Lsi10G011430 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi10G011430
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionProtein FAM210B
Locationchr10 : 15746748 .. 15748668 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GGGTAACATTTTCCTGTTATAAACTGTGTGAAGAACAATGGTGGTGACGACAGACGATTAAGCTTGAAGCAAATATCTGGCTTACAACGCTTCACATAAATTTCCCTTTCTCTTTTGATTTTGTGGGATCCCATCCTTTGTTTCCCTTCCCACTCTCTGAATTCAGAGCCCATGATGTCTCATCAATAGATTCCGACCTCTGATTTTCTGATAATGGCAACTGCTCTCTCTCTAATTGCCTTTTCATCTTCTTCCATTTCCTTTACTAATCCAAATTTCAGATTTCACTTCAATTTCCCTAATTCACCTCTGAAATTCAACTCCAAACGATTCAGGGTTCAAGCCCTTAAACAGAAAACCGGCGAAATCGAACGCCCATCTCCACCTTCTTCTTCTTCCTCTTCTGCAGATGAAGTTACCAAGAAGTACGGACTTGAAGCTGGTCTCTGGAAGGTACCTTTCTCTTCCTTTTCTTCTTTATCCACCTGCTATCAACTTTATTGCAACTTAGAACTTAGAACTTAGAACAGATTCATATTCCTTGGAGTGCCTTGCATTTTCACTCTCAAAGGACCTTAGGAAGCAATTTTTGCCTTCTATTTATGCTTTCGATTGTTTGTTTACAATAACCCATTAGTTTAAGCTTTCGGATCAATGGTGAGGTACTGTGCTTGAACCACTGTAGTAGTGTTTTTTTCTCTCCCATTTACTATTGATTTCTGCTCGTTGAATATTCTATAAATAACCCATCAACTTAAGTTTTTTGGTCAATTGGTGATTTAACATGGTGATAATGCATTTATATGTTATTTCAAATTTTTCATAGTCTGTTTAGAATTCCCCAGGTTCTATCATGGCTTTAAATAATGTTTCCACTTGAATTCCAAATGCCTGCCAATGAAAGACTTTCTGAAGAAAAAAAAAGCAGGCAAAAACTCTTTAATTCTTACCTTGAATTCTCCAAAAAGTTCAATTGGCTAGAACATAGTTTGTAGTGATAATGTATGTACTTGCAATTAGTACCTTTTCACAATTTGGAAGAAGTATAGAAGAATACAAAGAATAATATACTGTTTTGCTTAGTGCTATGGCAAAGAAGAATGCTTGTGGTTATCCTTTCCTAATAACACCAAATGAGAAATTAATGTTAGTTGTGCAGATATTTAGCTCAAAGGAGGATGGTGAGGAAGGTGAAGGGAAAAACAAATCAAAGGGTGATCAAGCAAAAGAGTTGCTTGCAAAATATGGAGGTGCATATTTAGCCACCTCCATAACTCTATCCTTGATATCATTCTCTCTGTGTTACGCGCTCATCAGTGCCGGTGTCGACGTTCAAGCTCTTCTGCAGAAGGTAATAATGACATTTGGGAAGAGCTGTTCTTTGTTTGATGTTTGATCAAATAGATTCACAAGGGATTTTGTTTTCAACACTTGAAAACTTTGCAGGTAGGAATTTCAACTGATGAGACTGGAGAGAAAGTTGGAGCATTTGCTTTGGCGTACGCAGCACATAAAGCTGCTTCTCCAATAAGGTTTCCTCCAACAGTGGCTCTCACTCCAATCGTTGCAAGTTGGATAGGGAAGAAAGTTGAGAAAGAGAATTAGCATAAATACCATATATTATAAAGTTATTGGTTAGAGTTTTATCTGAAGTTATTTGATAGTGTATATTGGGCTAAATCCCATGTAGATTGCATGCTAATGATTTATAATGTATCCATCCTTTTGAATCATAGCTAATGCTTCTGGTATTTAGCAATTGTATTAGTAGGCCTCTTAGAGATTTTCGCTGTTAAAAAAGCAGTTAAGAGAGTTAAAAATCGATAATTTTACACAATCATTTGGTTATTTAGTTCAGCATTTGACTGTCTAATAAGTAACAAGTAGCAATAATAATAATAAGGTTTAAATACTACCTTGG

mRNA sequence

GGGTAACATTTTCCTGTTATAAACTGTGTGAAGAACAATGGTGGTGACGACAGACGATTAAGCTTGAAGCAAATATCTGGCTTACAACGCTTCACATAAATTTCCCTTTCTCTTTTGATTTTGTGGGATCCCATCCTTTGTTTCCCTTCCCACTCTCTGAATTCAGAGCCCATGATGTCTCATCAATAGATTCCGACCTCTGATTTTCTGATAATGGCAACTGCTCTCTCTCTAATTGCCTTTTCATCTTCTTCCATTTCCTTTACTAATCCAAATTTCAGATTTCACTTCAATTTCCCTAATTCACCTCTGAAATTCAACTCCAAACGATTCAGGGTTCAAGCCCTTAAACAGAAAACCGGCGAAATCGAACGCCCATCTCCACCTTCTTCTTCTTCCTCTTCTGCAGATGAAGTTACCAAGAAGTACGGACTTGAAGCTGGTCTCTGGAAGATATTTAGCTCAAAGGAGGATGGTGAGGAAGGTGAAGGGAAAAACAAATCAAAGGGTGATCAAGCAAAAGAGTTGCTTGCAAAATATGGAGGTGCATATTTAGCCACCTCCATAACTCTATCCTTGATATCATTCTCTCTGTGTTACGCGCTCATCAGTGCCGGTGTCGACGTTCAAGCTCTTCTGCAGAAGGTAGGAATTTCAACTGATGAGACTGGAGAGAAAGTTGGAGCATTTGCTTTGGCGTACGCAGCACATAAAGCTGCTTCTCCAATAAGGTTTCCTCCAACAGTGGCTCTCACTCCAATCGTTGCAAGTTGGATAGGGAAGAAAGTTGAGAAAGAGAATTAGCATAAATACCATATATTATAAAGTTATTGGTTAGAGTTTTATCTGAAGTTATTTGATAGTGTATATTGGGCTAAATCCCATGTAGATTGCATGCTAATGATTTATAATGTATCCATCCTTTTGAATCATAGCTAATGCTTCTGGTATTTAGCAATTGTATTAGTAGGCCTCTTAGAGATTTTCGCTGTTAAAAAAGCAGTTAAGAGAGTTAAAAATCGATAATTTTACACAATCATTTGGTTATTTAGTTCAGCATTTGACTGTCTAATAAGTAACAAGTAGCAATAATAATAATAAGGTTTAAATACTACCTTGG

Coding sequence (CDS)

ATGGCAACTGCTCTCTCTCTAATTGCCTTTTCATCTTCTTCCATTTCCTTTACTAATCCAAATTTCAGATTTCACTTCAATTTCCCTAATTCACCTCTGAAATTCAACTCCAAACGATTCAGGGTTCAAGCCCTTAAACAGAAAACCGGCGAAATCGAACGCCCATCTCCACCTTCTTCTTCTTCCTCTTCTGCAGATGAAGTTACCAAGAAGTACGGACTTGAAGCTGGTCTCTGGAAGATATTTAGCTCAAAGGAGGATGGTGAGGAAGGTGAAGGGAAAAACAAATCAAAGGGTGATCAAGCAAAAGAGTTGCTTGCAAAATATGGAGGTGCATATTTAGCCACCTCCATAACTCTATCCTTGATATCATTCTCTCTGTGTTACGCGCTCATCAGTGCCGGTGTCGACGTTCAAGCTCTTCTGCAGAAGGTAGGAATTTCAACTGATGAGACTGGAGAGAAAGTTGGAGCATTTGCTTTGGCGTACGCAGCACATAAAGCTGCTTCTCCAATAAGGTTTCCTCCAACAGTGGCTCTCACTCCAATCGTTGCAAGTTGGATAGGGAAGAAAGTTGAGAAAGAGAATTAG

Protein sequence

MATALSLIAFSSSSISFTNPNFRFHFNFPNSPLKFNSKRFRVQALKQKTGEIERPSPPSSSSSSADEVTKKYGLEAGLWKIFSSKEDGEEGEGKNKSKGDQAKELLAKYGGAYLATSITLSLISFSLCYALISAGVDVQALLQKVGISTDETGEKVGAFALAYAAHKAASPIRFPPTVALTPIVASWIGKKVEKEN
Homology
[Close]
BLAST of Lsi10G011430 vs. Swiss-Prot
Match: F210B_HUMAN (Protein FAM210B OS=Homo sapiens GN=FAM210B PE=1 SV=2)

HSP 1 Score: 60.5 bits (145), Expect = 2.4e-08
Identity = 35/103 (33.98%), Postives = 57/103 (55.34%), Query Frame = 1 

Query: 92  EGKNKSKGDQAKELLAKYGGAYLATSITLSLISFSLCYALISAGVDVQALLQKVGISTDE 151
           E K +SK  Q K++  +YG   ++  I +SLIS  + Y ++S+GVD+ A+L K+G     
Sbjct: 79  EEKKQSKSQQLKKIFQEYGTVGVSLHIGISLISLGIFYMVVSSGVDMPAILLKLGFKESL 138

Query: 152 TGEKVGA----FALAYAAHKAASPIRFPPTVALTPIVASWIGK 191
              K+ A    F +AYA HK  +P+R   T+   P++  +  K
Sbjct: 139 VQSKMAAGTSTFVVAYAIHKLFAPVRISITLVSVPLIVRYFRK 181

[Close]
BLAST of Lsi10G011430 vs. Swiss-Prot
Match: F210B_MOUSE (Protein FAM210B OS=Mus musculus GN=Fam210b PE=1 SV=3)

HSP 1 Score: 55.8 bits (133), Expect = 6.0e-07
Identity = 32/101 (31.68%), Postives = 54/101 (53.47%), Query Frame = 1 

Query: 91  GEGKNKSKGDQAKELLAKYGGAYLATSITLSLISFSLCYALISAGVDVQALLQKVGISTD 150
           G  K  S+  Q K++  +YG   ++  I +SL+S  + Y ++S+G+D+ A+L K+G    
Sbjct: 76  GTEKKLSRTQQLKKVFQEYGAVGVSMHIGISLVSLGIFYTVVSSGIDMSAILLKLGFKES 135

Query: 151 ETGEKVGA----FALAYAAHKAASPIRFPPTVALTPIVASW 188
               K+ A    F +AYA HK  +P+R   T+   P V  +
Sbjct: 136 LVQSKMAAGTSTFVVAYAIHKLFAPVRISITLVSVPFVVRY 176

[Close]
BLAST of Lsi10G011430 vs. TrEMBL
Match: A0A0A0KEW3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G425800 PE=4 SV=1)

HSP 1 Score: 326.2 bits (835), Expect = 2.6e-86
Identity = 182/197 (92.39%), Postives = 183/197 (92.89%), Query Frame = 1 

Query: 1   MATALSLIAFSSSS-ISFTNPNFRFHFNFPNSPLKFNSKRFRVQALKQKTGEIERPSPPS 60
           MA A SLIAFSSSS ISFT+PNFRFHFNFPN PLKFNSK FRVQALKQKTGEIERPSP  
Sbjct: 1   MAIASSLIAFSSSSNISFTHPNFRFHFNFPNPPLKFNSKPFRVQALKQKTGEIERPSP-- 60

Query: 61  SSSSSADEVTKKYGLEAGLWKIFSSKEDGEEGEGKNKSKGDQAKELLAKYGGAYLATSIT 120
           SSSSSADEVTKKYGLEAGLWKIFSSKE   EGEG NKSKGDQAKELLAKYGGAYLATSIT
Sbjct: 61  SSSSSADEVTKKYGLEAGLWKIFSSKE---EGEGTNKSKGDQAKELLAKYGGAYLATSIT 120

Query: 121 LSLISFSLCYALISAGVDVQALLQKVGISTDETGEKVGAFALAYAAHKAASPIRFPPTVA 180
           LSLISFSLCYALISAGVDVQ LLQKVGIS DETGEKVG FALAYAAHKAASPIRFPPTVA
Sbjct: 121 LSLISFSLCYALISAGVDVQVLLQKVGISIDETGEKVGTFALAYAAHKAASPIRFPPTVA 180

Query: 181 LTPIVASWIGKKVEKEN 197
           LTPIVASWIGKKVEKEN
Sbjct: 181 LTPIVASWIGKKVEKEN 192

[Close]
BLAST of Lsi10G011430 vs. TrEMBL
Match: W9S681_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_016324 PE=4 SV=1)

HSP 1 Score: 255.4 bits (651), Expect = 5.7e-65
Identity = 138/172 (80.23%), Postives = 150/172 (87.21%), Query Frame = 1 

Query: 29  PNSPLKFNSKRFRVQALKQKTGEIERPSPPSSSSSS----ADEVTKKYGLEAGLWKIFSS 88
           P+     + KRFR++ALK+KT EI+ P+  SSSSSS    ADE+TKKYGLEAGLWKIFSS
Sbjct: 35  PSQSSSSDVKRFRIKALKEKTEEIKNPTSSSSSSSSSSAAADEITKKYGLEAGLWKIFSS 94

Query: 89  KEDGEEGEGKNKSKGDQAKELLAKYGGAYLATSITLSLISFSLCYALISAGVDVQALLQK 148
           KE+G+E   K KSKGDQAKELLAKYGGAYLATSITLS+ISFSLCY LI AGVDVQALLQK
Sbjct: 95  KEEGKEDGEKKKSKGDQAKELLAKYGGAYLATSITLSIISFSLCYVLIGAGVDVQALLQK 154

Query: 149 VGISTDETGEKVGAFALAYAAHKAASPIRFPPTVALTPIVASWIGKKVEKEN 197
           VGIS DETGEKVG FALAYAAHKAASPIRFPPTVALTPIVASWIGKKVEKE+
Sbjct: 155 VGISADETGEKVGTFALAYAAHKAASPIRFPPTVALTPIVASWIGKKVEKED 206

[Close]
BLAST of Lsi10G011430 vs. TrEMBL
Match: D7TCP7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0080g01100 PE=4 SV=1)

HSP 1 Score: 255.0 bits (650), Expect = 7.5e-65
Identity = 142/196 (72.45%), Postives = 159/196 (81.12%), Query Frame = 1 

Query: 1   MATALSLIAFSSSSISFTNPNFRFHFNFPNSPLKFNSKRFRVQALKQKTGEIERPSPPSS 60
           MA AL    FSS+S+S     FR   +    P K N   FRV+A+K+KT EI  PSP  S
Sbjct: 1   MAGALLGTCFSSASLSINTREFRIGSSASTPPSKPNFTCFRVRAIKEKTEEIRTPSPSPS 60

Query: 61  SSSSADEVTKKYGLEAGLWKIFSSKEDGEEGEGKNKSKGDQAKELLAKYGGAYLATSITL 120
           SS SA E+T+K+GLEAGLWKIFSSK++ +EG  + KSKG++AKELLAKYGGAYLATSITL
Sbjct: 61  SSPSAQEITEKFGLEAGLWKIFSSKDEEKEGGKREKSKGEEAKELLAKYGGAYLATSITL 120

Query: 121 SLISFSLCYALISAGVDVQALLQKVGISTDETGEKVGAFALAYAAHKAASPIRFPPTVAL 180
           SLISFSLCYALI+AGVDVQALLQKVGIS D TGEKVG FALAYAAHKAASPIRFPPTVAL
Sbjct: 121 SLISFSLCYALINAGVDVQALLQKVGISVDATGEKVGTFALAYAAHKAASPIRFPPTVAL 180

Query: 181 TPIVASWIGKKVEKEN 197
           TPIVASWIGK V+KEN
Sbjct: 181 TPIVASWIGKIVDKEN 196

[Close]
BLAST of Lsi10G011430 vs. TrEMBL
Match: A0A061GVY6_THECC (Transmembrane protein C20orf108 OS=Theobroma cacao GN=TCM_041293 PE=4 SV=1)

HSP 1 Score: 246.9 bits (629), Expect = 2.0e-62
Identity = 145/198 (73.23%), Postives = 159/198 (80.30%), Query Frame = 1 

Query: 1   MATALSLIAFSSSSISFTNP---NFRFHFNFPNSPLKFNSKRFRVQALKQKTGEIERPSP 60
           MAT  +L   S SS SF N    +   +F    + +K   K FR++A+K+KT EI+ P  
Sbjct: 1   MATITTLTVTSLSSSSFLNTKNCSKLSYFTSTPTSIKPKLKSFRIRAVKEKTEEIQTP-- 60

Query: 61  PSSSSSSADEVTKKYGLEAGLWKIFSSKEDGEEGEGKNKSKGDQAKELLAKYGGAYLATS 120
             SSSSSADEVTK YGLEAGLWKIFSSKE+GEE     KSKGDQAKELLAKYGGAYLATS
Sbjct: 61  --SSSSSADEVTKTYGLEAGLWKIFSSKEEGEE----KKSKGDQAKELLAKYGGAYLATS 120

Query: 121 ITLSLISFSLCYALISAGVDVQALLQKVGISTDETGEKVGAFALAYAAHKAASPIRFPPT 180
           ITLSLISF+LCYALISAG+DVQALL KVGISTD TGEKVG FALAYAAHKAASPIRFPPT
Sbjct: 121 ITLSLISFALCYALISAGIDVQALLLKVGISTDATGEKVGTFALAYAAHKAASPIRFPPT 180

Query: 181 VALTPIVASWIGKKVEKE 196
           VALTPIVASWIGKKVEK+
Sbjct: 181 VALTPIVASWIGKKVEKD 190

[Close]
BLAST of Lsi10G011430 vs. TrEMBL
Match: A0A068UF03_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00023893001 PE=4 SV=1)

HSP 1 Score: 243.8 bits (621), Expect = 1.7e-61
Identity = 132/168 (78.57%), Postives = 147/168 (87.50%), Query Frame = 1 

Query: 29  PNSPLKFNSKRFRVQALKQKTGEIERPSPPSSSSSSADEVTKKYGLEAGLWKIFSSKEDG 88
           P+S     S  FR++A+K+KT EI+     SS+ SSA++VTKKYGLE GLWKIFSSKE+G
Sbjct: 33  PSSSKSNYSTSFRLRAVKEKTEEIK-----SSAPSSAEDVTKKYGLEVGLWKIFSSKEEG 92

Query: 89  EEGEGKNKSKGDQAKELLAKYGGAYLATSITLSLISFSLCYALISAGVDVQALLQKVGIS 148
           +EG  + KSKGDQAKELLAKYGGAYLATSITLSLISF+LCYALISAGVDV ALLQKVGIS
Sbjct: 93  DEGNEEKKSKGDQAKELLAKYGGAYLATSITLSLISFALCYALISAGVDVPALLQKVGIS 152

Query: 149 TDETGEKVGAFALAYAAHKAASPIRFPPTVALTPIVASWIGKKVEKEN 197
           T+E GEKVG FALAYAAHKAASPIRFPPTVALTPIVASWIGKKV+KEN
Sbjct: 153 TNEAGEKVGTFALAYAAHKAASPIRFPPTVALTPIVASWIGKKVDKEN 195

[Close]
BLAST of Lsi10G011430 vs. TAIR10
Match: AT2G27290.1 (AT2G27290.1 Protein of unknown function (DUF1279))

HSP 1 Score: 229.9 bits (585), Expect = 1.3e-60
Identity = 137/200 (68.50%), Postives = 161/200 (80.50%), Query Frame = 1 

Query: 1   MATALSLIAFSSSSISFTNPNFRFHFNFPNSPLKFNSKRFRVQALKQKTGEIERP-SPPS 60
           MA  L  I  SSS ++  N   RF     +S +  +SK+FR +A+++K  +I++  SPPS
Sbjct: 1   MAMMLLQIPPSSSLLNTRNLQIRFF----HSSVSASSKKFRCRAVREKAEDIDKNISPPS 60

Query: 61  SSSS--SADEVTKKYGLEAGLWKIFSSKED-GEEGEGKNK-SKGDQAKELLAKYGGAYLA 120
           SS    SA+EVTKKYGLE GLWKI SSK+D G +G+ K K SK D+AKELLAKYGGAYLA
Sbjct: 61  SSPPPPSAEEVTKKYGLEVGLWKILSSKDDEGSDGDNKKKKSKTDEAKELLAKYGGAYLA 120

Query: 121 TSITLSLISFSLCYALISAGVDVQALLQKVGISTDETGEKVGAFALAYAAHKAASPIRFP 180
           TSITLSLISFSLCY L+++GVDVQALL KVGIST+ETGEKVGAFALAYAAHKAASPIRFP
Sbjct: 121 TSITLSLISFSLCYVLVTSGVDVQALLLKVGISTNETGEKVGAFALAYAAHKAASPIRFP 180

Query: 181 PTVALTPIVASWIGKKVEKE 196
           PTVALTPIVA+WIGKKV+KE
Sbjct: 181 PTVALTPIVANWIGKKVDKE 196

[Close]
BLAST of Lsi10G011430 vs. NCBI nr
Match: gi|449444807|ref|XP_004140165.1| (PREDICTED: uncharacterized protein LOC101219558 [Cucumis sativus])

HSP 1 Score: 326.2 bits (835), Expect = 3.8e-86
Identity = 182/197 (92.39%), Postives = 183/197 (92.89%), Query Frame = 1 

Query: 1   MATALSLIAFSSSS-ISFTNPNFRFHFNFPNSPLKFNSKRFRVQALKQKTGEIERPSPPS 60
           MA A SLIAFSSSS ISFT+PNFRFHFNFPN PLKFNSK FRVQALKQKTGEIERPSP  
Sbjct: 1   MAIASSLIAFSSSSNISFTHPNFRFHFNFPNPPLKFNSKPFRVQALKQKTGEIERPSP-- 60

Query: 61  SSSSSADEVTKKYGLEAGLWKIFSSKEDGEEGEGKNKSKGDQAKELLAKYGGAYLATSIT 120
           SSSSSADEVTKKYGLEAGLWKIFSSKE   EGEG NKSKGDQAKELLAKYGGAYLATSIT
Sbjct: 61  SSSSSADEVTKKYGLEAGLWKIFSSKE---EGEGTNKSKGDQAKELLAKYGGAYLATSIT 120

Query: 121 LSLISFSLCYALISAGVDVQALLQKVGISTDETGEKVGAFALAYAAHKAASPIRFPPTVA 180
           LSLISFSLCYALISAGVDVQ LLQKVGIS DETGEKVG FALAYAAHKAASPIRFPPTVA
Sbjct: 121 LSLISFSLCYALISAGVDVQVLLQKVGISIDETGEKVGTFALAYAAHKAASPIRFPPTVA 180

Query: 181 LTPIVASWIGKKVEKEN 197
           LTPIVASWIGKKVEKEN
Sbjct: 181 LTPIVASWIGKKVEKEN 192

[Close]
BLAST of Lsi10G011430 vs. NCBI nr
Match: gi|659097368|ref|XP_008449587.1| (PREDICTED: protein FAM210B [Cucumis melo])

HSP 1 Score: 326.2 bits (835), Expect = 3.8e-86
Identity = 181/197 (91.88%), Postives = 184/197 (93.40%), Query Frame = 1 

Query: 1   MATALSLIAFSS-SSISFTNPNFRFHFNFPNSPLKFNSKRFRVQALKQKTGEIERPSPPS 60
           MATA SLIAFSS S+ SFT+PNFRFHFNFPN PLKFNSK FRVQALKQKTGEI+RPSP  
Sbjct: 1   MATASSLIAFSSFSNFSFTHPNFRFHFNFPNPPLKFNSKSFRVQALKQKTGEIDRPSP-- 60

Query: 61  SSSSSADEVTKKYGLEAGLWKIFSSKEDGEEGEGKNKSKGDQAKELLAKYGGAYLATSIT 120
           SSSSSADEVTKKYGLEAGLWKIFSSKE   EGEG NKSKGDQAKELLAKYGGAYLATSIT
Sbjct: 61  SSSSSADEVTKKYGLEAGLWKIFSSKE---EGEGTNKSKGDQAKELLAKYGGAYLATSIT 120

Query: 121 LSLISFSLCYALISAGVDVQALLQKVGISTDETGEKVGAFALAYAAHKAASPIRFPPTVA 180
           LSLISFSLCYALISAGVDVQALLQKVGISTDETG KVG FALAYAAHKAASPIRFPPTVA
Sbjct: 121 LSLISFSLCYALISAGVDVQALLQKVGISTDETGGKVGTFALAYAAHKAASPIRFPPTVA 180

Query: 181 LTPIVASWIGKKVEKEN 197
           LTPIVASWIGKKVEKEN
Sbjct: 181 LTPIVASWIGKKVEKEN 192

[Close]
BLAST of Lsi10G011430 vs. NCBI nr
Match: gi|703120137|ref|XP_010102032.1| (hypothetical protein L484_016324 [Morus notabilis])

HSP 1 Score: 255.4 bits (651), Expect = 8.2e-65
Identity = 138/172 (80.23%), Postives = 150/172 (87.21%), Query Frame = 1 

Query: 29  PNSPLKFNSKRFRVQALKQKTGEIERPSPPSSSSSS----ADEVTKKYGLEAGLWKIFSS 88
           P+     + KRFR++ALK+KT EI+ P+  SSSSSS    ADE+TKKYGLEAGLWKIFSS
Sbjct: 35  PSQSSSSDVKRFRIKALKEKTEEIKNPTSSSSSSSSSSAAADEITKKYGLEAGLWKIFSS 94

Query: 89  KEDGEEGEGKNKSKGDQAKELLAKYGGAYLATSITLSLISFSLCYALISAGVDVQALLQK 148
           KE+G+E   K KSKGDQAKELLAKYGGAYLATSITLS+ISFSLCY LI AGVDVQALLQK
Sbjct: 95  KEEGKEDGEKKKSKGDQAKELLAKYGGAYLATSITLSIISFSLCYVLIGAGVDVQALLQK 154

Query: 149 VGISTDETGEKVGAFALAYAAHKAASPIRFPPTVALTPIVASWIGKKVEKEN 197
           VGIS DETGEKVG FALAYAAHKAASPIRFPPTVALTPIVASWIGKKVEKE+
Sbjct: 155 VGISADETGEKVGTFALAYAAHKAASPIRFPPTVALTPIVASWIGKKVEKED 206

[Close]
BLAST of Lsi10G011430 vs. NCBI nr
Match: gi|731394470|ref|XP_010651851.1| (PREDICTED: uncharacterized protein LOC100258627 [Vitis vinifera])

HSP 1 Score: 255.0 bits (650), Expect = 1.1e-64
Identity = 142/196 (72.45%), Postives = 159/196 (81.12%), Query Frame = 1 

Query: 1   MATALSLIAFSSSSISFTNPNFRFHFNFPNSPLKFNSKRFRVQALKQKTGEIERPSPPSS 60
           MA AL    FSS+S+S     FR   +    P K N   FRV+A+K+KT EI  PSP  S
Sbjct: 1   MAGALLGTCFSSASLSINTREFRIGSSASTPPSKPNFTCFRVRAIKEKTEEIRTPSPSPS 60

Query: 61  SSSSADEVTKKYGLEAGLWKIFSSKEDGEEGEGKNKSKGDQAKELLAKYGGAYLATSITL 120
           SS SA E+T+K+GLEAGLWKIFSSK++ +EG  + KSKG++AKELLAKYGGAYLATSITL
Sbjct: 61  SSPSAQEITEKFGLEAGLWKIFSSKDEEKEGGKREKSKGEEAKELLAKYGGAYLATSITL 120

Query: 121 SLISFSLCYALISAGVDVQALLQKVGISTDETGEKVGAFALAYAAHKAASPIRFPPTVAL 180
           SLISFSLCYALI+AGVDVQALLQKVGIS D TGEKVG FALAYAAHKAASPIRFPPTVAL
Sbjct: 121 SLISFSLCYALINAGVDVQALLQKVGISVDATGEKVGTFALAYAAHKAASPIRFPPTVAL 180

Query: 181 TPIVASWIGKKVEKEN 197
           TPIVASWIGK V+KEN
Sbjct: 181 TPIVASWIGKIVDKEN 196

[Close]
BLAST of Lsi10G011430 vs. NCBI nr
Match: gi|1009174533|ref|XP_015868392.1| (PREDICTED: uncharacterized protein LOC107405812 isoform X2 [Ziziphus jujuba])

HSP 1 Score: 252.7 bits (644), Expect = 5.3e-64
Identity = 146/200 (73.00%), Postives = 163/200 (81.50%), Query Frame = 1 

Query: 1   MATALSLIAFSSSSISFTNPNFRFHF----NFPNSPLKFNSKRFRVQALKQKTGEIERPS 60
           M TAL +   SS+S    N   R       +FP S  K   KRFRV +LK+KT EI+ P 
Sbjct: 1   MTTALQVPPLSSASY-LNNGQLRLRHCCSSSFPPSSPKL--KRFRVNSLKEKTQEIKNP- 60

Query: 61  PPSSSSSSADEVTKKYGLEAGLWKIFSSKEDGEEGEGKNKSKGDQAKELLAKYGGAYLAT 120
              SSSSSA+E+TKKYGLEAGLWKIF+SKE+G++G  + KSKGDQAKELLAKYGGAYLAT
Sbjct: 61  ---SSSSSAEEITKKYGLEAGLWKIFNSKEEGKQGGEEKKSKGDQAKELLAKYGGAYLAT 120

Query: 121 SITLSLISFSLCYALISAGVDVQALLQKVGISTDETGEKVGAFALAYAAHKAASPIRFPP 180
           SITLSLISF+LCY LI+AG+DVQALLQKVGIST+ETGEKVG FALAYAAHKAASPIRFPP
Sbjct: 121 SITLSLISFALCYVLINAGIDVQALLQKVGISTNETGEKVGTFALAYAAHKAASPIRFPP 180

Query: 181 TVALTPIVASWIGKKVEKEN 197
           TVALTPIVASWIGKKVEKEN
Sbjct: 181 TVALTPIVASWIGKKVEKEN 193

The following BLAST results are available for this feature:
BLAST of Lsi10G011430 vs. Swiss-Prot
Match NameE-valueIdentityDescription
F210B_HUMAN2.4e-0833.98Protein FAM210B OS=Homo sapiens GN=FAM210B PE=1 SV=2[more]
F210B_MOUSE6.0e-0731.68Protein FAM210B OS=Mus musculus GN=Fam210b PE=1 SV=3[more]
BLAST of Lsi10G011430 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KEW3_CUCSA2.6e-8692.39Uncharacterized protein OS=Cucumis sativus GN=Csa_6G425800 PE=4 SV=1[more]
W9S681_9ROSA5.7e-6580.23Uncharacterized protein OS=Morus notabilis GN=L484_016324 PE=4 SV=1[more]
D7TCP7_VITVI7.5e-6572.45Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0080g01100 PE=4 SV=... [more]
A0A061GVY6_THECC2.0e-6273.23Transmembrane protein C20orf108 OS=Theobroma cacao GN=TCM_041293 PE=4 SV=1[more]
A0A068UF03_COFCA1.7e-6178.57Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00023893001 PE=4 SV=1[more]
BLAST of Lsi10G011430 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G27290.11.3e-6068.50 Protein of unknown function (DUF1279)[more]
BLAST of Lsi10G011430 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449444807|ref|XP_004140165.1|3.8e-8692.39PREDICTED: uncharacterized protein LOC101219558 [Cucumis sativus][more]
gi|659097368|ref|XP_008449587.1|3.8e-8691.88PREDICTED: protein FAM210B [Cucumis melo][more]
gi|703120137|ref|XP_010102032.1|8.2e-6580.23hypothetical protein L484_016324 [Morus notabilis][more]
gi|731394470|ref|XP_010651851.1|1.1e-6472.45PREDICTED: uncharacterized protein LOC100258627 [Vitis vinifera][more]
gi|1009174533|ref|XP_015868392.1|5.3e-6473.00PREDICTED: uncharacterized protein LOC107405812 isoform X2 [Ziziphus jujuba][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR009688DUF1279
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0030154 cell differentiation
biological_process GO:0009965 leaf morphogenesis
biological_process GO:0006661 phosphatidylinositol biosynthetic process
biological_process GO:0045893 positive regulation of transcription, DNA-templated
biological_process GO:0009987 cellular process
biological_process GO:0044699 single-organism process
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi10G011430.1Lsi10G011430.1mRNA


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009688Domain of unknown function DUF1279PFAMPF06916DUF1279coord: 101..182
score: 1.5
NoneNo IPR availablePANTHERPTHR21377UNCHARACTERIZEDcoord: 36..191
score: 6.4
NoneNo IPR availablePANTHERPTHR21377:SF3SUBFAMILY NOT NAMEDcoord: 36..191
score: 6.4

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Lsi10G011430Csa6G425800Cucumber (Chinese Long) v2culsiB414
Lsi10G011430CSPI06G23360Wild cucumber (PI 183967)cpilsiB417
Lsi10G011430Cucsa.185840Cucumber (Gy14) v1cgylsiB307
Lsi10G011430CmaCh20G001540Cucurbita maxima (Rimu)cmalsiB500
Lsi10G011430CmoCh20G001700Cucurbita moschata (Rifu)cmolsiB484
Lsi10G011430Cla008625Watermelon (97103) v1lsiwmB078
Lsi10G011430MELO3C014513Melon (DHL92) v3.5.1lsimeB072
Lsi10G011430ClCG02G022370Watermelon (Charleston Gray)lsiwcgB054
Lsi10G011430MELO3C014513.2Melon (DHL92) v3.6.1lsimedB074
Lsi10G011430Cla97C02G048460Watermelon (97103) v2lsiwmbB052
Lsi10G011430Bhi10G000137Wax gourdlsiwgoB079
Lsi10G011430Cp4.1LG16g08040Cucurbita pepo (Zucchini)cpelsiB227
Lsi10G011430CsGy6G022610Cucumber (Gy14) v2cgyblsiB379
Lsi10G011430Carg18416Silver-seed gourdcarlsiB375
Lsi10G011430CsaV3_6G038500Cucumber (Chinese Long) v3cuclsiB440
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi10G011430Wild cucumber (PI 183967)cpilsiB006
Lsi10G011430Wild cucumber (PI 183967)cpilsiB161
Lsi10G011430Wild cucumber (PI 183967)cpilsiB423
Lsi10G011430Cucumber (Chinese Long) v2culsiB005
Lsi10G011430Cucumber (Chinese Long) v2culsiB162
Lsi10G011430Cucumber (Chinese Long) v2culsiB421
Lsi10G011430Melon (DHL92) v3.5.1lsimeB070
Lsi10G011430Melon (DHL92) v3.5.1lsimeB076
Lsi10G011430Watermelon (Charleston Gray)lsiwcgB037
Lsi10G011430Watermelon (Charleston Gray)lsiwcgB068
Lsi10G011430Watermelon (97103) v1lsiwmB048
Lsi10G011430Watermelon (97103) v1lsiwmB064
Lsi10G011430Cucumber (Gy14) v2cgyblsiB005
Lsi10G011430Cucumber (Gy14) v2cgyblsiB384
Lsi10G011430Melon (DHL92) v3.6.1lsimedB078
Lsi10G011430Silver-seed gourdcarlsiB212
Lsi10G011430Silver-seed gourdcarlsiB222
Lsi10G011430Silver-seed gourdcarlsiB838
Lsi10G011430Cucumber (Chinese Long) v3cuclsiB005
Lsi10G011430Cucumber (Chinese Long) v3cuclsiB178
Lsi10G011430Cucumber (Chinese Long) v3cuclsiB444
Lsi10G011430Watermelon (97103) v2lsiwmbB033
Lsi10G011430Watermelon (97103) v2lsiwmbB067
Lsi10G011430Bottle gourd (USVL1VR-Ls)lsilsiB040
Lsi10G011430Bottle gourd (USVL1VR-Ls)lsilsiB025
Lsi10G011430Cucumber (Gy14) v1cgylsiB086
Lsi10G011430Cucumber (Gy14) v1cgylsiB395
Lsi10G011430Cucurbita maxima (Rimu)cmalsiB227
Lsi10G011430Cucurbita maxima (Rimu)cmalsiB540
Lsi10G011430Cucurbita maxima (Rimu)cmalsiB594
Lsi10G011430Cucurbita maxima (Rimu)cmalsiB746
Lsi10G011430Cucurbita maxima (Rimu)cmalsiB780
Lsi10G011430Cucurbita moschata (Rifu)cmolsiB215
Lsi10G011430Cucurbita moschata (Rifu)cmolsiB525
Lsi10G011430Cucurbita moschata (Rifu)cmolsiB576
Lsi10G011430Cucurbita moschata (Rifu)cmolsiB737
Lsi10G011430Cucurbita moschata (Rifu)cmolsiB772
Lsi10G011430Cucurbita pepo (Zucchini)cpelsiB047
Lsi10G011430Cucurbita pepo (Zucchini)cpelsiB389
Lsi10G011430Cucurbita pepo (Zucchini)cpelsiB488
Lsi10G011430Cucurbita pepo (Zucchini)cpelsiB591
Lsi10G011430Cucurbita pepo (Zucchini)cpelsiB598
Lsi10G011430Cucurbita pepo (Zucchini)cpelsiB699