Lsi10G009090.1 (mRNA) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi10G009090.1
Type	mRNA
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Unknown protein
Location	chr10 : 13562690 .. 13563242 (-)
Sequence length	225

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTGCAACTTCTAAGTTCCTCTTTTTGGCTAAGGATGGAGAGGAACACAAGCTCTTCAATAACAAAGTTAAATCTATTGGAGGGATTTTGGATCAGGTTTTTTGGTTGGTCATTCTGTAAGTTCTATGCTCCATGTGGATCGTAATCTTTCCTATATTTCTGCCACTTGGAAGAGTTTTTCATAGTTTCCTTGGCTTGGAGTTTGATTTTCCTTCCCCCTTTCTGAAATCTCGTGTGTTCTATGAAATGAAATCCTTTCTCCTTGAAGGAAAAAAGGGTGTTTCTCTTACACCTAGCTTGGGAGGTTGTGCTACCCCCTGCGTGCTCACCCACATATTTTGTTTTCAGCTTTATTCATTTCTTTTATTTTTGATACAGTAACCAACCAATTATAGCATCAATTTTTACTATTTTCTGTCTGCAGACCTCCCATTTTGGTAATGGTGATAATGGTTCTACCTCTGGGCTAGATGTATCTCGATCAAAGCTGTCCAGACATTTCCAAGTAGCAGATGTGAGTATCCTTATCTCAGATTATGAAACCTGTTAG

mRNA sequence

ATGGTTGCAACTTCTAAGTTCCTCTTTTTGGCTAAGGATGGAGAGGAACACAAGCTCTTCAATAACAAAGTTAAATCTATTGGAGGGATTTTGGATCAGACCTCCCATTTTGGTAATGGTGATAATGGTTCTACCTCTGGGCTAGATGTATCTCGATCAAAGCTGTCCAGACATTTCCAAGTAGCAGATGTGAGTATCCTTATCTCAGATTATGAAACCTGTTAG

Coding sequence (CDS)

ATGGTTGCAACTTCTAAGTTCCTCTTTTTGGCTAAGGATGGAGAGGAACACAAGCTCTTCAATAACAAAGTTAAATCTATTGGAGGGATTTTGGATCAGACCTCCCATTTTGGTAATGGTGATAATGGTTCTACCTCTGGGCTAGATGTATCTCGATCAAAGCTGTCCAGACATTTCCAAGTAGCAGATGTGAGTATCCTTATCTCAGATTATGAAACCTGTTAG

Protein sequence

MVATSKFLFLAKDGEEHKLFNNKVKSIGGILDQTSHFGNGDNGSTSGLDVSRSKLSRHFQVADVSILISDYETC

Homology

[Close]

BLAST of Lsi10G009090.1 vs. TrEMBL
Match: A0A0A0KWY7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G266940 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 2.3e-06
Identity = 29/33 (87.88%), Postives = 29/33 (87.88%), Query Frame = 1


Query: 31  LDQTSHFGNGDNGSTSGLDVSRSKLSRHFQVAD 64
           L   SHFGNGDNGSTSG DVSRSKLSRHFQVAD
Sbjct: 201 LSGISHFGNGDNGSTSGPDVSRSKLSRHFQVAD 233

[Close]

BLAST of Lsi10G009090.1 vs. NCBI nr
Match: gi|778692699|ref|XP_011653507.1| (PREDICTED: uncharacterized protein LOC101215314 isoform X2 [Cucumis sativus])

HSP 1 Score: 59.3 bits (142), Expect = 3.3e-06
Identity = 29/33 (87.88%), Postives = 29/33 (87.88%), Query Frame = 1


Query: 31  LDQTSHFGNGDNGSTSGLDVSRSKLSRHFQVAD 64
           L   SHFGNGDNGSTSG DVSRSKLSRHFQVAD
Sbjct: 201 LSGISHFGNGDNGSTSGPDVSRSKLSRHFQVAD 233

[Close]

BLAST of Lsi10G009090.1 vs. NCBI nr
Match: gi|659097983|ref|XP_008449914.1| (PREDICTED: uncharacterized protein LOC103491645 isoform X1 [Cucumis melo])

HSP 1 Score: 59.3 bits (142), Expect = 3.3e-06
Identity = 29/33 (87.88%), Postives = 29/33 (87.88%), Query Frame = 1


Query: 31  LDQTSHFGNGDNGSTSGLDVSRSKLSRHFQVAD 64
           L   SHFGNGDNGSTSG DVSRSKLSRHFQVAD
Sbjct: 201 LSGISHFGNGDNGSTSGPDVSRSKLSRHFQVAD 233

[Close]

BLAST of Lsi10G009090.1 vs. NCBI nr
Match: gi|449463828|ref|XP_004149633.1| (PREDICTED: uncharacterized protein LOC101215314 isoform X1 [Cucumis sativus])

HSP 1 Score: 59.3 bits (142), Expect = 3.3e-06
Identity = 29/33 (87.88%), Postives = 29/33 (87.88%), Query Frame = 1


Query: 31  LDQTSHFGNGDNGSTSGLDVSRSKLSRHFQVAD 64
           L   SHFGNGDNGSTSG DVSRSKLSRHFQVAD
Sbjct: 201 LSGISHFGNGDNGSTSGPDVSRSKLSRHFQVAD 233

[Close]

BLAST of Lsi10G009090.1 vs. NCBI nr
Match: gi|778692702|ref|XP_011653508.1| (PREDICTED: uncharacterized protein LOC101215314 isoform X3 [Cucumis sativus])

HSP 1 Score: 59.3 bits (142), Expect = 3.3e-06
Identity = 29/33 (87.88%), Postives = 29/33 (87.88%), Query Frame = 1


Query: 31  LDQTSHFGNGDNGSTSGLDVSRSKLSRHFQVAD 64
           L   SHFGNGDNGSTSG DVSRSKLSRHFQVAD
Sbjct: 192 LSGISHFGNGDNGSTSGPDVSRSKLSRHFQVAD 224

[Close]

BLAST of Lsi10G009090.1 vs. NCBI nr
Match: gi|659097985|ref|XP_008449915.1| (PREDICTED: uncharacterized protein LOC103491645 isoform X2 [Cucumis melo])

HSP 1 Score: 59.3 bits (142), Expect = 3.3e-06
Identity = 29/33 (87.88%), Postives = 29/33 (87.88%), Query Frame = 1


Query: 31  LDQTSHFGNGDNGSTSGLDVSRSKLSRHFQVAD 64
           L   SHFGNGDNGSTSG DVSRSKLSRHFQVAD
Sbjct: 192 LSGISHFGNGDNGSTSGPDVSRSKLSRHFQVAD 224

The following BLAST results are available for this feature:

BLAST of Lsi10G009090.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi10G009090.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KWY7_CUCSA	2.3e-06	87.88	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G266940 PE=4 SV=1	[more]

BLAST of Lsi10G009090.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Lsi10G009090.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778692699\|ref\|XP_011653507.1\|	3.3e-06	87.88	PREDICTED: uncharacterized protein LOC101215314 isoform X2 [Cucumis sativus]	[more]
gi\|659097983\|ref\|XP_008449914.1\|	3.3e-06	87.88	PREDICTED: uncharacterized protein LOC103491645 isoform X1 [Cucumis melo]	[more]
gi\|449463828\|ref\|XP_004149633.1\|	3.3e-06	87.88	PREDICTED: uncharacterized protein LOC101215314 isoform X1 [Cucumis sativus]	[more]
gi\|778692702\|ref\|XP_011653508.1\|	3.3e-06	87.88	PREDICTED: uncharacterized protein LOC101215314 isoform X3 [Cucumis sativus]	[more]
gi\|659097985\|ref\|XP_008449915.1\|	3.3e-06	87.88	PREDICTED: uncharacterized protein LOC103491645 isoform X2 [Cucumis melo]	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lsi10G009090	Lsi10G009090	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi10G009090.1.CDS.2	Lsi10G009090.1.CDS.2	CDS
Lsi10G009090.1.CDS.1	Lsi10G009090.1.CDS.1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lsi10G009090.1	Lsi10G009090.1-protein	polypeptide