CmaCh20G001540 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh20G001540
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Protein FAM210B-like protein
Location	Cma_Chr20 : 758856 .. 760583 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ACGATTGTGGTTGAAGCAAATATCTGGCTTACAACGCTTCACATAGAATTCTCTCTCTCTTTGATCTCGTGGGATTCTCGTTTCCCACCCTCCGAATTCAGAGGGCATGCCTCATTACTAGATTACGACCTCTGATTTTCTGATAATGGCAACTGCTCCTTCTCCAATTTGCTTTTCATCTTCTTTCATTTCCTCTCCTGCTTCCTTTCCCGATACAAATTTCAGATTTCCTTTTAGTTCTTCTGTTCGACCTCCGAAATTCAATCCCAAAAGGCTCAGGGTTCAAGCCCTTAAAGAGAAAACCGGCGAAATCGAACGCCCATCTCCATCTCAATCTCCGTCTTCCTCTTCAGCAGATGAAGTTACCAAGAAGTATGGACTTGAAGCTGGTCTCTGGAAGGTACCATTCTCTTCGTTCCTTTTCCTCTATCAATCTGCTATGAACTTGAACGGAAGATAGAAGTTAGAAGACTGATAGCGTACATTTTAATTACGAATTTACCTTAGAAAGAAAAATTTGCAGTCTATTTATTCCTGATTGTTGTTGTGGCAAACAATAACATATTGATTTTCTGTTTCAATTGTTCATATTATGTTCGGCCAAAAAGTGCAATGGACTAGAACATAAGTGATAATGTATGTACTTGCTATCAATACCTCCTCACGATTTGAAAGTAGTAAAGAAGAAAGCAAATTAAATCCAATCAGAAGGTCCATAGGATTTTCAATAAACCGTGACAAATAGTTTCCGAACATATTGATTTTCTGTCTCAATTGTTCATATCTCTGCCTTGTAACAGCAAAGAATAATGGATGGTTATCCTTTCCTGGTAACAGCAAATGAGAAATTCATGTTGGTGTGCAGATATTTAGCTCAAAGGAGGAGGGTGAAGGAAAAGACAAATCAAAGGGGGATCAGGCAAAGGAGCTGCTTGCAAAATATGGAGGTGCATATTTAGCCACCTCCATAACTCTATCCCTGATCTCTTTTGCTGTGTGTTACGCGCTCATCAGCGCCGGTGTCGACGTTCAAGCTCTTCTGCAGAAGGTAATGGCATTTAGGAAGGGTTCCATGAGTTTGTTTGATCTTGATCTTGATCAAATATGTTTCACATGGGGAGATTGGTTTTGTTTGTAACACTTGAAAATTTGCAGGTAGGAATTTCGGTTGATGGGAATGGAGAGAAAGTTGGAACGTTTGCATTGGCATATGCAGCGCATAAAGCAACTTCTCCAATAAGGTTTCCTCCAACAGTGGCCCTTACTTCAGTGGTTGCAACTTGGATTGGGAAGAAAGTAGAGGAAGAGAATTAGCATAACTCTCAGTATTAGTCATTTGTTAGAGGTTTATCTAAGATATTATTTTATTTGATAGTGTATATTGAGCTAAATCCCATATAGATTGTATACTAAATCCCATACAGATGGGCGTTTGATGTGGAAGTTAATAATATGGTTAGAGTCTCAATTTCGAAACTCATTCACTTGAGCGAGACATAGGAGAGTGGAATTTCGTGTGTAGAGGTGAAATCTAAAGATCTACGAAGGAACTTCAAAAGCGAAGGTAGCTCGACAGTCCCTACCCACCCTGTGTGCGAAAGTAGGGGAGCACACTGTTGTGTATGGAGCCTACCAGCTTATTCAATTGTTATATAGTAAAACTATACATAGGAAATGATCATATATATATATGGTCATAAACTAAACTATTGTTTAGTTATCTAGCAC

mRNA sequence

ACGATTGTGGTTGAAGCAAATATCTGGCTTACAACGCTTCACATAGAATTCTCTCTCTCTTTGATCTCGTGGGATTCTCGTTTCCCACCCTCCGAATTCAGAGGGCATGCCTCATTACTAGATTACGACCTCTGATTTTCTGATAATGGCAACTGCTCCTTCTCCAATTTGCTTTTCATCTTCTTTCATTTCCTCTCCTGCTTCCTTTCCCGATACAAATTTCAGATTTCCTTTTAGTTCTTCTGTTCGACCTCCGAAATTCAATCCCAAAAGGCTCAGGGTTCAAGCCCTTAAAGAGAAAACCGGCGAAATCGAACGCCCATCTCCATCTCAATCTCCGTCTTCCTCTTCAGCAGATGAAGTTACCAAGAAGTATGGACTTGAAGCTGGTCTCTGGAAGATATTTAGCTCAAAGGAGGAGGGTGAAGGAAAAGACAAATCAAAGGGGGATCAGGCAAAGGAGCTGCTTGCAAAATATGGAGGTGCATATTTAGCCACCTCCATAACTCTATCCCTGATCTCTTTTGCTGTGTGTTACGCGCTCATCAGCGCCGGTGTCGACGTTCAAGCTCTTCTGCAGAAGGTAGGAATTTCGGTTGATGGGAATGGAGAGAAAGTTGGAACGTTTGCATTGGCATATGCAGCGCATAAAGCAACTTCTCCAATAAGGTTTCCTCCAACAGTGGCCCTTACTTCAGTGGTTGCAACTTGGATTGGGAAGAAAGTAGAGGAAGAGAATTAGCATAACTCTCAGTATTAGTCATTTGTTAGAGGTTTATCTAAGATATTATTTTATTTGATAGTGTATATTGAGCTAAATCCCATATAGATTGTATACTAAATCCCATACAGATGGGCGTTTGATGTGGAAGTTAATAATATGGTTAGAGTCTCAATTTCGAAACTCATTCACTTGAGCGAGACATAGGAGAGTGGAATTTCGTGTGTAGAGGTGAAATCTAAAGATCTACGAAGGAACTTCAAAAGCGAAGGTAGCTCGACAGTCCCTACCCACCCTGTGTGCGAAAGTAGGGGAGCACACTGTTGTGTATGGAGCCTACCAGCTTATTCAATTGTTATATAGTAAAACTATACATAGGAAATGATCATATATATATATGGTCATAAACTAAACTATTGTTTAGTTATCTAGCAC

Coding sequence (CDS)

ATGGCAACTGCTCCTTCTCCAATTTGCTTTTCATCTTCTTTCATTTCCTCTCCTGCTTCCTTTCCCGATACAAATTTCAGATTTCCTTTTAGTTCTTCTGTTCGACCTCCGAAATTCAATCCCAAAAGGCTCAGGGTTCAAGCCCTTAAAGAGAAAACCGGCGAAATCGAACGCCCATCTCCATCTCAATCTCCGTCTTCCTCTTCAGCAGATGAAGTTACCAAGAAGTATGGACTTGAAGCTGGTCTCTGGAAGATATTTAGCTCAAAGGAGGAGGGTGAAGGAAAAGACAAATCAAAGGGGGATCAGGCAAAGGAGCTGCTTGCAAAATATGGAGGTGCATATTTAGCCACCTCCATAACTCTATCCCTGATCTCTTTTGCTGTGTGTTACGCGCTCATCAGCGCCGGTGTCGACGTTCAAGCTCTTCTGCAGAAGGTAGGAATTTCGGTTGATGGGAATGGAGAGAAAGTTGGAACGTTTGCATTGGCATATGCAGCGCATAAAGCAACTTCTCCAATAAGGTTTCCTCCAACAGTGGCCCTTACTTCAGTGGTTGCAACTTGGATTGGGAAGAAAGTAGAGGAAGAGAATTAG

Protein sequence

MATAPSPICFSSSFISSPASFPDTNFRFPFSSSVRPPKFNPKRLRVQALKEKTGEIERPSPSQSPSSSSADEVTKKYGLEAGLWKIFSSKEEGEGKDKSKGDQAKELLAKYGGAYLATSITLSLISFAVCYALISAGVDVQALLQKVGISVDGNGEKVGTFALAYAAHKATSPIRFPPTVALTSVVATWIGKKVEEEN

Homology

[Close]

BLAST of CmaCh20G001540 vs. Swiss-Prot
Match: F210B_HUMAN (Protein FAM210B OS=Homo sapiens GN=FAM210B PE=1 SV=2)

HSP 1 Score: 55.8 bits (133), Expect = 6.1e-07
Identity = 34/103 (33.01%), Postives = 56/103 (54.37%), Query Frame = 1


Query: 94  EGKDKSKGDQAKELLAKYGGAYLATSITLSLISFAVCYALISAGVDVQALLQKVGISVDG 153
           E K +SK  Q K++  +YG   ++  I +SLIS  + Y ++S+GVD+ A+L K+G     
Sbjct: 79  EEKKQSKSQQLKKIFQEYGTVGVSLHIGISLISLGIFYMVVSSGVDMPAILLKLGFKESL 138

Query: 154 NGEKV----GTFALAYAAHKATSPIRFPPTVALTSVVATWIGK 193
              K+     TF +AYA HK  +P+R   T+    ++  +  K
Sbjct: 139 VQSKMAAGTSTFVVAYAIHKLFAPVRISITLVSVPLIVRYFRK 181

[Close]

BLAST of CmaCh20G001540 vs. TrEMBL
Match: A0A0A0KEW3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G425800 PE=4 SV=1)

HSP 1 Score: 279.3 bits (713), Expect = 3.7e-72
Identity = 159/198 (80.30%), Postives = 168/198 (84.85%), Query Frame = 1


Query: 1   MATAPSPICFSSSFISSPASFPDTNFRFPFSSSVRPPKFNPKRLRVQALKEKTGEIERPS 60
           MA A S I FSSS   S  SF   NFRF F+    P KFN K  RVQALK+KTGEIERPS
Sbjct: 1   MAIASSLIAFSSS---SNISFTHPNFRFHFNFPNPPLKFNSKPFRVQALKQKTGEIERPS 60

Query: 61  PSQSPSSSSADEVTKKYGLEAGLWKIFSSKEEGEGKDKSKGDQAKELLAKYGGAYLATSI 120
           PS   SSSSADEVTKKYGLEAGLWKIFSSKEEGEG +KSKGDQAKELLAKYGGAYLATSI
Sbjct: 61  PS---SSSSADEVTKKYGLEAGLWKIFSSKEEGEGTNKSKGDQAKELLAKYGGAYLATSI 120

Query: 121 TLSLISFAVCYALISAGVDVQALLQKVGISVDGNGEKVGTFALAYAAHKATSPIRFPPTV 180
           TLSLISF++CYALISAGVDVQ LLQKVGIS+D  GEKVGTFALAYAAHKA SPIRFPPTV
Sbjct: 121 TLSLISFSLCYALISAGVDVQVLLQKVGISIDETGEKVGTFALAYAAHKAASPIRFPPTV 180

Query: 181 ALTSVVATWIGKKVEEEN 199
           ALT +VA+WIGKKVE+EN
Sbjct: 181 ALTPIVASWIGKKVEKEN 192

[Close]

BLAST of CmaCh20G001540 vs. TrEMBL
Match: W9S681_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_016324 PE=4 SV=1)

HSP 1 Score: 236.1 bits (601), Expect = 3.6e-59
Identity = 129/163 (79.14%), Postives = 142/163 (87.12%), Query Frame = 1


Query: 42  KRLRVQALKEKTGEIERPSPSQSPSSSS---ADEVTKKYGLEAGLWKIFSSKEEGEG--- 101
           KR R++ALKEKT EI+ P+ S S SSSS   ADE+TKKYGLEAGLWKIFSSKEEG+    
Sbjct: 44  KRFRIKALKEKTEEIKNPTSSSSSSSSSSAAADEITKKYGLEAGLWKIFSSKEEGKEDGE 103

Query: 102 KDKSKGDQAKELLAKYGGAYLATSITLSLISFAVCYALISAGVDVQALLQKVGISVDGNG 161
           K KSKGDQAKELLAKYGGAYLATSITLS+ISF++CY LI AGVDVQALLQKVGIS D  G
Sbjct: 104 KKKSKGDQAKELLAKYGGAYLATSITLSIISFSLCYVLIGAGVDVQALLQKVGISADETG 163

Query: 162 EKVGTFALAYAAHKATSPIRFPPTVALTSVVATWIGKKVEEEN 199
           EKVGTFALAYAAHKA SPIRFPPTVALT +VA+WIGKKVE+E+
Sbjct: 164 EKVGTFALAYAAHKAASPIRFPPTVALTPIVASWIGKKVEKED 206

[Close]

BLAST of CmaCh20G001540 vs. TrEMBL
Match: D7TCP7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0080g01100 PE=4 SV=1)

HSP 1 Score: 233.8 bits (595), Expect = 1.8e-58
Identity = 138/201 (68.66%), Postives = 158/201 (78.61%), Query Frame = 1


Query: 1   MATAPSPICFSSSFISSPASFPDTNFRFPFSSSVRPPKFNPKRLRVQALKEKTGEIERPS 60
           MA A    CFSS+ +S         FR   S+S  P K N    RV+A+KEKT EI  PS
Sbjct: 1   MAGALLGTCFSSASLS----INTREFRIGSSASTPPSKPNFTCFRVRAIKEKTEEIRTPS 60

Query: 61  PSQSPSSSSADEVTKKYGLEAGLWKIFSSKEE---GEGKDKSKGDQAKELLAKYGGAYLA 120
           PS S SS SA E+T+K+GLEAGLWKIFSSK+E   G  ++KSKG++AKELLAKYGGAYLA
Sbjct: 61  PSPS-SSPSAQEITEKFGLEAGLWKIFSSKDEEKEGGKREKSKGEEAKELLAKYGGAYLA 120

Query: 121 TSITLSLISFAVCYALISAGVDVQALLQKVGISVDGNGEKVGTFALAYAAHKATSPIRFP 180
           TSITLSLISF++CYALI+AGVDVQALLQKVGISVD  GEKVGTFALAYAAHKA SPIRFP
Sbjct: 121 TSITLSLISFSLCYALINAGVDVQALLQKVGISVDATGEKVGTFALAYAAHKAASPIRFP 180

Query: 181 PTVALTSVVATWIGKKVEEEN 199
           PTVALT +VA+WIGK V++EN
Sbjct: 181 PTVALTPIVASWIGKIVDKEN 196

[Close]

BLAST of CmaCh20G001540 vs. TrEMBL
Match: A0A061GVY6_THECC (Transmembrane protein C20orf108 OS=Theobroma cacao GN=TCM_041293 PE=4 SV=1)

HSP 1 Score: 233.0 bits (593), Expect = 3.1e-58
Identity = 131/168 (77.98%), Postives = 143/168 (85.12%), Query Frame = 1


Query: 30  FSSSVRPPKFNPKRLRVQALKEKTGEIERPSPSQSPSSSSADEVTKKYGLEAGLWKIFSS 89
           F+S+    K   K  R++A+KEKT EI+ PS     SSSSADEVTK YGLEAGLWKIFSS
Sbjct: 29  FTSTPTSIKPKLKSFRIRAVKEKTEEIQTPS-----SSSSADEVTKTYGLEAGLWKIFSS 88

Query: 90  KEEGEGKDKSKGDQAKELLAKYGGAYLATSITLSLISFAVCYALISAGVDVQALLQKVGI 149
           KEEGE K KSKGDQAKELLAKYGGAYLATSITLSLISFA+CYALISAG+DVQALL KVGI
Sbjct: 89  KEEGEEK-KSKGDQAKELLAKYGGAYLATSITLSLISFALCYALISAGIDVQALLLKVGI 148

Query: 150 SVDGNGEKVGTFALAYAAHKATSPIRFPPTVALTSVVATWIGKKVEEE 198
           S D  GEKVGTFALAYAAHKA SPIRFPPTVALT +VA+WIGKKVE++
Sbjct: 149 STDATGEKVGTFALAYAAHKAASPIRFPPTVALTPIVASWIGKKVEKD 190

[Close]

BLAST of CmaCh20G001540 vs. TrEMBL
Match: A0A0B0P207_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_06574 PE=4 SV=1)

HSP 1 Score: 231.5 bits (589), Expect = 9.0e-58
Identity = 132/167 (79.04%), Postives = 146/167 (87.43%), Query Frame = 1


Query: 31  SSSVRPPKFNPKRLRVQALKEKTGEIERPSPSQSPSSSSADEVTKKYGLEAGLWKIFSSK 90
           S+S++P KF  +  +++A+KEK  EI+ P PS S SSSS DEVTKKYGLE GLWKIFSSK
Sbjct: 32  STSIKP-KF--RSYQIKAIKEKAEEIQTP-PSSS-SSSSVDEVTKKYGLEVGLWKIFSSK 91

Query: 91  EEGEGKDKSKGDQAKELLAKYGGAYLATSITLSLISFAVCYALISAGVDVQALLQKVGIS 150
           EEGE K KSKGDQAKELLAKYGGAYLATSITLSLISF++CYALISAGVDVQALLQKVGIS
Sbjct: 92  EEGEQK-KSKGDQAKELLAKYGGAYLATSITLSLISFSLCYALISAGVDVQALLQKVGIS 151

Query: 151 VDGNGEKVGTFALAYAAHKATSPIRFPPTVALTSVVATWIGKKVEEE 198
            D  GEKVGTFALAYAAHKA SPIRFPPTVALT +VA WIGKKVE++
Sbjct: 152 TDATGEKVGTFALAYAAHKAASPIRFPPTVALTPIVAGWIGKKVEKD 192

[Close]

BLAST of CmaCh20G001540 vs. TAIR10
Match: AT2G27290.1 (AT2G27290.1 Protein of unknown function (DUF1279))

HSP 1 Score: 202.6 bits (514), Expect = 2.3e-52
Identity = 116/176 (65.91%), Postives = 137/176 (77.84%), Query Frame = 1


Query: 30  FSSSVRPPKFNPKRLRVQALKEKTGEIER--PSPSQSPSSSSADEVTKKYGLEAGLWKIF 89
           F SSV     + K+ R +A++EK  +I++    PS SP   SA+EVTKKYGLE GLWKI 
Sbjct: 25  FHSSVSA---SSKKFRCRAVREKAEDIDKNISPPSSSPPPPSAEEVTKKYGLEVGLWKIL 84

Query: 90  SSKEEGEGKD------KSKGDQAKELLAKYGGAYLATSITLSLISFAVCYALISAGVDVQ 149
           SSK++ EG D      KSK D+AKELLAKYGGAYLATSITLSLISF++CY L+++GVDVQ
Sbjct: 85  SSKDD-EGSDGDNKKKKSKTDEAKELLAKYGGAYLATSITLSLISFSLCYVLVTSGVDVQ 144

Query: 150 ALLQKVGISVDGNGEKVGTFALAYAAHKATSPIRFPPTVALTSVVATWIGKKVEEE 198
           ALL KVGIS +  GEKVG FALAYAAHKA SPIRFPPTVALT +VA WIGKKV++E
Sbjct: 145 ALLLKVGISTNETGEKVGAFALAYAAHKAASPIRFPPTVALTPIVANWIGKKVDKE 196

[Close]

BLAST of CmaCh20G001540 vs. NCBI nr
Match: gi|449444807|ref|XP_004140165.1| (PREDICTED: uncharacterized protein LOC101219558 [Cucumis sativus])

HSP 1 Score: 279.3 bits (713), Expect = 5.4e-72
Identity = 159/198 (80.30%), Postives = 168/198 (84.85%), Query Frame = 1


Query: 1   MATAPSPICFSSSFISSPASFPDTNFRFPFSSSVRPPKFNPKRLRVQALKEKTGEIERPS 60
           MA A S I FSSS   S  SF   NFRF F+    P KFN K  RVQALK+KTGEIERPS
Sbjct: 1   MAIASSLIAFSSS---SNISFTHPNFRFHFNFPNPPLKFNSKPFRVQALKQKTGEIERPS 60

Query: 61  PSQSPSSSSADEVTKKYGLEAGLWKIFSSKEEGEGKDKSKGDQAKELLAKYGGAYLATSI 120
           PS   SSSSADEVTKKYGLEAGLWKIFSSKEEGEG +KSKGDQAKELLAKYGGAYLATSI
Sbjct: 61  PS---SSSSADEVTKKYGLEAGLWKIFSSKEEGEGTNKSKGDQAKELLAKYGGAYLATSI 120

Query: 121 TLSLISFAVCYALISAGVDVQALLQKVGISVDGNGEKVGTFALAYAAHKATSPIRFPPTV 180
           TLSLISF++CYALISAGVDVQ LLQKVGIS+D  GEKVGTFALAYAAHKA SPIRFPPTV
Sbjct: 121 TLSLISFSLCYALISAGVDVQVLLQKVGISIDETGEKVGTFALAYAAHKAASPIRFPPTV 180

Query: 181 ALTSVVATWIGKKVEEEN 199
           ALT +VA+WIGKKVE+EN
Sbjct: 181 ALTPIVASWIGKKVEKEN 192

[Close]

BLAST of CmaCh20G001540 vs. NCBI nr
Match: gi|659097368|ref|XP_008449587.1| (PREDICTED: protein FAM210B [Cucumis melo])

HSP 1 Score: 275.8 bits (704), Expect = 5.9e-71
Identity = 158/198 (79.80%), Postives = 167/198 (84.34%), Query Frame = 1


Query: 1   MATAPSPICFSSSFISSPASFPDTNFRFPFSSSVRPPKFNPKRLRVQALKEKTGEIERPS 60
           MATA S I FSS    S  SF   NFRF F+    P KFN K  RVQALK+KTGEI+RPS
Sbjct: 1   MATASSLIAFSSF---SNFSFTHPNFRFHFNFPNPPLKFNSKSFRVQALKQKTGEIDRPS 60

Query: 61  PSQSPSSSSADEVTKKYGLEAGLWKIFSSKEEGEGKDKSKGDQAKELLAKYGGAYLATSI 120
           PS   SSSSADEVTKKYGLEAGLWKIFSSKEEGEG +KSKGDQAKELLAKYGGAYLATSI
Sbjct: 61  PS---SSSSADEVTKKYGLEAGLWKIFSSKEEGEGTNKSKGDQAKELLAKYGGAYLATSI 120

Query: 121 TLSLISFAVCYALISAGVDVQALLQKVGISVDGNGEKVGTFALAYAAHKATSPIRFPPTV 180
           TLSLISF++CYALISAGVDVQALLQKVGIS D  G KVGTFALAYAAHKA SPIRFPPTV
Sbjct: 121 TLSLISFSLCYALISAGVDVQALLQKVGISTDETGGKVGTFALAYAAHKAASPIRFPPTV 180

Query: 181 ALTSVVATWIGKKVEEEN 199
           ALT +VA+WIGKKVE+EN
Sbjct: 181 ALTPIVASWIGKKVEKEN 192

[Close]

BLAST of CmaCh20G001540 vs. NCBI nr
Match: gi|703120137|ref|XP_010102032.1| (hypothetical protein L484_016324 [Morus notabilis])

HSP 1 Score: 236.1 bits (601), Expect = 5.2e-59
Identity = 129/163 (79.14%), Postives = 142/163 (87.12%), Query Frame = 1


Query: 42  KRLRVQALKEKTGEIERPSPSQSPSSSS---ADEVTKKYGLEAGLWKIFSSKEEGEG--- 101
           KR R++ALKEKT EI+ P+ S S SSSS   ADE+TKKYGLEAGLWKIFSSKEEG+    
Sbjct: 44  KRFRIKALKEKTEEIKNPTSSSSSSSSSSAAADEITKKYGLEAGLWKIFSSKEEGKEDGE 103

Query: 102 KDKSKGDQAKELLAKYGGAYLATSITLSLISFAVCYALISAGVDVQALLQKVGISVDGNG 161
           K KSKGDQAKELLAKYGGAYLATSITLS+ISF++CY LI AGVDVQALLQKVGIS D  G
Sbjct: 104 KKKSKGDQAKELLAKYGGAYLATSITLSIISFSLCYVLIGAGVDVQALLQKVGISADETG 163

Query: 162 EKVGTFALAYAAHKATSPIRFPPTVALTSVVATWIGKKVEEEN 199
           EKVGTFALAYAAHKA SPIRFPPTVALT +VA+WIGKKVE+E+
Sbjct: 164 EKVGTFALAYAAHKAASPIRFPPTVALTPIVASWIGKKVEKED 206

[Close]

BLAST of CmaCh20G001540 vs. NCBI nr
Match: gi|743791987|ref|XP_011043200.1| (PREDICTED: uncharacterized protein LOC105138723 [Populus euphratica])

HSP 1 Score: 234.6 bits (597), Expect = 1.5e-58
Identity = 139/202 (68.81%), Postives = 159/202 (78.71%), Query Frame = 1


Query: 1   MATAPSPICFSSSFISSPASFPDTNFR-FPFSSSVRPPKFNPKRLRVQALKEKTGEIERP 60
           MATA S +       SS +   + +F+ +  S+ ++P   + KRL+ +A+KEKT E E P
Sbjct: 3   MATATSTLQVQLPPFSSASFLNNKSFKNYCCSTYIQPSNSSFKRLQTRAIKEKTEEREAP 62

Query: 61  SPSQSPSSSSADEVTKKYGLEAGLWKIFSSKE----EGEGKDKSKGDQAKELLAKYGGAY 120
           S S S SSSS +EVTKKYGLEAGLWKIFSSKE    EGE K KSKGDQAKELLAKYGGAY
Sbjct: 63  SSSSSSSSSSVEEVTKKYGLEAGLWKIFSSKEGEKEEGE-KTKSKGDQAKELLAKYGGAY 122

Query: 121 LATSITLSLISFAVCYALISAGVDVQALLQKVGISVDGNGEKVGTFALAYAAHKATSPIR 180
           LATSITLSLISF++CYALISAG+DVQALL KVGIS D NGEKVGTFALAYAAHKA SPIR
Sbjct: 123 LATSITLSLISFSLCYALISAGIDVQALLLKVGISTDANGEKVGTFALAYAAHKAASPIR 182

Query: 181 FPPTVALTSVVATWIGKKVEEE 198
           FPPTVALT +VA WIGKK ++E
Sbjct: 183 FPPTVALTPIVAGWIGKKADKE 203

[Close]

BLAST of CmaCh20G001540 vs. NCBI nr
Match: gi|731394470|ref|XP_010651851.1| (PREDICTED: uncharacterized protein LOC100258627 [Vitis vinifera])

HSP 1 Score: 233.8 bits (595), Expect = 2.6e-58
Identity = 138/201 (68.66%), Postives = 158/201 (78.61%), Query Frame = 1


Query: 1   MATAPSPICFSSSFISSPASFPDTNFRFPFSSSVRPPKFNPKRLRVQALKEKTGEIERPS 60
           MA A    CFSS+ +S         FR   S+S  P K N    RV+A+KEKT EI  PS
Sbjct: 1   MAGALLGTCFSSASLS----INTREFRIGSSASTPPSKPNFTCFRVRAIKEKTEEIRTPS 60

Query: 61  PSQSPSSSSADEVTKKYGLEAGLWKIFSSKEE---GEGKDKSKGDQAKELLAKYGGAYLA 120
           PS S SS SA E+T+K+GLEAGLWKIFSSK+E   G  ++KSKG++AKELLAKYGGAYLA
Sbjct: 61  PSPS-SSPSAQEITEKFGLEAGLWKIFSSKDEEKEGGKREKSKGEEAKELLAKYGGAYLA 120

Query: 121 TSITLSLISFAVCYALISAGVDVQALLQKVGISVDGNGEKVGTFALAYAAHKATSPIRFP 180
           TSITLSLISF++CYALI+AGVDVQALLQKVGISVD  GEKVGTFALAYAAHKA SPIRFP
Sbjct: 121 TSITLSLISFSLCYALINAGVDVQALLQKVGISVDATGEKVGTFALAYAAHKAASPIRFP 180

Query: 181 PTVALTSVVATWIGKKVEEEN 199
           PTVALT +VA+WIGK V++EN
Sbjct: 181 PTVALTPIVASWIGKIVDKEN 196

The following BLAST results are available for this feature:

BLAST of CmaCh20G001540 vs. Swiss-Prot


Match Name	E-value	Identity	Description
F210B_HUMAN	6.1e-07	33.01	Protein FAM210B OS=Homo sapiens GN=FAM210B PE=1 SV=2	[more]

BLAST of CmaCh20G001540 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KEW3_CUCSA	3.7e-72	80.30	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G425800 PE=4 SV=1	[more]
W9S681_9ROSA	3.6e-59	79.14	Uncharacterized protein OS=Morus notabilis GN=L484_016324 PE=4 SV=1	[more]
D7TCP7_VITVI	1.8e-58	68.66	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0080g01100 PE=4 SV=...	[more]
A0A061GVY6_THECC	3.1e-58	77.98	Transmembrane protein C20orf108 OS=Theobroma cacao GN=TCM_041293 PE=4 SV=1	[more]
A0A0B0P207_GOSAR	9.0e-58	79.04	Uncharacterized protein OS=Gossypium arboreum GN=F383_06574 PE=4 SV=1	[more]

BLAST of CmaCh20G001540 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G27290.1	2.3e-52	65.91	Protein of unknown function (DUF1279)	[more]

BLAST of CmaCh20G001540 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449444807\|ref\|XP_004140165.1\|	5.4e-72	80.30	PREDICTED: uncharacterized protein LOC101219558 [Cucumis sativus]	[more]
gi\|659097368\|ref\|XP_008449587.1\|	5.9e-71	79.80	PREDICTED: protein FAM210B [Cucumis melo]	[more]
gi\|703120137\|ref\|XP_010102032.1\|	5.2e-59	79.14	hypothetical protein L484_016324 [Morus notabilis]	[more]
gi\|743791987\|ref\|XP_011043200.1\|	1.5e-58	68.81	PREDICTED: uncharacterized protein LOC105138723 [Populus euphratica]	[more]
gi\|731394470\|ref\|XP_010651851.1\|	2.6e-58	68.66	PREDICTED: uncharacterized protein LOC100258627 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR009688	DUF1279

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030154	cell differentiation
biological_process	GO:0009965	leaf morphogenesis
biological_process	GO:0006661	phosphatidylinositol biosynthetic process
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
biological_process	GO:0008150	biological_process
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh20G001540.1	CmaCh20G001540.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009688	Domain of unknown function DUF1279	PFAM	PF06916	DUF1279	coord: 103..184 score: 6.8
None	No IPR available	PANTHER	PTHR21377	UNCHARACTERIZED	coord: 25..193 score: 2.3
None	No IPR available	PANTHER	PTHR21377:SF3	SUBFAMILY NOT NAMED	coord: 25..193 score: 2.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh20G001540	Cucsa.185840	Cucumber (Gy14) v1	cgycmaB0530
CmaCh20G001540	Cla008625	Watermelon (97103) v1	cmawmB531
CmaCh20G001540	Csa6G425800	Cucumber (Chinese Long) v2	cmacuB562
CmaCh20G001540	MELO3C014513	Melon (DHL92) v3.5.1	cmameB521
CmaCh20G001540	ClCG02G022370	Watermelon (Charleston Gray)	cmawcgB489
CmaCh20G001540	CSPI06G23360	Wild cucumber (PI 183967)	cmacpiB569
CmaCh20G001540	CmoCh20G001700	Cucurbita moschata (Rifu)	cmacmoB550
CmaCh20G001540	Lsi10G011430	Bottle gourd (USVL1VR-Ls)	cmalsiB500
CmaCh20G001540	Cp4.1LG16g08040	Cucurbita pepo (Zucchini)	cmacpeB564
CmaCh20G001540	MELO3C014513.2	Melon (DHL92) v3.6.1	cmamedB598
CmaCh20G001540	CsaV3_6G038500	Cucumber (Chinese Long) v3	cmacucB0676
CmaCh20G001540	Cla97C02G048460	Watermelon (97103) v2	cmawmbB577
CmaCh20G001540	Bhi10G000137	Wax gourd	cmawgoB0693
CmaCh20G001540	CsGy6G022610	Cucumber (Gy14) v2	cgybcmaB799
CmaCh20G001540	Carg18416	Silver-seed gourd	carcmaB0575

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh20G001540	Silver-seed gourd	carcmaB0345
CmaCh20G001540	Silver-seed gourd	carcmaB1267
CmaCh20G001540	Cucumber (Chinese Long) v3	cmacucB0658
CmaCh20G001540	Cucurbita maxima (Rimu)	cmacmaB262
CmaCh20G001540	Cucurbita maxima (Rimu)	cmacmaB470
CmaCh20G001540	Cucurbita maxima (Rimu)	cmacmaB491
CmaCh20G001540	Cucumber (Gy14) v1	cgycmaB0678
CmaCh20G001540	Cucurbita moschata (Rifu)	cmacmoB555
CmaCh20G001540	Cucurbita moschata (Rifu)	cmacmoB570
CmaCh20G001540	Wild cucumber (PI 183967)	cmacpiB553
CmaCh20G001540	Cucumber (Chinese Long) v2	cmacuB548
CmaCh20G001540	Melon (DHL92) v3.5.1	cmameB519
CmaCh20G001540	Watermelon (Charleston Gray)	cmawcgB475
CmaCh20G001540	Watermelon (97103) v1	cmawmB511
CmaCh20G001540	Cucurbita pepo (Zucchini)	cmacpeB572
CmaCh20G001540	Cucurbita pepo (Zucchini)	cmacpeB580
CmaCh20G001540	Cucurbita pepo (Zucchini)	cmacpeB586
CmaCh20G001540	Cucurbita pepo (Zucchini)	cmacpeB592
CmaCh20G001540	Cucumber (Gy14) v2	cgybcmaB119