGAAATTTCATACGATGTTCTTGTCGTTGGAATTCCATTTGAAATTTGAGTGGGAAATGTTGGGGTTATGCTTATCTTTGTGTATCGACTCATTGGGTTTGAGTATGTGCATGCATTGCATTTTTTATATTGTGGCTCTGATTAGGGTTCCTATATTTCCATTGTTTTTTGGCAGATGTCAATTGCTACGGATAAGAAAGTACAAACTGTTATATGCTTTGATAGGGTTGCTAGGGTTCTGTTTGGTTGCTCTGCTGATGAGTTTTTCGACTTTGCTAAGCTACATCCTTTTGCTGGTAAATTCCCTTTGTATCTGTGAGATTCTCTTTGAACGGACATAAACGATTTAGAACGAGAGGCATTTCATTAAACAGCCTAGAGAAAACAACCTAGAAGCGGAGTCCCTTAATGATCATCAGAAGTTGTCTGAAGATTACGTTACAAATACAATTTGTGGGAGAATTTTCAATTGTTTTCCGTAAAATCTTGCTTAATCTTCGTTCATCCAAGCTGTTCTGTTTCCTTATGGTCTGATTACTGGTGGAAGTTTCATTTCGTGATGCAGCTGAAGCTGTAAGTGAAATTCTTGAGGGAGAGATGTTTAGAATGACGATCTCTAAACCAAAGAATGGCAATGCACAACACTCGAGAGTTGTGCAACTTGTTCCTCTAAGTTCAGGTTTTCAACCAGCAATTCTGAGATTGAGGGAATTGTATGGGTAAGAGGCTGCTGTTAATTTTCCTCCCTTTGTCATTAGTTCTTCTTATTATGTGGGTTTCTACATGCTTTTCTTTTTCTTGAAGGACTACCTTCTCGGGTATGGGTGGATGTTTAGGCAGGCAGATATATAGCTCCACAATCATTTAGCTGAATTTACTTGCTGTTGATTAGTATAATTATTTTGATTGTCACGAAGGTTCATTATGCACTGAAGATCATTATTTCAGATATTGGGAAGTTGAGATACATCTATATTTGTTTATAGGGAAGGAGGGGGAAGTTAAGTGAGCTAGTTCCTGGTAGGAGTTCTAAGAGAGAAATGTTGTGGTTTTGTTTATTTTGTAGGGTTGTATTTATAGACAAGGACGGGAGTGAAGGGAGTTGGTTCCTTGTGGGTAGAAATAAGATTTATTGAAGTGGTTTGGGGATTTCATATTTTAATGTTGAAACCATAACAACTTGATATAGTTAAAAACTTAGAGTTGTGCTCCAACTTATGAAATATTCTAGTGTCTTCTACCTGTTTAATTGTAAACATCCCACGAAACATGTAACAGCTCAAGCCCACAACTAGTAGATAGTCTTTTTTGAGGCTTTCCCTTTTTAGTTTTCCCTCTAGGTTTTAAAACGTGTCTGCTAGAGAGAGGTTTCCACATGCTTATAAGGAATGCTTCAATCCCCTTTCCAACCGATGTAACATCTCACAATTCAAAGTTTTCCACCCCTTATAAAGAATGTTTCATTCCCCTCTCCAACAGATGTGCGATCTCACAATCCACCTCTCTTGGGGGCCCAACGTCTTCAATTGCACACCACCCGGTGTCTAGCTCTGATACCATTTGTAACGGTCCAAACCCACCGCTAGTAGTTATTGTCTACTTACAAGAAAAATACATGAAAAAGCATCTAATTCATAAATGTCCTAAACCAGTCCGAGACTCCTTAAATTTTTTTCTTTCCATCCAATCTCCATTCTCTCTTTGTCAGATGTTATTACAAATTGAGCTAAATGCTTGGGTGAAATTGTCCCTTCAGCTTCTTAGCCTCTTAATTTACTTATGTACAGTGCCGAACATCTCCTCTTCCCACCTTTTGACGTTGTAGCAGCCACCAGACAGAATCTGTTCCTTTTGATGTTCTCTTGTCTGTATCCCTTGTTCTGACTTCTGACGGTTTAACTTCAAAACTTACTAGATATTCCTCCAGTGCATACTGATGTAGCTGATGTTTTTTATGAGTTCTGTAAGCAAGAAAAGTTGGGTTGAAATTACAAAAGCTACTTGAAAGAGAATTGAAATTTCTCCAGTCCGATGGATTTTTTTGTCTTGTTTTTGGCTGGCCAAGGTATGATTGCCTAGTGGCTCTATATATTTTTAGTGAATTGACTGCTTAATTTTGTTTGCAGGCTAGCCAAGGTATCATCTGCTGTTGGTAATGGACAAAACATGCATAGCTCCAAAAAGCAAAAGAGATGTGATGTGGGCACCTCAAAAACTACCTAATCCTATCCCTTTCTTCAACTGTTTGTATTTTTGCTATCATTTAGACTTTGTTATTTGATATGATTTTTTGTGCAGTGGAGAGGATTTTAACTAGAAAGGAAGAATGAAGTAGATTCTATTTCTTTCCTTTGGGACATGACACATGACACATGACAAGATAGCTTTCTTGGGAATGGAACAGTTGGATCATTGTTCAATAGTGTGATTGTAGCCGGGATAAGCAGGCATAAACTTCTGTATAGCGCCCTAAAAGTACGACTTGCCTCAAATTTGTAAAAGAATACTTGCAACATAACTGCTGAACAAGACTATAAAAGGCAACTCCTGTAAGTATATATCAATC

mRNA sequence

AATCTGAACAGTGTTTTGTGTAGCGGCGGAGCGCCGCGTCTTTTCATTTTCCAGGAACGGAGGCAACCTCCATCAGAGGAGTAATGGAAAACGATAAGCGAATAACAACAATGTGCGCAGTGATAGCCATGGATCACACCAGTTTCTGCTACAGGGTTTGTTCAATCTGTGAGAGGACACTCCCTAGTAACCCCCCTTTTTCTCTCTGCAAATTCTGCAACTTCAACGCCTTCAATCCCGGTTCCTCCTCCTCCAAGCGTGTCTTTCGTATACTTATGTCAATTGCTACGGATAAGAAAGTACAAACTGTTATATGCTTTGATAGGGTTGCTAGGGTTCTGTTTGGTTGCTCTGCTGATGAGTTTTTCGACTTTGCTAAGCTACATCCTTTTGCTGCTGAAGCTGTAAGTGAAATTCTTGAGGGAGAGATGTTTAGAATGACGATCTCTAAACCAAAGAATGGCAATGCACAACACTCGAGAGTTGTGCAACTTGTTCCTCTAAGTTCAGGTTTTCAACCAGCAATTCTGAGATTGAGGGAATTGTATGGGCTAGCCAAGGTATCATCTGCTGTTGGTAATGGACAAAACATGCATAGCTCCAAAAAGCAAAAGAGATGTGATTGGAGAGGATTTTAACTAGAAAGGAAGAATGAAGTAGATTCTATTTCTTTCCTTTGGGACATGACACATGACACATGACAAGATAGCTTTCTTGGGAATGGAACAGTTGGATCATTGTTCAATAGTGTGATTGTAGCCGGGATAAGCAGGCATAAACTTCTGTATAGCGCCCTAAAAGTACGACTTGCCTCAAATTTGTAAAAGAATACTTGCAACATAACTGCTGAACAAGACTATAAAAGGCAACTCCTGTAAGTATATATCAATC

Coding sequence (CDS)

ATGGAAAACGATAAGCGAATAACAACAATGTGCGCAGTGATAGCCATGGATCACACCAGTTTCTGCTACAGGGTTTGTTCAATCTGTGAGAGGACACTCCCTAGTAACCCCCCTTTTTCTCTCTGCAAATTCTGCAACTTCAACGCCTTCAATCCCGGTTCCTCCTCCTCCAAGCGTGTCTTTCGTATACTTATGTCAATTGCTACGGATAAGAAAGTACAAACTGTTATATGCTTTGATAGGGTTGCTAGGGTTCTGTTTGGTTGCTCTGCTGATGAGTTTTTCGACTTTGCTAAGCTACATCCTTTTGCTGCTGAAGCTGTAAGTGAAATTCTTGAGGGAGAGATGTTTAGAATGACGATCTCTAAACCAAAGAATGGCAATGCACAACACTCGAGAGTTGTGCAACTTGTTCCTCTAAGTTCAGGTTTTCAACCAGCAATTCTGAGATTGAGGGAATTGTATGGGCTAGCCAAGGTATCATCTGCTGTTGGTAATGGACAAAACATGCATAGCTCCAAAAAGCAAAAGAGATGTGATTGGAGAGGATTTTAA

Protein sequence

MENDKRITTMCAVIAMDHTSFCYRVCSICERTLPSNPPFSLCKFCNFNAFNPGSSSSKRVFRILMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKLHPFAAEAVSEILEGEMFRMTISKPKNGNAQHSRVVQLVPLSSGFQPAILRLRELYGLAKVSSAVGNGQNMHSSKKQKRCDWRGF

Homology

[Close]

BLAST of CmaCh20G005150 vs. TrEMBL
Match: A0A0A0KEN7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G147650 PE=4 SV=1)

HSP 1 Score: 284.6 bits (727), Expect = 8.3e-74
Identity = 141/156 (90.38%), Postives = 148/156 (94.87%), Query Frame = 1


Query: 1   MENDKRITTMCAVIAMDHTSFCYRVCSICERTLPSNPPFSLCKFCNFNAFNPGSSSSKRV 60
           MEN K ITTMCAV+AMD+T+FCYRVCSICERTLP NP  SLCKFCNFNAFNPGSSSSKRV
Sbjct: 1   MENGKPITTMCAVMAMDYTNFCYRVCSICERTLPVNPS-SLCKFCNFNAFNPGSSSSKRV 60

Query: 61  FRILMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKLHPFAAEAVSEILEGEMFRMT 120
           FR+LMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKLHPFAAE VSEILEGEM R+T
Sbjct: 61  FRLLMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKLHPFAAETVSEILEGEMLRIT 120

Query: 121 ISKPKNGNAQHSRVVQLVPLSSGFQPAILRLRELYG 157
           ISKPKNGNAQHSRVVQ+VPLSS FQPAI+RLRELYG
Sbjct: 121 ISKPKNGNAQHSRVVQIVPLSSCFQPAIIRLRELYG 155

[Close]

BLAST of CmaCh20G005150 vs. TrEMBL
Match: M5W0J2_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012661mg PE=4 SV=1)

HSP 1 Score: 240.0 bits (611), Expect = 2.3e-60
Identity = 116/157 (73.89%), Postives = 132/157 (84.08%), Query Frame = 1


Query: 1   MENDKRITTMCAVIAMDHTSFCYRVCSICERTLPSNPPFSLCKFCNFNAFNPGSSSSKRV 60
           ME +K  T +C V+A+DHT F YRVCS+CERTLP NP  SLCKFC+ NAFNP  S SKR+
Sbjct: 1   MEAEKPTTMLCTVLAIDHTDFSYRVCSVCERTLPDNPT-SLCKFCSVNAFNPRFSRSKRL 60

Query: 61  FRILMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKLHPFAAEAVSEILEGEMFRMT 120
           FR+LMSIA+D KV TVICFDR A+VLFGCSADEFFDFAK HPFAA  VS ILEGEMF+MT
Sbjct: 61  FRLLMSIASDTKVFTVICFDRAAKVLFGCSADEFFDFAKFHPFAAVNVSRILEGEMFKMT 120

Query: 121 ISKPKNGNAQHSRVVQLVPLSSGFQPAILRLRELYGL 158
           +SKPKNGNAQH R VQ++PL SGFQPAI+ LRELYG+
Sbjct: 121 LSKPKNGNAQHLRAVQVIPLRSGFQPAIVTLRELYGV 156

[Close]

BLAST of CmaCh20G005150 vs. TrEMBL
Match: D7SNC5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0061g00510 PE=4 SV=1)

HSP 1 Score: 224.9 bits (572), Expect = 7.8e-56
Identity = 112/163 (68.71%), Postives = 128/163 (78.53%), Query Frame = 1


Query: 1   MENDKRITTMCAVIAMDHTSFCYRVCSICERTLP----SNPPFSLCKFCNFNAFNPGSSS 60
           ME+DK  T MC ++AMDHT+FCYRVCS CERTLP    +N   SLC  CNFN+  P    
Sbjct: 1   MEDDKPWTLMCGLVAMDHTNFCYRVCSACERTLPDTATTNSTPSLCNVCNFNSSKP---P 60

Query: 61  SKRVFRILMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKLHPFAAEAVSEILEGEM 120
           SKR+FR+L+SIA+D KV  VICFDR ARVLFGCSADEFFDF KLHPFAA    ++LEGEM
Sbjct: 61  SKRLFRVLVSIASDTKVFVVICFDRAARVLFGCSADEFFDFVKLHPFAAVTAGKVLEGEM 120

Query: 121 FRMTISKPKNGNAQHSRVVQLVPLSSGFQPAILRLRELYGLAK 160
           FRMT+SKPKNGNAQH RVV +VPL SGFQPAI  LRELYG+ +
Sbjct: 121 FRMTLSKPKNGNAQHLRVVSVVPLRSGFQPAIETLRELYGVKR 160

[Close]

BLAST of CmaCh20G005150 vs. TrEMBL
Match: W9S965_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_020624 PE=4 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 7.3e-54
Identity = 107/164 (65.24%), Postives = 129/164 (78.66%), Query Frame = 1


Query: 1   MENDKRITTMCAVIAMDHTSFCYRVCSICERTLPSNPPFSLCKFCNFNAFNPGSSSS--- 60
           ME  K  T +C ++AMD T+FCYRVCS+CERTLP NP  SLC FCN N+FN  SSSS   
Sbjct: 1   MEIGKPTTMICTLLAMDQTNFCYRVCSVCERTLPDNPT-SLCNFCNLNSFNSRSSSSNSR 60

Query: 61  ----KRVFRILMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKLHPFAAEAVSEILE 120
               K +FRILMS+A+D KV TVICFDR A+VLFGC+ADEFFDFAKLHPF+A   ++ILE
Sbjct: 61  SSSSKLLFRILMSVASDTKVFTVICFDRAAKVLFGCTADEFFDFAKLHPFSAATTNKILE 120

Query: 121 GEMFRMTISKPKNGNAQHSRVVQLVPLSSGFQPAILRLRELYGL 158
           GEM ++T+S+PKNGNAQH RV Q+VPL +GF+PAI  L+E YGL
Sbjct: 121 GEMIKVTLSRPKNGNAQHHRVSQIVPLRTGFRPAIETLKEFYGL 163

[Close]

BLAST of CmaCh20G005150 vs. TrEMBL
Match: V4UEI1_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10029419mg PE=4 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 7.3e-54
Identity = 107/162 (66.05%), Postives = 129/162 (79.63%), Query Frame = 1


Query: 1   MENDKRITTMCAVIAMDHTSFCYRVCSICERTLPSNPPFSLCKFCNFNAFNPG-----SS 60
           ME DK  T MC ++ MD+++FCYRVCSICERTLP +P  SLCKFCNFN+ +       SS
Sbjct: 1   MEVDKPTTVMCTIVGMDYSNFCYRVCSICERTLPDDPS-SLCKFCNFNSNSDNASVSVSS 60

Query: 61  SSKRVFRILMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKLHPFAAEAVSEILEGE 120
           SSKR+FR+L+SIATD KV+ VICFDR ARVLFGCSADEF DFAK+HPFAA   S++L+GE
Sbjct: 61  SSKRLFRLLISIATDTKVKVVICFDRAARVLFGCSADEFVDFAKVHPFAAMTASKVLQGE 120

Query: 121 MFRMTISKPKNGNAQHSRVVQLVPLSSGFQPAILRLRELYGL 158
           MF+MT++KPKNGNAQH RV  + PLSS F+P I  LRE YG+
Sbjct: 121 MFKMTLNKPKNGNAQHLRVATVFPLSSVFRPVIETLRERYGV 161

[Close]

BLAST of CmaCh20G005150 vs. TAIR10
Match: AT2G28105.1 (AT2G28105.1 Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Replication factor A, C-terminal (InterPro:IPR013955))

HSP 1 Score: 169.9 bits (429), Expect = 1.5e-42
Identity = 84/151 (55.63%), Postives = 107/151 (70.86%), Query Frame = 1


Query: 8   TTMCAVIAMDHTSFCYRVCSICERTLPSN----PPFSLCKFCNFNAFNPGSSSSKRVFRI 67
           T +C ++A+D T +CYRVCS C+R LPS+       S CKFC        S   K ++RI
Sbjct: 6   TVLCTLLAVDLTDYCYRVCSRCQRVLPSDNNGFASSSFCKFCK-------SKEPKLLYRI 65

Query: 68  LMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKLHPFAAEAVSEILEGEMFRMTISK 127
           LMSIATD  V+TVICFDR A VLFGCSADEFF F KL+P AA  V+++ +GEM RMT+++
Sbjct: 66  LMSIATDASVKTVICFDRAATVLFGCSADEFFHFTKLNPLAASMVNQVFDGEMLRMTLTR 125

Query: 128 PKNGNAQHSRVVQLVPLSSGFQPAILRLREL 155
           P+N NAQH RV  +VPL SG QPAI+ LR++
Sbjct: 126 PQNRNAQHMRVASVVPLRSGVQPAIVTLRQI 149

[Close]

BLAST of CmaCh20G005150 vs. NCBI nr
Match: gi|659130879|ref|XP_008465398.1| (PREDICTED: uncharacterized protein LOC103503028 [Cucumis melo])

HSP 1 Score: 287.0 bits (733), Expect = 2.4e-74
Identity = 140/157 (89.17%), Postives = 149/157 (94.90%), Query Frame = 1


Query: 1   MENDKRITTMCAVIAMDHTSFCYRVCSICERTLPSNPPFSLCKFCNFNAFNPGSSSSKRV 60
           MEN K ITTMCAVIAMD+T+FCYRVCSICERTLP NP  SLCKFCNFNAFNPGSSSSKRV
Sbjct: 1   MENGKPITTMCAVIAMDYTNFCYRVCSICERTLPVNPSSSLCKFCNFNAFNPGSSSSKRV 60

Query: 61  FRILMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKLHPFAAEAVSEILEGEMFRMT 120
           FR+LMSIATDK+VQTVICFDRVA+VLFGCSADEFFDFAKLHPFAAE VSEIL GEMFR+T
Sbjct: 61  FRLLMSIATDKEVQTVICFDRVAKVLFGCSADEFFDFAKLHPFAAETVSEILVGEMFRIT 120

Query: 121 ISKPKNGNAQHSRVVQLVPLSSGFQPAILRLRELYGL 158
           ISKPKNGNAQHSRVVQ+VPLSS FQPAI+RLRELYG+
Sbjct: 121 ISKPKNGNAQHSRVVQIVPLSSCFQPAIIRLRELYGV 157

[Close]

BLAST of CmaCh20G005150 vs. NCBI nr
Match: gi|778713308|ref|XP_011657020.1| (PREDICTED: uncharacterized protein LOC101220454 [Cucumis sativus])

HSP 1 Score: 285.0 bits (728), Expect = 9.1e-74
Identity = 141/157 (89.81%), Postives = 149/157 (94.90%), Query Frame = 1


Query: 1   MENDKRITTMCAVIAMDHTSFCYRVCSICERTLPSNPPFSLCKFCNFNAFNPGSSSSKRV 60
           MEN K ITTMCAV+AMD+T+FCYRVCSICERTLP NP  SLCKFCNFNAFNPGSSSSKRV
Sbjct: 1   MENGKPITTMCAVMAMDYTNFCYRVCSICERTLPVNPS-SLCKFCNFNAFNPGSSSSKRV 60

Query: 61  FRILMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKLHPFAAEAVSEILEGEMFRMT 120
           FR+LMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKLHPFAAE VSEILEGEM R+T
Sbjct: 61  FRLLMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKLHPFAAETVSEILEGEMLRIT 120

Query: 121 ISKPKNGNAQHSRVVQLVPLSSGFQPAILRLRELYGL 158
           ISKPKNGNAQHSRVVQ+VPLSS FQPAI+RLRELYG+
Sbjct: 121 ISKPKNGNAQHSRVVQIVPLSSCFQPAIIRLRELYGV 156

[Close]

BLAST of CmaCh20G005150 vs. NCBI nr
Match: gi|700191668|gb|KGN46872.1| (hypothetical protein Csa_6G147650 [Cucumis sativus])

HSP 1 Score: 284.6 bits (727), Expect = 1.2e-73
Identity = 141/156 (90.38%), Postives = 148/156 (94.87%), Query Frame = 1


Query: 1   MENDKRITTMCAVIAMDHTSFCYRVCSICERTLPSNPPFSLCKFCNFNAFNPGSSSSKRV 60
           MEN K ITTMCAV+AMD+T+FCYRVCSICERTLP NP  SLCKFCNFNAFNPGSSSSKRV
Sbjct: 1   MENGKPITTMCAVMAMDYTNFCYRVCSICERTLPVNPS-SLCKFCNFNAFNPGSSSSKRV 60

Query: 61  FRILMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKLHPFAAEAVSEILEGEMFRMT 120
           FR+LMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKLHPFAAE VSEILEGEM R+T
Sbjct: 61  FRLLMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKLHPFAAETVSEILEGEMLRIT 120

Query: 121 ISKPKNGNAQHSRVVQLVPLSSGFQPAILRLRELYG 157
           ISKPKNGNAQHSRVVQ+VPLSS FQPAI+RLRELYG
Sbjct: 121 ISKPKNGNAQHSRVVQIVPLSSCFQPAIIRLRELYG 155

[Close]

BLAST of CmaCh20G005150 vs. NCBI nr
Match: gi|595830382|ref|XP_007206058.1| (hypothetical protein PRUPE_ppa012661mg [Prunus persica])

HSP 1 Score: 240.0 bits (611), Expect = 3.4e-60
Identity = 116/157 (73.89%), Postives = 132/157 (84.08%), Query Frame = 1


Query: 1   MENDKRITTMCAVIAMDHTSFCYRVCSICERTLPSNPPFSLCKFCNFNAFNPGSSSSKRV 60
           ME +K  T +C V+A+DHT F YRVCS+CERTLP NP  SLCKFC+ NAFNP  S SKR+
Sbjct: 1   MEAEKPTTMLCTVLAIDHTDFSYRVCSVCERTLPDNPT-SLCKFCSVNAFNPRFSRSKRL 60

Query: 61  FRILMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKLHPFAAEAVSEILEGEMFRMT 120
           FR+LMSIA+D KV TVICFDR A+VLFGCSADEFFDFAK HPFAA  VS ILEGEMF+MT
Sbjct: 61  FRLLMSIASDTKVFTVICFDRAAKVLFGCSADEFFDFAKFHPFAAVNVSRILEGEMFKMT 120

Query: 121 ISKPKNGNAQHSRVVQLVPLSSGFQPAILRLRELYGL 158
           +SKPKNGNAQH R VQ++PL SGFQPAI+ LRELYG+
Sbjct: 121 LSKPKNGNAQHLRAVQVIPLRSGFQPAIVTLRELYGV 156

[Close]

BLAST of CmaCh20G005150 vs. NCBI nr
Match: gi|720036020|ref|XP_010267213.1| (PREDICTED: uncharacterized protein LOC104604530 [Nelumbo nucifera])

HSP 1 Score: 234.2 bits (596), Expect = 1.8e-58
Identity = 111/163 (68.10%), Postives = 134/163 (82.21%), Query Frame = 1


Query: 1   MENDKRITTMCAVIAMDHTSFCYRVCSICERTLPSNPPFSLCKFCNFNAFNPGSSSSKRV 60
           ME++K  T +C V+AMDHTSFCYRVCS+CERTLP N   +LCK C+FN FNPGSSSSKR+
Sbjct: 1   MEDEKPSTVICTVVAMDHTSFCYRVCSVCERTLPENSTPALCKSCDFNVFNPGSSSSKRL 60

Query: 61  FRILMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKLHPFAAEAVSEILEGEMFRMT 120
           +R+L S+ATD+KV  VICFDR ARVLFGCSADEFFDFAKL+PFA     ++LEGEMFRMT
Sbjct: 61  YRVLCSVATDEKVFVVICFDRAARVLFGCSADEFFDFAKLNPFAGVTAGKVLEGEMFRMT 120

Query: 121 ISKPKNGNAQHSRVVQLVPLSSGFQPAILRLRELYGL-AKVSS 163
           +SKP+NGNA+H RV  +VPL S F+PAI  L+ LYG+ A +SS
Sbjct: 121 LSKPRNGNARHLRVTSVVPLRSNFRPAIETLKSLYGVGAGISS 163

The following BLAST results are available for this feature:

BLAST of CmaCh20G005150 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh20G005150 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KEN7_CUCSA	8.3e-74	90.38	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G147650 PE=4 SV=1	[more]
M5W0J2_PRUPE	2.3e-60	73.89	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012661mg PE=4 SV=1	[more]
D7SNC5_VITVI	7.8e-56	68.71	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0061g00510 PE=4 SV=...	[more]
W9S965_9ROSA	7.3e-54	65.24	Uncharacterized protein OS=Morus notabilis GN=L484_020624 PE=4 SV=1	[more]
V4UEI1_9ROSI	7.3e-54	66.05	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10029419mg PE=4 SV=1	[more]

BLAST of CmaCh20G005150 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G28105.1	1.5e-42	55.63	Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Replication...	[more]

BLAST of CmaCh20G005150 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659130879\|ref\|XP_008465398.1\|	2.4e-74	89.17	PREDICTED: uncharacterized protein LOC103503028 [Cucumis melo]	[more]
gi\|778713308\|ref\|XP_011657020.1\|	9.1e-74	89.81	PREDICTED: uncharacterized protein LOC101220454 [Cucumis sativus]	[more]
gi\|700191668\|gb\|KGN46872.1\|	1.2e-73	90.38	hypothetical protein Csa_6G147650 [Cucumis sativus]	[more]
gi\|595830382\|ref\|XP_007206058.1\|	3.4e-60	73.89	hypothetical protein PRUPE_ppa012661mg [Prunus persica]	[more]
gi\|720036020\|ref\|XP_010267213.1\|	1.8e-58	68.10	PREDICTED: uncharacterized protein LOC104604530 [Nelumbo nucifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR012340	NA-bd_OB-fold

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh20G005150.1	CmaCh20G005150.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012340	Nucleic acid-binding, OB-fold	GENE3D	G3DSA:2.40.50.140		coord: 17..120 score: 3.
IPR012340	Nucleic acid-binding, OB-fold	unknown	SSF50249	Nucleic acid-binding proteins	coord: 3..120 score: 2.74
None	No IPR available	PANTHER	PTHR23273	REPLICATION FACTOR A 1, RFA1	coord: 8..122 score: 5.0
None	No IPR available	PANTHER	PTHR23273:SF11	SUBFAMILY NOT NAMED	coord: 8..122 score: 5.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh20G005150	Cucsa.385780	Cucumber (Gy14) v1	cgycmaB1065
CmaCh20G005150	Cla008707	Watermelon (97103) v1	cmawmB524
CmaCh20G005150	Csa6G147650	Cucumber (Chinese Long) v2	cmacuB554
CmaCh20G005150	MELO3C026944	Melon (DHL92) v3.5.1	cmameB489
CmaCh20G005150	ClCG02G021490	Watermelon (Charleston Gray)	cmawcgB481
CmaCh20G005150	CSPI06G11830	Wild cucumber (PI 183967)	cmacpiB560
CmaCh20G005150	CmoCh20G005480	Cucurbita moschata (Rifu)	cmacmoB550
CmaCh20G005150	Lsi10G012310	Bottle gourd (USVL1VR-Ls)	cmalsiB506
CmaCh20G005150	Cp4.1LG16g05040	Cucurbita pepo (Zucchini)	cmacpeB564
CmaCh20G005150	MELO3C026944.2	Melon (DHL92) v3.6.1	cmamedB568
CmaCh20G005150	CsaV3_6G014270	Cucumber (Chinese Long) v3	cmacucB0666
CmaCh20G005150	Cla97C02G047580	Watermelon (97103) v2	cmawmbB568
CmaCh20G005150	Bhi10G000111	Wax gourd	cmawgoB0697
CmaCh20G005150	CsGy6G011940	Cucumber (Gy14) v2	cgybcmaB790
CmaCh20G005150	Carg03211	Silver-seed gourd	carcmaB0473

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh20G005150	Melon (DHL92) v3.5.1	cmameB520
CmaCh20G005150	Watermelon (Charleston Gray)	cmawcgB476
CmaCh20G005150	Watermelon (Charleston Gray)	cmawcgB506
CmaCh20G005150	Watermelon (97103) v1	cmawmB513
CmaCh20G005150	Watermelon (97103) v1	cmawmB523
CmaCh20G005150	Cucurbita pepo (Zucchini)	cmacpeB582
CmaCh20G005150	Cucurbita pepo (Zucchini)	cmacpeB594
CmaCh20G005150	Bottle gourd (USVL1VR-Ls)	cmalsiB518
CmaCh20G005150	Bottle gourd (USVL1VR-Ls)	cmalsiB524
CmaCh20G005150	Cucumber (Gy14) v2	cgybcmaB388
CmaCh20G005150	Cucumber (Gy14) v2	cgybcmaB795
CmaCh20G005150	Melon (DHL92) v3.6.1	cmamedB597
CmaCh20G005150	Silver-seed gourd	carcmaB1266
CmaCh20G005150	Cucumber (Chinese Long) v3	cmacucB0656
CmaCh20G005150	Cucumber (Chinese Long) v3	cmacucB0672
CmaCh20G005150	Watermelon (97103) v2	cmawmbB565
CmaCh20G005150	Watermelon (97103) v2	cmawmbB594
CmaCh20G005150	Wax gourd	cmawgoB0704
CmaCh20G005150	Wax gourd	cmawgoB0674
CmaCh20G005150	Cucurbita maxima (Rimu)	cmacmaB261
CmaCh20G005150	Cucurbita maxima (Rimu)	cmacmaB479
CmaCh20G005150	Cucurbita maxima (Rimu)	cmacmaB490
CmaCh20G005150	Cucurbita maxima (Rimu)	cmacmaB493
CmaCh20G005150	Cucumber (Gy14) v1	cgycmaB0842
CmaCh20G005150	Cucurbita moschata (Rifu)	cmacmoB544
CmaCh20G005150	Cucurbita moschata (Rifu)	cmacmoB563
CmaCh20G005150	Cucurbita moschata (Rifu)	cmacmoB569
CmaCh20G005150	Wild cucumber (PI 183967)	cmacpiB551
CmaCh20G005150	Cucumber (Chinese Long) v2	cmacuB547
CmaCh20G005150	Cucumber (Chinese Long) v2	cmacuB561