Lsi10G009090 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi10G009090
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Unknown protein
Location	chr10 : 13562690 .. 13563242 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTGCAACTTCTAAGTTCCTCTTTTTGGCTAAGGATGGAGAGGAACACAAGCTCTTCAATAACAAAGTTAAATCTATTGGAGGGATTTTGGATCAGGTTTTTTGGTTGGTCATTCTGTAAGTTCTATGCTCCATGTGGATCGTAATCTTTCCTATATTTCTGCCACTTGGAAGAGTTTTTCATAGTTTCCTTGGCTTGGAGTTTGATTTTCCTTCCCCCTTTCTGAAATCTCGTGTGTTCTATGAAATGAAATCCTTTCTCCTTGAAGGAAAAAAGGGTGTTTCTCTTACACCTAGCTTGGGAGGTTGTGCTACCCCCTGCGTGCTCACCCACATATTTTGTTTTCAGCTTTATTCATTTCTTTTATTTTTGATACAGTAACCAACCAATTATAGCATCAATTTTTACTATTTTCTGTCTGCAGACCTCCCATTTTGGTAATGGTGATAATGGTTCTACCTCTGGGCTAGATGTATCTCGATCAAAGCTGTCCAGACATTTCCAAGTAGCAGATGTGAGTATCCTTATCTCAGATTATGAAACCTGTTAG

mRNA sequence

ATGGTTGCAACTTCTAAGTTCCTCTTTTTGGCTAAGGATGGAGAGGAACACAAGCTCTTCAATAACAAAGTTAAATCTATTGGAGGGATTTTGGATCAGACCTCCCATTTTGGTAATGGTGATAATGGTTCTACCTCTGGGCTAGATGTATCTCGATCAAAGCTGTCCAGACATTTCCAAGTAGCAGATGTGAGTATCCTTATCTCAGATTATGAAACCTGTTAG

Coding sequence (CDS)

ATGGTTGCAACTTCTAAGTTCCTCTTTTTGGCTAAGGATGGAGAGGAACACAAGCTCTTCAATAACAAAGTTAAATCTATTGGAGGGATTTTGGATCAGACCTCCCATTTTGGTAATGGTGATAATGGTTCTACCTCTGGGCTAGATGTATCTCGATCAAAGCTGTCCAGACATTTCCAAGTAGCAGATGTGAGTATCCTTATCTCAGATTATGAAACCTGTTAG

Protein sequence

MVATSKFLFLAKDGEEHKLFNNKVKSIGGILDQTSHFGNGDNGSTSGLDVSRSKLSRHFQVADVSILISDYETC

Homology

[Close]

BLAST of Lsi10G009090 vs. TrEMBL
Match: A0A0A0KWY7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G266940 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 2.3e-06
Identity = 29/33 (87.88%), Postives = 29/33 (87.88%), Query Frame = 1


Query: 31  LDQTSHFGNGDNGSTSGLDVSRSKLSRHFQVAD 64
           L   SHFGNGDNGSTSG DVSRSKLSRHFQVAD
Sbjct: 201 LSGISHFGNGDNGSTSGPDVSRSKLSRHFQVAD 233

[Close]

BLAST of Lsi10G009090 vs. NCBI nr
Match: gi|778692699|ref|XP_011653507.1| (PREDICTED: uncharacterized protein LOC101215314 isoform X2 [Cucumis sativus])

HSP 1 Score: 59.3 bits (142), Expect = 3.3e-06
Identity = 29/33 (87.88%), Postives = 29/33 (87.88%), Query Frame = 1


Query: 31  LDQTSHFGNGDNGSTSGLDVSRSKLSRHFQVAD 64
           L   SHFGNGDNGSTSG DVSRSKLSRHFQVAD
Sbjct: 201 LSGISHFGNGDNGSTSGPDVSRSKLSRHFQVAD 233

[Close]

BLAST of Lsi10G009090 vs. NCBI nr
Match: gi|659097983|ref|XP_008449914.1| (PREDICTED: uncharacterized protein LOC103491645 isoform X1 [Cucumis melo])

HSP 1 Score: 59.3 bits (142), Expect = 3.3e-06
Identity = 29/33 (87.88%), Postives = 29/33 (87.88%), Query Frame = 1


Query: 31  LDQTSHFGNGDNGSTSGLDVSRSKLSRHFQVAD 64
           L   SHFGNGDNGSTSG DVSRSKLSRHFQVAD
Sbjct: 201 LSGISHFGNGDNGSTSGPDVSRSKLSRHFQVAD 233

[Close]

BLAST of Lsi10G009090 vs. NCBI nr
Match: gi|449463828|ref|XP_004149633.1| (PREDICTED: uncharacterized protein LOC101215314 isoform X1 [Cucumis sativus])

HSP 1 Score: 59.3 bits (142), Expect = 3.3e-06
Identity = 29/33 (87.88%), Postives = 29/33 (87.88%), Query Frame = 1


Query: 31  LDQTSHFGNGDNGSTSGLDVSRSKLSRHFQVAD 64
           L   SHFGNGDNGSTSG DVSRSKLSRHFQVAD
Sbjct: 201 LSGISHFGNGDNGSTSGPDVSRSKLSRHFQVAD 233

[Close]

BLAST of Lsi10G009090 vs. NCBI nr
Match: gi|778692702|ref|XP_011653508.1| (PREDICTED: uncharacterized protein LOC101215314 isoform X3 [Cucumis sativus])

HSP 1 Score: 59.3 bits (142), Expect = 3.3e-06
Identity = 29/33 (87.88%), Postives = 29/33 (87.88%), Query Frame = 1


Query: 31  LDQTSHFGNGDNGSTSGLDVSRSKLSRHFQVAD 64
           L   SHFGNGDNGSTSG DVSRSKLSRHFQVAD
Sbjct: 192 LSGISHFGNGDNGSTSGPDVSRSKLSRHFQVAD 224

[Close]

BLAST of Lsi10G009090 vs. NCBI nr
Match: gi|659097985|ref|XP_008449915.1| (PREDICTED: uncharacterized protein LOC103491645 isoform X2 [Cucumis melo])

HSP 1 Score: 59.3 bits (142), Expect = 3.3e-06
Identity = 29/33 (87.88%), Postives = 29/33 (87.88%), Query Frame = 1


Query: 31  LDQTSHFGNGDNGSTSGLDVSRSKLSRHFQVAD 64
           L   SHFGNGDNGSTSG DVSRSKLSRHFQVAD
Sbjct: 192 LSGISHFGNGDNGSTSGPDVSRSKLSRHFQVAD 224

The following BLAST results are available for this feature:

BLAST of Lsi10G009090 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi10G009090 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KWY7_CUCSA	2.3e-06	87.88	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G266940 PE=4 SV=1	[more]

BLAST of Lsi10G009090 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Lsi10G009090 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778692699\|ref\|XP_011653507.1\|	3.3e-06	87.88	PREDICTED: uncharacterized protein LOC101215314 isoform X2 [Cucumis sativus]	[more]
gi\|659097983\|ref\|XP_008449914.1\|	3.3e-06	87.88	PREDICTED: uncharacterized protein LOC103491645 isoform X1 [Cucumis melo]	[more]
gi\|449463828\|ref\|XP_004149633.1\|	3.3e-06	87.88	PREDICTED: uncharacterized protein LOC101215314 isoform X1 [Cucumis sativus]	[more]
gi\|778692702\|ref\|XP_011653508.1\|	3.3e-06	87.88	PREDICTED: uncharacterized protein LOC101215314 isoform X3 [Cucumis sativus]	[more]
gi\|659097985\|ref\|XP_008449915.1\|	3.3e-06	87.88	PREDICTED: uncharacterized protein LOC103491645 isoform X2 [Cucumis melo]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi10G009090.1	Lsi10G009090.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi10G009090	ClCG02G024480	Watermelon (Charleston Gray)	lsiwcgB054
Lsi10G009090	Carg13982	Silver-seed gourd	carlsiB458

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi10G009090	Cucumber (Chinese Long) v3	cuclsiB271
Lsi10G009090	Watermelon (97103) v2	lsiwmbB052
Lsi10G009090	Wax gourd	lsiwgoB079
Lsi10G009090	Cucurbita maxima (Rimu)	cmalsiB086
Lsi10G009090	Cucurbita maxima (Rimu)	cmalsiB500
Lsi10G009090	Cucurbita maxima (Rimu)	cmalsiB540
Lsi10G009090	Cucurbita moschata (Rifu)	cmolsiB484
Lsi10G009090	Cucurbita moschata (Rifu)	cmolsiB525
Lsi10G009090	Cucumber (Chinese Long) v2	culsiB246
Lsi10G009090	Watermelon (97103) v1	lsiwmB078
Lsi10G009090	Cucumber (Gy14) v2	cgyblsiB235